Wall clock time and date at job start Tue Mar 31 2020 15:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76200 * 102.99877 * 2 1 4 4 N 1.33202 * 125.28796 * 359.97438 * 3 2 1 5 5 C 1.32886 * 109.69725 * 180.02562 * 4 3 2 6 6 N 1.33801 * 132.35096 * 179.71653 * 5 4 3 7 7 C 1.31658 * 121.01594 * 179.82161 * 6 5 4 8 8 C 1.50699 * 119.81037 * 180.25104 * 7 6 5 9 9 C 1.39347 * 120.37825 * 0.49141 * 7 6 5 10 10 C 1.36898 * 119.17038 * 359.76235 * 9 7 6 11 11 O 1.35253 * 120.54678 * 180.02562 * 10 9 7 12 12 C 1.42891 * 116.99940 * 174.94637 * 11 10 9 13 13 H 1.08997 * 109.47653 * 29.97325 * 12 11 10 14 14 C 1.50702 * 109.47334 * 149.97822 * 12 11 10 15 15 H 1.08002 * 119.99484 * 0.02562 * 14 12 11 16 16 C 1.37875 * 120.00257 * 179.97438 * 14 12 11 17 17 N 1.31515 * 119.99932 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00003 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47018 * 90.00605 * 18 16 14 20 20 H 1.48503 * 109.47155 * 210.00358 * 18 16 14 21 21 H 1.48501 * 109.47287 * 330.00404 * 18 16 14 22 22 C 1.53010 * 109.47014 * 269.97757 * 12 11 10 23 23 Cl 1.80287 * 109.46997 * 65.00012 * 22 12 11 24 24 N 1.36196 * 118.90532 * 359.97438 * 10 9 7 25 25 N 1.31709 * 125.28845 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.46874 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47121 * 299.99598 * 1 2 3 28 28 H 1.08998 * 109.47511 * 60.00116 * 1 2 3 29 29 H 1.09001 * 109.47108 * 270.24515 * 8 7 6 30 30 H 1.08997 * 109.46975 * 30.24359 * 8 7 6 31 31 H 1.08994 * 109.47030 * 150.24526 * 8 7 6 32 32 H 1.07998 * 120.41455 * 179.73111 * 9 7 6 33 33 H 0.97002 * 119.99766 * 179.97438 * 17 16 14 34 34 H 1.08998 * 109.47056 * 185.00279 * 22 12 11 35 35 H 1.08998 * 109.46960 * 304.99947 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 7 1.3239 2.7112 -0.0005 5 6 1.9598 3.8780 -0.0009 6 7 1.5229 5.1427 -0.0063 7 6 2.3678 6.1524 -0.0018 8 6 1.8459 7.5661 -0.0024 9 6 3.7420 5.9213 -0.0016 10 6 4.2018 4.6318 -0.0011 11 8 5.5299 4.3756 -0.0003 12 6 5.9265 3.0074 0.1123 13 1 5.1640 2.3700 -0.3353 14 6 7.2361 2.8033 -0.6048 15 1 7.7176 3.6355 -1.0970 16 6 7.8201 1.5547 -0.6317 17 7 7.2340 0.5416 -0.0320 18 14 9.4431 1.3016 -1.5213 19 1 10.5662 1.5331 -0.5776 20 1 9.5115 -0.0879 -2.0407 21 1 9.5420 2.2584 -2.6526 22 6 6.0919 2.6443 1.5894 23 17 4.4930 2.7470 2.4162 24 7 3.2999 3.6113 -0.0003 25 7 3.4289 2.2164 -0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 1.7200 7.9065 -1.0303 30 1 0.8851 7.5988 0.5113 31 1 2.5549 8.2153 0.5111 32 1 4.4356 6.7491 -0.0023 33 1 7.6447 -0.3370 -0.0512 34 1 6.4795 1.6290 1.6728 35 1 6.7887 3.3389 2.0585 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225536609.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:59 Heat of formation + Delta-G solvation = 98.358605 kcal Electronic energy + Delta-G solvation = -24065.428982 eV Core-core repulsion = 20447.380422 eV Total energy + Delta-G solvation = -3618.048560 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.050 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.47596 -39.09015 -38.07384 -35.03398 -33.85954 -33.14518 -31.92669 -30.71359 -29.20357 -28.68976 -28.22642 -25.46801 -24.09015 -22.98518 -22.01628 -21.36976 -18.24593 -17.83944 -17.12912 -16.82193 -16.44522 -15.94658 -15.07944 -14.69370 -14.47769 -14.17518 -13.91544 -13.77932 -13.39404 -13.29078 -13.00670 -12.62552 -12.45187 -12.35427 -12.28442 -12.06296 -11.74719 -11.33444 -11.22127 -11.02791 -10.81979 -10.44660 -10.40335 -10.14575 -9.79811 -9.66411 -9.55836 -9.25490 -9.02146 -8.63424 -7.91598 -7.51189 -6.48629 -4.59400 0.94487 1.15380 1.28029 2.37338 2.39293 2.84359 3.07364 3.13606 3.18053 3.26991 3.40392 3.73427 3.76340 4.13202 4.58068 4.85682 4.92928 5.21056 5.23343 5.29964 5.42514 5.48222 5.70360 5.77967 5.84707 5.88966 6.05409 6.13909 6.22071 6.42070 6.50051 6.82003 7.17770 7.37215 7.62929 7.67677 7.94272 8.22004 8.49835 9.06524 10.57365 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010812 B = 0.006089 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.034500 B = 4597.127741 C = 6198.714812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S 0.030 5.970 3 C 0.233 3.767 4 N -0.540 5.540 5 C 0.482 3.518 6 N -0.505 5.505 7 C 0.256 3.744 8 C -0.101 4.101 9 C -0.301 4.301 10 C 0.442 3.558 11 O -0.285 6.285 12 C 0.173 3.827 13 H 0.115 0.885 14 C -0.533 4.533 15 H 0.076 0.924 16 C 0.068 3.932 17 N -0.875 5.875 18 Si 0.918 3.082 19 H -0.275 1.275 20 H -0.280 1.280 21 H -0.270 1.270 22 C -0.030 4.030 23 Cl -0.239 7.239 24 N -0.352 5.352 25 N -0.259 5.259 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.170 0.830 33 H 0.274 0.726 34 H 0.139 0.861 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.525 5.941 0.596 10.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.256 5.744 3 C -0.155 4.155 4 N -0.277 5.277 5 C 0.119 3.881 6 N -0.229 5.229 7 C 0.096 3.904 8 C -0.158 4.158 9 C -0.329 4.329 10 C 0.276 3.724 11 O -0.187 6.187 12 C 0.120 3.880 13 H 0.131 0.869 14 C -0.570 4.570 15 H 0.094 0.906 16 C -0.137 4.137 17 N -0.511 5.511 18 Si 0.744 3.256 19 H -0.201 1.201 20 H -0.205 1.205 21 H -0.194 1.194 22 C -0.092 4.092 23 Cl -0.213 7.213 24 N -0.144 5.144 25 N -0.092 5.092 26 H 0.126 0.874 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.187 0.813 33 H 0.084 0.916 34 H 0.157 0.843 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.306 4.272 0.682 9.365 hybrid contribution 0.986 0.809 -0.157 1.285 sum -7.320 5.081 0.525 8.927 Atomic orbital electron populations 1.23600 0.95030 1.06169 1.06918 1.85669 1.05286 0.91000 1.92414 1.26326 0.90022 1.00572 0.98564 1.71085 1.29133 0.94031 1.33476 1.22564 0.77919 0.93093 0.94497 1.67799 1.35784 0.94224 1.25098 1.21497 0.88189 0.95398 0.85302 1.20776 1.02742 0.88290 1.04034 1.20686 0.97052 0.92838 1.22315 1.20181 0.81123 0.85931 0.85134 1.86211 1.13906 1.36105 1.82497 1.21936 1.00338 0.73099 0.92630 0.86878 1.20887 1.04693 0.96220 1.35229 0.90553 1.24954 0.98562 0.94971 0.95176 1.69828 1.38677 1.01134 1.41411 0.86151 0.81714 0.77935 0.79770 1.20075 1.20548 1.19418 1.25653 0.81615 1.07698 0.94267 1.98645 1.40541 1.99091 1.83063 1.49491 1.08949 1.06769 1.49170 1.79147 1.16451 0.82204 1.31376 0.87409 0.89381 0.89361 0.89132 0.89620 0.89501 0.81283 0.91589 0.84295 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.36 101.05 1.05 -0.76 16 2 S 0.03 0.51 22.81 -107.50 -2.45 -1.94 16 3 C 0.23 4.91 8.24 -91.00 -0.75 4.16 16 4 N -0.54 -11.33 10.80 -14.60 -0.16 -11.49 16 5 C 0.48 10.07 8.99 -323.12 -2.90 7.17 16 6 N -0.50 -9.19 10.40 -10.15 -0.11 -9.30 16 7 C 0.26 3.72 6.81 -82.25 -0.56 3.16 16 8 C -0.10 -0.90 10.18 36.00 0.37 -0.53 16 9 C -0.30 -4.72 9.67 -39.65 -0.38 -5.10 16 10 C 0.44 8.94 6.51 -16.10 -0.10 8.84 16 11 O -0.28 -6.37 9.73 -17.45 -0.17 -6.54 16 12 C 0.17 4.27 2.18 -27.88 -0.06 4.21 16 13 H 0.11 3.03 4.44 -58.52 -0.26 2.77 16 14 C -0.53 -13.77 8.89 -34.44 -0.31 -14.08 16 15 H 0.08 1.95 7.81 -52.49 -0.41 1.54 16 16 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 17 N -0.87 -22.88 11.29 55.43 0.63 -22.25 16 18 Si 0.92 19.72 29.54 -169.99 -5.02 14.70 16 19 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 C -0.03 -0.70 6.17 37.16 0.23 -0.47 16 23 Cl -0.24 -5.32 24.49 -51.86 -1.27 -6.59 16 24 N -0.35 -7.63 2.69 -13.93 -0.04 -7.67 16 25 N -0.26 -5.98 6.87 30.12 0.21 -5.77 16 26 H 0.11 0.97 8.14 -51.92 -0.42 0.55 16 27 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.17 2.06 8.06 -52.49 -0.42 1.63 16 33 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 34 H 0.14 3.52 5.95 -51.93 -0.31 3.21 16 35 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 324.73 15.07 4.89 4.89 Total: -1.00 -30.22 324.73 -10.50 -40.72 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -3.49 Total: 3.00 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -3.52 Total: 8.24 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: 0.53 Total: -56.48 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.17 Total: -6.54 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 16 Polarization: 0.51 SS G_CDS: -2.45 Total: -1.94 kcal Atomic # 17 Polarization: -5.32 SS G_CDS: -1.27 Total: -6.59 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.22 -10.50 -40.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225536609.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.076 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds