Wall clock time and date at job start Tue Mar 31 2020 14:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47068 * 2 1 4 4 H 1.08993 * 109.46986 * 53.62960 * 3 2 1 5 5 C 1.53004 * 109.47151 * 173.63046 * 3 2 1 6 6 Br 1.96596 * 109.47357 * 188.17690 * 5 3 2 7 7 O 1.42899 * 109.47180 * 293.62609 * 3 2 1 8 8 C 1.35739 * 117.00130 * 295.00841 * 7 3 2 9 9 C 1.41192 * 120.28165 * 261.44123 * 8 7 3 10 10 C 1.41175 * 120.26730 * 0.02562 * 9 8 7 11 11 H 1.08004 * 119.99790 * 328.48787 * 10 9 8 12 12 C 1.39926 * 120.00457 * 148.48305 * 10 9 8 13 13 N 1.30866 * 120.00048 * 355.78535 * 12 10 9 14 14 Si 1.86801 * 120.00239 * 175.78053 * 12 10 9 15 15 H 1.48504 * 109.47199 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47139 * 120.00218 * 14 12 10 17 17 H 1.48495 * 109.47512 * 240.00578 * 14 12 10 18 18 C 1.40777 * 119.47342 * 179.75313 * 9 8 7 19 19 C 1.36492 * 120.01644 * 0.54630 * 18 9 8 20 20 C 1.38769 * 120.58495 * 359.70724 * 19 18 9 21 21 C 1.38713 * 120.53514 * 0.02562 * 20 19 18 22 22 O 1.36007 * 120.02034 * 180.02562 * 21 20 19 23 23 C 1.42895 * 117.00359 * 359.97438 * 22 21 20 24 24 H 1.09005 * 109.46916 * 292.10963 * 1 2 3 25 25 H 1.08995 * 109.46952 * 52.11069 * 1 2 3 26 26 H 1.08995 * 109.46918 * 172.11494 * 1 2 3 27 27 H 1.09005 * 109.47384 * 239.99862 * 2 1 3 28 28 H 1.08998 * 109.47285 * 119.99883 * 2 1 3 29 29 H 1.09000 * 109.47445 * 68.17052 * 5 3 2 30 30 H 1.08998 * 109.46825 * 308.17776 * 5 3 2 31 31 H 0.97004 * 120.00664 * 179.97438 * 13 12 10 32 32 H 1.07991 * 119.99535 * 180.25341 * 18 9 8 33 33 H 1.07997 * 119.70721 * 179.72290 * 19 18 9 34 34 H 1.07998 * 119.73661 * 179.97438 * 20 19 18 35 35 H 1.08999 * 109.46589 * 299.99812 * 23 22 21 36 36 H 1.09002 * 109.47482 * 59.99330 * 23 22 21 37 37 H 1.09003 * 109.47425 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5866 1.9881 0.8274 5 6 3.5616 1.4455 0.1600 6 35 4.1894 3.2899 0.4227 7 8 1.6897 2.0716 -1.2343 8 6 2.2603 1.5765 -2.3621 9 6 3.3921 2.2071 -2.9232 10 6 3.9400 3.3576 -2.3157 11 1 3.2979 4.0472 -1.7877 12 6 5.3148 3.6046 -2.3973 13 7 6.1044 2.7288 -2.9649 14 14 6.0233 5.1846 -1.6964 15 1 4.9291 6.0013 -1.1123 16 1 7.0139 4.8568 -0.6397 17 1 6.6900 5.9514 -2.7792 18 6 3.9734 1.6761 -4.0902 19 6 3.4363 0.5668 -4.6767 20 6 2.3208 -0.0511 -4.1295 21 6 1.7324 0.4488 -2.9772 22 8 0.6396 -0.1654 -2.4496 23 6 0.1506 -1.3203 -3.1344 24 1 -0.3633 0.3868 0.9521 25 1 -0.3633 0.6311 -0.8110 26 1 -0.3633 -1.0179 -0.1410 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.0221 1.0291 -0.7359 30 1 3.8372 0.8413 1.0244 31 1 7.0575 2.9002 -3.0219 32 1 4.8417 2.1493 -4.5243 33 1 3.8836 0.1663 -5.5744 34 1 1.9068 -0.9279 -4.6052 35 1 -0.1293 -1.0479 -4.1519 36 1 0.9294 -2.0824 -3.1635 37 1 -0.7215 -1.7114 -2.6103 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225841698.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:12 Heat of formation + Delta-G solvation = -47.952936 kcal Electronic energy + Delta-G solvation = -21853.314376 eV Core-core repulsion = 18642.988306 eV Total energy + Delta-G solvation = -3210.326069 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.49111 -37.36653 -36.11534 -33.46222 -32.81119 -30.61883 -29.40710 -28.55013 -27.36246 -26.44322 -25.10630 -22.80490 -21.53199 -20.68680 -19.58013 -17.72195 -16.48322 -15.94578 -15.55324 -15.41294 -14.83207 -14.67712 -14.08992 -13.42843 -13.10596 -13.02839 -12.73777 -12.41971 -12.01514 -11.86473 -11.67974 -11.46915 -11.22161 -11.13480 -10.90454 -10.82718 -10.42870 -10.36128 -10.24155 -10.00536 -9.81221 -9.54032 -9.29659 -9.00558 -8.52215 -8.22650 -7.24834 -6.87857 -6.66527 -4.25225 2.53451 2.67216 2.93894 3.13693 3.16393 3.24030 3.98227 4.21977 4.61096 4.90785 5.32125 5.56926 5.59436 5.62004 5.65379 5.73924 5.77704 5.86888 6.01921 6.09885 6.19896 6.26480 6.40677 6.44668 6.56110 6.86171 6.89445 6.97920 7.01879 7.16845 7.31485 7.66550 7.77887 7.95765 8.09718 8.43287 8.52164 8.79570 8.90579 9.20082 10.19528 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.016714 B = 0.007965 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.836140 B = 3514.527796 C = 4868.137062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.093 3.907 4 H 0.094 0.906 5 C -0.093 4.093 6 Br -0.147 7.147 7 O -0.292 6.292 8 C -0.067 4.067 9 C 0.123 3.877 10 C -0.415 4.415 11 H 0.094 0.906 12 C 0.091 3.909 13 N -0.796 5.796 14 Si 0.886 3.114 15 H -0.254 1.254 16 H -0.269 1.269 17 H -0.275 1.275 18 C -0.174 4.174 19 C -0.081 4.081 20 C -0.321 4.321 21 C 0.127 3.873 22 O -0.309 6.309 23 C 0.029 3.971 24 H 0.034 0.966 25 H 0.076 0.924 26 H 0.040 0.960 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.278 0.722 32 H 0.127 0.873 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.719 -3.777 5.164 7.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.036 3.964 4 H 0.111 0.889 5 C -0.209 4.209 6 Br -0.067 7.067 7 O -0.208 6.208 8 C -0.113 4.113 9 C 0.120 3.880 10 C -0.444 4.444 11 H 0.112 0.888 12 C -0.127 4.127 13 N -0.421 5.421 14 Si 0.712 3.288 15 H -0.178 1.178 16 H -0.194 1.194 17 H -0.201 1.201 18 C -0.193 4.193 19 C -0.100 4.100 20 C -0.341 4.341 21 C 0.083 3.917 22 O -0.223 6.223 23 C -0.066 4.066 24 H 0.054 0.946 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.128 0.872 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.467 -2.972 5.406 7.076 hybrid contribution 0.691 -0.375 -0.009 0.787 sum -2.775 -3.347 5.396 6.930 Atomic orbital electron populations 1.21565 0.95114 1.00939 1.00828 1.22159 0.97340 0.97026 1.01918 1.22457 0.90726 0.93836 0.89400 0.88850 1.25359 0.99897 0.89924 1.05718 1.97127 1.89941 1.23111 1.96473 1.86229 1.66498 1.56893 1.11166 1.17881 1.03491 0.98354 0.91541 1.17603 0.87771 0.92135 0.90532 1.19715 0.92431 1.05418 1.26834 0.88831 1.25750 0.97331 0.96831 0.92770 1.69795 1.05661 1.33250 1.33417 0.86453 0.80082 0.82511 0.79786 1.17763 1.19373 1.20090 1.21107 1.03052 0.98598 0.96553 1.20252 0.95187 0.96392 0.98159 1.20283 1.04817 1.06628 1.02342 1.19201 0.86836 0.92249 0.93405 1.86350 1.43658 1.41488 1.50801 1.22763 0.98470 0.88071 0.97341 0.94650 0.90493 0.94076 0.90107 0.93209 0.87241 0.89890 0.91058 0.85551 0.89377 0.88794 0.93760 0.93864 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.40 37.16 0.31 -1.65 16 2 C -0.15 -2.45 4.85 -26.73 -0.13 -2.58 16 3 C 0.09 1.74 2.70 -26.73 -0.07 1.67 16 4 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 5 C -0.09 -1.78 5.42 37.16 0.20 -1.57 16 6 Br -0.15 -2.99 25.74 -68.01 -1.75 -4.74 16 7 O -0.29 -6.55 8.65 -33.46 -0.29 -6.84 16 8 C -0.07 -1.58 4.57 -38.22 -0.17 -1.76 16 9 C 0.12 3.10 4.67 -106.70 -0.50 2.60 16 10 C -0.42 -10.34 5.27 -37.84 -0.20 -10.54 16 11 H 0.09 2.40 6.61 -52.48 -0.35 2.05 16 12 C 0.09 2.19 4.60 -17.33 -0.08 2.11 16 13 N -0.80 -19.48 10.69 55.55 0.59 -18.88 16 14 Si 0.89 19.08 26.89 -169.99 -4.57 14.51 16 15 H -0.25 -5.49 7.11 56.52 0.40 -5.09 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 C -0.17 -4.30 8.60 -39.25 -0.34 -4.64 16 19 C -0.08 -1.84 9.96 -40.02 -0.40 -2.23 16 20 C -0.32 -6.92 9.05 -39.21 -0.35 -7.28 16 21 C 0.13 2.79 5.52 -39.17 -0.22 2.58 16 22 O -0.31 -5.82 4.54 -34.30 -0.16 -5.97 16 23 C 0.03 0.43 9.81 101.05 0.99 1.42 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.08 1.36 6.09 -51.93 -0.32 1.04 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.08 1.53 5.12 -51.93 -0.27 1.26 16 28 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 29 H 0.11 2.44 6.37 -51.93 -0.33 2.11 16 30 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 31 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 32 H 0.13 3.24 6.16 -52.49 -0.32 2.92 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.09 1.80 6.27 -52.49 -0.33 1.47 16 35 H 0.04 0.63 7.66 -51.93 -0.40 0.24 16 36 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 298.32 15.07 4.50 4.50 Total: -1.00 -25.83 298.32 -7.43 -33.27 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.80 Total: 6.04 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -0.96 Total: -21.87 kcal Atomic # 7 Polarization: -19.48 SS G_CDS: 0.59 Total: -18.88 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.45 Total: -12.81 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.57 Total: 14.51 kcal Atomic # 35 Polarization: -2.99 SS G_CDS: -1.75 Total: -4.74 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -25.83 -7.43 -33.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225841698.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.688 kcal (2) G-P(sol) polarization free energy of solvation -25.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds