Wall clock time and date at job start Tue Mar 31 2020 14:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47165 * 2 1 4 4 H 1.08996 * 109.47348 * 304.62189 * 3 2 1 5 5 C 1.53005 * 109.47029 * 184.61835 * 3 2 1 6 6 Br 1.96600 * 109.46902 * 172.23390 * 5 3 2 7 7 O 1.42901 * 109.47133 * 64.62277 * 3 2 1 8 8 C 1.35742 * 117.00043 * 204.14426 * 7 3 2 9 9 C 1.41193 * 120.28390 * 253.60199 * 8 7 3 10 10 C 1.41179 * 120.26468 * 359.95500 * 9 8 7 11 11 H 1.07996 * 120.00028 * 27.77253 * 10 9 8 12 12 C 1.39924 * 119.99810 * 207.77528 * 10 9 8 13 13 N 1.30872 * 120.00064 * 13.12324 * 12 10 9 14 14 Si 1.86799 * 119.99969 * 193.12321 * 12 10 9 15 15 H 1.48499 * 109.46904 * 89.99738 * 14 12 10 16 16 H 1.48497 * 109.47302 * 209.99803 * 14 12 10 17 17 H 1.48497 * 109.47023 * 329.99892 * 14 12 10 18 18 C 1.40771 * 119.46920 * 179.97438 * 9 8 7 19 19 C 1.36489 * 120.01972 * 359.97438 * 18 9 8 20 20 C 1.38771 * 120.58656 * 0.02562 * 19 18 9 21 21 C 1.38713 * 120.53261 * 359.73932 * 20 19 18 22 22 O 1.36007 * 120.01986 * 180.28169 * 21 20 19 23 23 C 1.42904 * 117.00172 * 0.22830 * 22 21 20 24 24 H 1.09003 * 109.47312 * 64.40592 * 1 2 3 25 25 H 1.08996 * 109.47512 * 184.40588 * 1 2 3 26 26 H 1.09004 * 109.47245 * 304.40956 * 1 2 3 27 27 H 1.09009 * 109.47104 * 240.00277 * 2 1 3 28 28 H 1.08997 * 109.47309 * 120.00477 * 2 1 3 29 29 H 1.08994 * 109.47428 * 292.23885 * 5 3 2 30 30 H 1.08999 * 109.46965 * 52.23702 * 5 3 2 31 31 H 0.96999 * 119.99799 * 180.02562 * 13 12 10 32 32 H 1.07993 * 119.98652 * 180.02562 * 18 9 8 33 33 H 1.07999 * 119.70624 * 179.97438 * 19 18 9 34 34 H 1.08001 * 119.73324 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.46586 * 60.00533 * 23 22 21 36 36 H 1.08994 * 109.47065 * 180.02562 * 23 22 21 37 37 H 1.08998 * 109.47288 * 300.00662 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6106 1.9797 -0.8456 5 6 3.5656 1.4440 -0.1162 6 35 4.2019 3.2873 -0.3663 7 8 1.6544 2.0841 1.2173 8 6 1.5622 3.4382 1.1978 9 6 2.5455 4.2280 1.8326 10 6 3.6323 3.6157 2.4936 11 1 3.9830 2.6462 2.1721 12 6 4.2550 4.2649 3.5653 13 7 3.6854 5.3038 4.1213 14 14 5.8994 3.6490 4.2025 15 1 6.9993 4.3303 3.4736 16 1 6.0100 3.9439 5.6536 17 1 5.9962 2.1830 3.9865 18 6 2.4332 5.6309 1.8013 19 6 1.3805 6.2176 1.1607 20 6 0.4131 5.4429 0.5363 21 6 0.5030 4.0587 0.5484 22 8 -0.4478 3.3097 -0.0718 23 6 -1.5084 4.0147 -0.7201 24 1 -0.3634 0.4440 -0.9268 25 1 -0.3634 -1.0246 0.0789 26 1 -0.3634 0.5808 0.8479 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.9997 1.0301 0.7939 30 1 3.8655 0.8371 -0.9704 31 1 4.1173 5.7540 4.8640 32 1 3.1808 6.2431 2.2837 33 1 1.2991 7.2943 1.1402 34 1 -0.4139 5.9216 0.0331 35 1 -1.0948 4.6618 -1.4936 36 1 -2.1960 3.3004 -1.1729 37 1 -2.0434 4.6196 0.0119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225841697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:09 Heat of formation + Delta-G solvation = -71.787761 kcal Electronic energy + Delta-G solvation = -21441.378019 eV Core-core repulsion = 18230.018394 eV Total energy + Delta-G solvation = -3211.359625 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.86257 -38.97629 -37.76367 -35.18140 -34.70109 -32.18039 -31.16640 -30.10517 -28.81588 -27.92411 -26.73291 -24.29698 -22.72885 -22.47412 -21.59200 -19.53106 -18.50209 -17.42720 -17.17329 -16.49900 -16.40565 -15.95977 -15.43393 -15.15398 -14.84589 -14.63158 -14.41464 -14.18233 -13.61404 -13.41058 -13.15303 -13.05395 -12.82059 -12.64883 -12.44132 -12.28556 -12.06852 -11.99414 -11.86313 -11.55309 -11.52753 -11.23899 -10.97320 -10.72399 -10.27354 -10.20982 -8.76791 -8.61963 -8.39586 -6.15478 0.94054 1.10167 1.19611 1.40354 1.50839 1.56055 2.24914 2.74748 2.82495 3.18833 3.76629 3.87664 4.10751 4.28616 4.38394 4.39477 4.47968 4.49710 4.56838 4.60181 4.69147 4.80591 4.92867 5.07180 5.13289 5.14040 5.21006 5.31271 5.41641 5.54256 5.59068 5.90067 6.03621 6.14146 6.25223 6.65134 6.78215 6.98779 7.07898 7.48109 8.44206 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.013062 B = 0.007831 C = 0.006457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.057260 B = 3574.700047 C = 4335.652571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 C 0.086 3.914 4 H 0.052 0.948 5 C -0.103 4.103 6 Br -0.164 7.164 7 O -0.312 6.312 8 C -0.060 4.060 9 C 0.138 3.862 10 C -0.435 4.435 11 H 0.081 0.919 12 C 0.033 3.967 13 N -0.828 5.828 14 Si 0.962 3.038 15 H -0.265 1.265 16 H -0.273 1.273 17 H -0.257 1.257 18 C -0.198 4.198 19 C -0.087 4.087 20 C -0.320 4.320 21 C 0.119 3.881 22 O -0.330 6.330 23 C 0.026 3.974 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.037 0.963 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.283 0.717 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.051 0.949 36 H 0.117 0.883 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.666 -7.053 -9.255 11.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.146 4.146 3 C 0.029 3.971 4 H 0.070 0.930 5 C -0.219 4.219 6 Br -0.083 7.083 7 O -0.228 6.228 8 C -0.105 4.105 9 C 0.135 3.865 10 C -0.464 4.464 11 H 0.099 0.901 12 C -0.180 4.180 13 N -0.455 5.455 14 Si 0.784 3.216 15 H -0.190 1.190 16 H -0.198 1.198 17 H -0.180 1.180 18 C -0.217 4.217 19 C -0.105 4.105 20 C -0.339 4.339 21 C 0.074 3.926 22 O -0.244 6.244 23 C -0.069 4.069 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.056 0.944 27 H 0.119 0.881 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.145 0.855 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.138 0.862 35 H 0.070 0.930 36 H 0.135 0.865 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.458 -6.597 -9.008 11.260 hybrid contribution 0.562 0.347 0.352 0.749 sum -0.896 -6.250 -8.656 10.714 Atomic orbital electron populations 1.21561 0.94751 1.01499 1.01542 1.21574 0.97216 0.92349 1.03481 1.22531 0.90453 0.95601 0.88526 0.92983 1.25570 0.99710 0.89922 1.06725 1.97428 1.89605 1.23678 1.97601 1.86068 1.87179 1.16485 1.33100 1.18250 0.96268 0.82270 1.13751 1.17516 0.89293 0.91127 0.88557 1.19591 1.11556 1.04063 1.11240 0.90135 1.26604 1.01115 0.94264 0.96061 1.69913 1.37793 1.18455 1.19328 0.85475 0.78367 0.80063 0.77674 1.19029 1.19757 1.18017 1.20823 1.00541 0.94821 1.05557 1.20448 0.94584 0.98376 0.97138 1.20533 1.05530 0.91852 1.16026 1.19266 0.89174 0.90357 0.93831 1.86023 1.34854 1.35806 1.67710 1.23098 0.88641 0.98715 0.96406 0.92902 0.91111 0.94409 0.88110 0.91268 0.88554 0.85493 0.90638 0.88110 0.87539 0.86228 0.93039 0.86515 0.93304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.86 71.98 0.71 -2.94 16 2 C -0.11 -2.89 5.64 30.59 0.17 -2.72 16 3 C 0.09 3.02 2.16 30.60 0.07 3.09 16 4 H 0.05 1.95 7.28 -2.39 -0.02 1.93 16 5 C -0.10 -3.37 5.68 71.98 0.41 -2.96 16 6 Br -0.16 -6.53 27.70 -20.37 -0.56 -7.10 16 7 O -0.31 -14.12 8.33 -76.76 -0.64 -14.76 16 8 C -0.06 -2.94 4.62 23.15 0.11 -2.83 16 9 C 0.14 7.24 3.69 -21.21 -0.08 7.16 16 10 C -0.43 -22.54 6.86 23.40 0.16 -22.38 16 11 H 0.08 4.07 5.42 -2.91 -0.02 4.05 16 12 C 0.03 1.68 5.21 85.24 0.44 2.12 16 13 N -0.83 -43.52 10.90 21.83 0.24 -43.28 16 14 Si 0.96 39.03 29.58 68.60 2.03 41.06 16 15 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 16 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 17 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 18 C -0.20 -10.37 8.61 22.48 0.19 -10.18 16 19 C -0.09 -4.10 9.96 21.99 0.22 -3.88 16 20 C -0.32 -14.16 9.05 22.51 0.20 -13.95 16 21 C 0.12 5.42 6.41 22.54 0.14 5.57 16 22 O -0.33 -12.89 9.61 -79.72 -0.77 -13.66 16 23 C 0.03 0.75 9.81 113.37 1.11 1.86 16 24 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.04 1.25 7.70 -2.38 -0.02 1.23 16 27 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.10 3.24 7.43 -2.39 -0.02 3.22 16 30 H 0.13 3.11 8.13 -2.39 -0.02 3.09 16 31 H 0.28 13.65 8.30 -92.71 -0.77 12.88 16 32 H 0.10 5.59 6.22 -2.91 -0.02 5.57 16 33 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 34 H 0.12 4.55 6.27 -2.91 -0.02 4.53 16 35 H 0.05 1.39 7.67 -2.39 -0.02 1.37 16 36 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.05 1.36 7.65 -2.39 -0.02 1.34 16 Total: -1.00 -61.41 315.80 5.23 -56.18 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 1.07 Total: 23.60 kcal Atomic # 6 Polarization: -45.91 SS G_CDS: 3.86 Total: -42.04 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.24 Total: -43.28 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -1.40 Total: -28.42 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Atomic # 35 Polarization: -6.53 SS G_CDS: -0.56 Total: -7.10 kcal Total: -61.41 5.23 -56.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225841697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.603 kcal (2) G-P(sol) polarization free energy of solvation -61.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds