Wall clock time and date at job start Tue Mar 31 2020 15:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76200 * 102.99877 * 2 1 4 4 N 1.33202 * 125.28796 * 359.97438 * 3 2 1 5 5 C 1.32886 * 109.69725 * 180.02562 * 4 3 2 6 6 N 1.33801 * 132.35096 * 179.71653 * 5 4 3 7 7 C 1.31658 * 121.01594 * 179.82161 * 6 5 4 8 8 C 1.50699 * 119.81037 * 180.25104 * 7 6 5 9 9 C 1.39347 * 120.37825 * 0.49141 * 7 6 5 10 10 C 1.36898 * 119.17038 * 359.76235 * 9 7 6 11 11 O 1.35253 * 120.54678 * 180.02562 * 10 9 7 12 12 C 1.42891 * 116.99940 * 174.94637 * 11 10 9 13 13 H 1.08997 * 109.47653 * 29.97325 * 12 11 10 14 14 C 1.50702 * 109.47334 * 149.97822 * 12 11 10 15 15 H 1.08002 * 119.99484 * 0.02562 * 14 12 11 16 16 C 1.37875 * 120.00257 * 179.97438 * 14 12 11 17 17 N 1.31515 * 119.99932 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00003 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47018 * 90.00605 * 18 16 14 20 20 H 1.48503 * 109.47155 * 210.00358 * 18 16 14 21 21 H 1.48501 * 109.47287 * 330.00404 * 18 16 14 22 22 C 1.53010 * 109.47014 * 269.97757 * 12 11 10 23 23 Cl 1.80287 * 109.46997 * 65.00012 * 22 12 11 24 24 N 1.36196 * 118.90532 * 359.97438 * 10 9 7 25 25 N 1.31709 * 125.28845 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.46874 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47121 * 299.99598 * 1 2 3 28 28 H 1.08998 * 109.47511 * 60.00116 * 1 2 3 29 29 H 1.09001 * 109.47108 * 270.24515 * 8 7 6 30 30 H 1.08997 * 109.46975 * 30.24359 * 8 7 6 31 31 H 1.08994 * 109.47030 * 150.24526 * 8 7 6 32 32 H 1.07998 * 120.41455 * 179.73111 * 9 7 6 33 33 H 0.97002 * 119.99766 * 179.97438 * 17 16 14 34 34 H 1.08998 * 109.47056 * 185.00279 * 22 12 11 35 35 H 1.08998 * 109.46960 * 304.99947 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 7 1.3239 2.7112 -0.0005 5 6 1.9598 3.8780 -0.0009 6 7 1.5229 5.1427 -0.0063 7 6 2.3678 6.1524 -0.0018 8 6 1.8459 7.5661 -0.0024 9 6 3.7420 5.9213 -0.0016 10 6 4.2018 4.6318 -0.0011 11 8 5.5299 4.3756 -0.0003 12 6 5.9265 3.0074 0.1123 13 1 5.1640 2.3700 -0.3353 14 6 7.2361 2.8033 -0.6048 15 1 7.7176 3.6355 -1.0970 16 6 7.8201 1.5547 -0.6317 17 7 7.2340 0.5416 -0.0320 18 14 9.4431 1.3016 -1.5213 19 1 10.5662 1.5331 -0.5776 20 1 9.5115 -0.0879 -2.0407 21 1 9.5420 2.2584 -2.6526 22 6 6.0919 2.6443 1.5894 23 17 4.4930 2.7470 2.4162 24 7 3.2999 3.6113 -0.0003 25 7 3.4289 2.2164 -0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 1.7200 7.9065 -1.0303 30 1 0.8851 7.5988 0.5113 31 1 2.5549 8.2153 0.5111 32 1 4.4356 6.7491 -0.0023 33 1 7.6447 -0.3370 -0.0512 34 1 6.4795 1.6290 1.6728 35 1 6.7887 3.3389 2.0585 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225536609.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:58 Heat of formation + Delta-G solvation = 82.508258 kcal Electronic energy + Delta-G solvation = -24066.116305 eV Core-core repulsion = 20447.380422 eV Total energy + Delta-G solvation = -3618.735883 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.050 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.96135 -40.64717 -39.50254 -36.82252 -35.64231 -34.72213 -33.21457 -32.33473 -30.84112 -29.76134 -29.37418 -27.39429 -25.53865 -24.46400 -23.49596 -23.01566 -19.81106 -19.26925 -18.74236 -18.46430 -18.03533 -17.36090 -16.88883 -16.23244 -15.90124 -15.61413 -15.38717 -14.98070 -14.92505 -14.39129 -14.25161 -14.01440 -13.94445 -13.82809 -13.59507 -13.20836 -13.07076 -12.99815 -12.87641 -12.65836 -12.49370 -12.17369 -11.88955 -11.62358 -11.40872 -11.22218 -11.12119 -10.95560 -10.69932 -10.44120 -9.43240 -8.87328 -8.39829 -6.58559 -0.43737 -0.27753 -0.08423 0.94076 1.20629 1.33007 1.35702 1.39012 1.48307 1.51045 1.80984 2.32634 2.34828 2.46887 2.92780 3.15392 3.75186 3.97775 4.15137 4.21410 4.30507 4.32994 4.33691 4.40781 4.65753 4.81695 4.87353 4.88618 4.90234 4.98305 5.14325 5.36163 5.43906 5.47153 5.75757 5.96516 6.42575 6.57806 6.74214 7.11274 8.65907 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010812 B = 0.006089 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.034500 B = 4597.127741 C = 6198.714812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S 0.009 5.991 3 C 0.224 3.776 4 N -0.553 5.553 5 C 0.464 3.536 6 N -0.516 5.516 7 C 0.263 3.737 8 C -0.097 4.097 9 C -0.274 4.274 10 C 0.397 3.603 11 O -0.297 6.297 12 C 0.178 3.822 13 H 0.094 0.906 14 C -0.556 4.556 15 H 0.072 0.928 16 C 0.028 3.972 17 N -0.899 5.899 18 Si 0.981 3.019 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.018 4.018 23 Cl -0.229 7.229 24 N -0.358 5.358 25 N -0.301 5.301 26 H 0.147 0.853 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.210 0.790 33 H 0.276 0.724 34 H 0.118 0.882 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.156 7.867 0.361 12.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.235 5.765 3 C -0.164 4.164 4 N -0.292 5.292 5 C 0.102 3.898 6 N -0.241 5.241 7 C 0.105 3.895 8 C -0.154 4.154 9 C -0.300 4.300 10 C 0.234 3.766 11 O -0.201 6.201 12 C 0.123 3.877 13 H 0.111 0.889 14 C -0.593 4.593 15 H 0.090 0.910 16 C -0.174 4.174 17 N -0.535 5.535 18 Si 0.804 3.196 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.081 4.081 23 Cl -0.203 7.203 24 N -0.150 5.150 25 N -0.135 5.135 26 H 0.165 0.835 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.134 0.866 30 H 0.111 0.889 31 H 0.139 0.861 32 H 0.227 0.773 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.960 6.238 0.454 10.927 hybrid contribution 0.990 0.362 -0.074 1.057 sum -7.970 6.600 0.380 10.355 Atomic orbital electron populations 1.23719 0.90824 1.08579 1.06862 1.85641 1.09805 0.89130 1.91911 1.26859 0.89635 1.01978 0.97881 1.71045 1.29416 0.94305 1.34385 1.23013 0.77879 0.94081 0.94805 1.67984 1.36599 0.93743 1.25764 1.22548 0.87540 0.97047 0.82358 1.21065 1.03753 0.84472 1.06109 1.21405 0.98355 0.92013 1.18201 1.20834 0.80428 0.87064 0.88314 1.86119 1.15462 1.34550 1.83962 1.21598 0.99273 0.74134 0.92662 0.88916 1.21149 1.05598 0.96547 1.36001 0.91014 1.25752 1.01555 0.94494 0.95620 1.69944 1.39974 1.01448 1.42161 0.85197 0.77943 0.77723 0.78726 1.19062 1.20284 1.19195 1.25340 0.82085 1.06390 0.94306 1.98636 1.39863 1.99064 1.82744 1.49446 1.09414 1.06567 1.49562 1.79015 1.17875 0.83307 1.33329 0.83529 0.89495 0.89232 0.86594 0.88931 0.86129 0.77332 0.91468 0.86442 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 10.36 113.37 1.17 -1.87 16 2 S 0.01 0.33 22.81 -56.49 -1.29 -0.96 16 3 C 0.22 9.72 8.24 180.48 1.49 11.20 16 4 N -0.55 -23.62 10.80 -200.09 -2.16 -25.78 16 5 C 0.46 19.51 8.99 261.60 2.35 21.87 16 6 N -0.52 -18.09 10.40 -186.03 -1.93 -20.03 16 7 C 0.26 6.91 6.81 42.85 0.29 7.20 16 8 C -0.10 -1.26 10.18 71.24 0.73 -0.53 16 9 C -0.27 -7.90 9.67 22.22 0.21 -7.69 16 10 C 0.40 16.02 6.51 83.70 0.54 16.57 16 11 O -0.30 -13.47 9.73 -85.37 -0.83 -14.30 16 12 C 0.18 9.02 2.18 29.85 0.06 9.09 16 13 H 0.09 5.20 4.44 -11.01 -0.05 5.15 16 14 C -0.56 -29.45 8.89 25.60 0.23 -29.22 16 15 H 0.07 3.75 7.81 -2.91 -0.02 3.72 16 16 C 0.03 1.45 5.29 84.65 0.45 1.90 16 17 N -0.90 -48.34 11.29 21.45 0.24 -48.10 16 18 Si 0.98 40.67 29.54 68.60 2.03 42.70 16 19 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 20 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 C -0.02 -0.89 6.17 71.99 0.44 -0.44 16 23 Cl -0.23 -10.41 24.49 -2.72 -0.07 -10.47 16 24 N -0.36 -15.84 2.69 -309.01 -0.83 -16.68 16 25 N -0.30 -14.45 6.87 -58.62 -0.40 -14.86 16 26 H 0.15 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.12 0.85 8.08 -2.39 -0.02 0.83 16 32 H 0.21 4.20 8.06 -2.91 -0.02 4.17 16 33 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 34 H 0.12 6.20 5.95 -2.39 -0.01 6.18 16 35 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 Total: -1.00 -69.49 324.73 3.83 -65.66 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 1.11 Total: 14.73 kcal Atomic # 6 Polarization: 20.10 SS G_CDS: 7.97 Total: 28.08 kcal Atomic # 7 Polarization: -120.35 SS G_CDS: -5.09 Total: -125.44 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.83 Total: -14.30 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -1.29 Total: -0.96 kcal Atomic # 17 Polarization: -10.41 SS G_CDS: -0.07 Total: -10.47 kcal Total: -69.49 3.83 -65.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225536609.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.170 kcal (2) G-P(sol) polarization free energy of solvation -69.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds