Wall clock time and date at job start Tue Mar 31 2020 14:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47068 * 2 1 4 4 H 1.08993 * 109.46986 * 53.62960 * 3 2 1 5 5 C 1.53004 * 109.47151 * 173.63046 * 3 2 1 6 6 Br 1.96596 * 109.47357 * 188.17690 * 5 3 2 7 7 O 1.42899 * 109.47180 * 293.62609 * 3 2 1 8 8 C 1.35739 * 117.00130 * 295.00841 * 7 3 2 9 9 C 1.41192 * 120.28165 * 261.44123 * 8 7 3 10 10 C 1.41175 * 120.26730 * 0.02562 * 9 8 7 11 11 H 1.08004 * 119.99790 * 328.48787 * 10 9 8 12 12 C 1.39926 * 120.00457 * 148.48305 * 10 9 8 13 13 N 1.30866 * 120.00048 * 355.78535 * 12 10 9 14 14 Si 1.86801 * 120.00239 * 175.78053 * 12 10 9 15 15 H 1.48504 * 109.47199 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47139 * 120.00218 * 14 12 10 17 17 H 1.48495 * 109.47512 * 240.00578 * 14 12 10 18 18 C 1.40777 * 119.47342 * 179.75313 * 9 8 7 19 19 C 1.36492 * 120.01644 * 0.54630 * 18 9 8 20 20 C 1.38769 * 120.58495 * 359.70724 * 19 18 9 21 21 C 1.38713 * 120.53514 * 0.02562 * 20 19 18 22 22 O 1.36007 * 120.02034 * 180.02562 * 21 20 19 23 23 C 1.42895 * 117.00359 * 359.97438 * 22 21 20 24 24 H 1.09005 * 109.46916 * 292.10963 * 1 2 3 25 25 H 1.08995 * 109.46952 * 52.11069 * 1 2 3 26 26 H 1.08995 * 109.46918 * 172.11494 * 1 2 3 27 27 H 1.09005 * 109.47384 * 239.99862 * 2 1 3 28 28 H 1.08998 * 109.47285 * 119.99883 * 2 1 3 29 29 H 1.09000 * 109.47445 * 68.17052 * 5 3 2 30 30 H 1.08998 * 109.46825 * 308.17776 * 5 3 2 31 31 H 0.97004 * 120.00664 * 179.97438 * 13 12 10 32 32 H 1.07991 * 119.99535 * 180.25341 * 18 9 8 33 33 H 1.07997 * 119.70721 * 179.72290 * 19 18 9 34 34 H 1.07998 * 119.73661 * 179.97438 * 20 19 18 35 35 H 1.08999 * 109.46589 * 299.99812 * 23 22 21 36 36 H 1.09002 * 109.47482 * 59.99330 * 23 22 21 37 37 H 1.09003 * 109.47425 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5866 1.9881 0.8274 5 6 3.5616 1.4455 0.1600 6 35 4.1894 3.2899 0.4227 7 8 1.6897 2.0716 -1.2343 8 6 2.2603 1.5765 -2.3621 9 6 3.3921 2.2071 -2.9232 10 6 3.9400 3.3576 -2.3157 11 1 3.2979 4.0472 -1.7877 12 6 5.3148 3.6046 -2.3973 13 7 6.1044 2.7288 -2.9649 14 14 6.0233 5.1846 -1.6964 15 1 4.9291 6.0013 -1.1123 16 1 7.0139 4.8568 -0.6397 17 1 6.6900 5.9514 -2.7792 18 6 3.9734 1.6761 -4.0902 19 6 3.4363 0.5668 -4.6767 20 6 2.3208 -0.0511 -4.1295 21 6 1.7324 0.4488 -2.9772 22 8 0.6396 -0.1654 -2.4496 23 6 0.1506 -1.3203 -3.1344 24 1 -0.3633 0.3868 0.9521 25 1 -0.3633 0.6311 -0.8110 26 1 -0.3633 -1.0179 -0.1410 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.0221 1.0291 -0.7359 30 1 3.8372 0.8413 1.0244 31 1 7.0575 2.9002 -3.0219 32 1 4.8417 2.1493 -4.5243 33 1 3.8836 0.1663 -5.5744 34 1 1.9068 -0.9279 -4.6052 35 1 -0.1293 -1.0479 -4.1519 36 1 0.9294 -2.0824 -3.1635 37 1 -0.7215 -1.7114 -2.6103 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225841698.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:12 Heat of formation + Delta-G solvation = -60.451309 kcal Electronic energy + Delta-G solvation = -21853.856346 eV Core-core repulsion = 18642.988306 eV Total energy + Delta-G solvation = -3210.868040 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.10965 -38.90159 -37.80567 -35.23171 -34.31493 -32.09983 -31.17794 -30.14756 -28.84034 -27.89291 -26.84070 -24.24197 -23.11138 -22.39190 -21.17690 -19.41326 -18.03460 -17.66274 -17.19319 -17.03397 -16.49323 -16.08743 -15.52498 -15.11860 -14.73255 -14.56344 -14.18253 -13.93977 -13.54732 -13.46545 -13.26943 -13.04399 -12.71506 -12.66298 -12.48298 -12.38490 -11.99714 -11.92418 -11.74907 -11.55233 -11.36858 -11.19152 -11.01604 -10.63567 -10.12073 -9.87755 -9.03392 -8.61829 -8.42942 -6.10158 0.88696 0.98826 1.18984 1.38085 1.44434 1.53971 2.23315 2.76386 2.86593 3.25839 3.76806 3.96265 4.17006 4.23057 4.39458 4.41993 4.54122 4.57600 4.60219 4.69572 4.74905 4.85668 5.03488 5.06984 5.15021 5.21008 5.24246 5.38083 5.45007 5.63863 5.71165 5.91323 6.03929 6.17816 6.27058 6.67725 6.78651 6.97455 7.08697 7.47695 8.41604 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.016714 B = 0.007965 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.836140 B = 3514.527796 C = 4868.137062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.140 4.140 3 C 0.092 3.908 4 H 0.108 0.892 5 C -0.084 4.084 6 Br -0.161 7.161 7 O -0.311 6.311 8 C -0.072 4.072 9 C 0.101 3.899 10 C -0.428 4.428 11 H 0.079 0.921 12 C 0.071 3.929 13 N -0.820 5.820 14 Si 0.922 3.078 15 H -0.258 1.258 16 H -0.264 1.264 17 H -0.269 1.269 18 C -0.201 4.201 19 C -0.084 4.084 20 C -0.318 4.318 21 C 0.127 3.873 22 O -0.310 6.310 23 C 0.020 3.980 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.282 0.718 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.996 -5.320 6.043 9.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.178 4.178 3 C 0.035 3.965 4 H 0.126 0.874 5 C -0.200 4.200 6 Br -0.081 7.081 7 O -0.228 6.228 8 C -0.117 4.117 9 C 0.097 3.903 10 C -0.457 4.457 11 H 0.097 0.903 12 C -0.145 4.145 13 N -0.446 5.446 14 Si 0.746 3.254 15 H -0.182 1.182 16 H -0.189 1.189 17 H -0.195 1.195 18 C -0.220 4.220 19 C -0.103 4.103 20 C -0.338 4.338 21 C 0.082 3.918 22 O -0.224 6.224 23 C -0.075 4.075 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.132 0.868 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.140 0.860 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.757 -4.529 6.279 9.087 hybrid contribution 0.928 -0.051 -0.269 0.967 sum -3.829 -4.580 6.010 8.471 Atomic orbital electron populations 1.21494 0.93850 1.01646 1.00810 1.22105 0.98348 0.95258 1.02118 1.22655 0.90490 0.95330 0.88048 0.87426 1.25347 0.99985 0.89225 1.05432 1.97110 1.90195 1.24449 1.96310 1.86134 1.66651 1.57989 1.12000 1.17981 1.02959 0.98599 0.92163 1.17858 0.88788 0.92717 0.90916 1.19570 0.92731 1.05730 1.27714 0.90290 1.26107 0.97208 0.98351 0.92795 1.69834 1.05960 1.34299 1.34547 0.85910 0.79518 0.80417 0.79528 1.18153 1.18894 1.19477 1.21047 1.03489 1.00076 0.97419 1.20512 0.95396 0.95695 0.98684 1.20610 1.04110 1.07075 1.02006 1.19220 0.87507 0.91909 0.93130 1.86363 1.42243 1.42685 1.51124 1.23096 0.99762 0.86700 0.97953 0.92971 0.92892 0.92254 0.92187 0.90614 0.90558 0.86804 0.90674 0.87275 0.87327 0.86019 0.93341 0.93146 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.33 8.40 71.98 0.60 -2.73 16 2 C -0.14 -4.32 4.85 30.59 0.15 -4.17 16 3 C 0.09 3.30 2.70 30.60 0.08 3.38 16 4 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 5 C -0.08 -3.15 5.42 71.98 0.39 -2.76 16 6 Br -0.16 -6.51 25.74 -20.37 -0.52 -7.03 16 7 O -0.31 -13.90 8.65 -76.73 -0.66 -14.56 16 8 C -0.07 -3.38 4.57 23.15 0.11 -3.28 16 9 C 0.10 5.17 4.67 -21.21 -0.10 5.07 16 10 C -0.43 -21.90 5.27 23.40 0.12 -21.78 16 11 H 0.08 4.17 6.61 -2.91 -0.02 4.15 16 12 C 0.07 3.48 4.60 85.25 0.39 3.87 16 13 N -0.82 -41.20 10.69 21.83 0.23 -40.96 16 14 Si 0.92 39.44 26.89 68.60 1.84 41.28 16 15 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 16 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 18 C -0.20 -10.16 8.60 22.48 0.19 -9.97 16 19 C -0.08 -3.78 9.96 21.99 0.22 -3.56 16 20 C -0.32 -13.23 9.05 22.51 0.20 -13.02 16 21 C 0.13 5.44 5.52 22.54 0.12 5.57 16 22 O -0.31 -10.98 4.54 -79.73 -0.36 -11.34 16 23 C 0.02 0.51 9.81 113.37 1.11 1.63 16 24 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.05 1.74 6.09 -2.39 -0.01 1.72 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 2.14 5.12 -2.38 -0.01 2.12 16 28 H 0.08 1.95 8.11 -2.39 -0.02 1.93 16 29 H 0.08 3.42 6.37 -2.39 -0.02 3.41 16 30 H 0.11 3.46 8.11 -2.39 -0.02 3.44 16 31 H 0.28 13.17 8.30 -92.71 -0.77 12.40 16 32 H 0.11 5.82 6.16 -2.92 -0.02 5.80 16 33 H 0.11 4.30 8.06 -2.91 -0.02 4.27 16 34 H 0.12 4.30 6.27 -2.91 -0.02 4.29 16 35 H 0.05 1.23 7.66 -2.39 -0.02 1.21 16 36 H 0.05 1.25 7.66 -2.39 -0.02 1.23 16 37 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -56.30 298.32 5.21 -51.10 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 1.08 Total: 23.27 kcal Atomic # 6 Polarization: -45.35 SS G_CDS: 3.60 Total: -41.75 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.23 Total: -40.96 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -1.03 Total: -25.90 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 1.84 Total: 41.28 kcal Atomic # 35 Polarization: -6.51 SS G_CDS: -0.52 Total: -7.03 kcal Total: -56.30 5.21 -51.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225841698.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.356 kcal (2) G-P(sol) polarization free energy of solvation -56.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds