Wall clock time and date at job start Tue Mar 31 2020 15:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00291 * 2 1 4 4 H 1.48496 * 109.47239 * 269.99903 * 3 2 1 5 5 H 1.48500 * 109.46978 * 29.99660 * 3 2 1 6 6 H 1.48498 * 109.47364 * 149.99585 * 3 2 1 7 7 C 1.37878 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99836 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00361 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46641 * 300.00151 * 9 7 2 11 11 C 1.53003 * 109.47006 * 59.99812 * 9 7 2 12 12 Cl 1.80296 * 109.47068 * 185.00220 * 11 9 7 13 13 O 1.42893 * 109.47381 * 179.97438 * 9 7 2 14 14 C 1.35875 * 117.00027 * 146.98477 * 13 9 7 15 15 C 1.38621 * 119.94235 * 176.78929 * 14 13 9 16 16 C 1.38447 * 120.37662 * 180.23314 * 15 14 13 17 17 C 1.38875 * 120.12082 * 359.49053 * 16 15 14 18 18 C 1.40467 * 119.59780 * 0.24904 * 17 16 15 19 19 C 1.38914 * 119.95450 * 0.02562 * 18 17 16 20 20 C 1.48264 * 107.82883 * 179.97438 * 18 17 16 21 21 O 1.21422 * 126.46296 * 180.02562 * 20 18 17 22 22 C 1.48155 * 107.07373 * 0.02562 * 20 18 17 23 23 C 1.39005 * 132.28254 * 180.02562 * 22 20 18 24 24 C 1.38503 * 119.87606 * 179.97438 * 23 22 20 25 25 C 1.38137 * 120.26173 * 0.02562 * 24 23 22 26 26 C 1.38612 * 120.43957 * 359.95854 * 25 24 23 27 27 C 1.38790 * 120.02310 * 0.04532 * 26 25 24 28 28 H 0.96998 * 119.99878 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46892 * 305.00097 * 11 9 7 30 30 H 1.08999 * 109.46813 * 64.99843 * 11 9 7 31 31 H 1.07996 * 119.80978 * 359.97438 * 15 14 13 32 32 H 1.07999 * 119.93650 * 179.76206 * 16 15 14 33 33 H 1.08005 * 120.08218 * 179.97438 * 19 18 17 34 34 H 1.07990 * 120.06228 * 359.97025 * 23 22 20 35 35 H 1.07998 * 119.87221 * 179.97438 * 24 23 22 36 36 H 1.07996 * 119.78399 * 179.97438 * 25 24 23 37 37 H 1.07996 * 119.99202 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3718 -2.5805 -1.2490 12 17 -0.6387 -4.0719 -1.1769 13 8 2.1796 -3.5853 0.0005 14 6 1.8088 -4.7139 0.6602 15 6 2.6335 -5.8279 0.6430 16 6 2.2624 -6.9841 1.3080 17 6 1.0633 -7.0316 2.0070 18 6 0.2286 -5.9021 2.0303 19 6 0.6050 -4.7475 1.3559 20 6 -0.9666 -6.2375 2.8411 21 8 -1.9049 -5.5050 3.0805 22 6 -0.8000 -7.6350 3.3039 23 6 -1.5978 -8.4628 4.0853 24 6 -1.1847 -9.7547 4.3659 25 6 0.0174 -10.2237 3.8727 26 6 0.8221 -9.4087 3.0920 27 6 0.4228 -8.1116 2.8016 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2756 -1.7048 -1.2953 30 1 1.0039 -2.6124 -2.1365 31 1 3.5690 -5.7951 0.1043 32 1 2.9086 -7.8491 1.2867 33 1 -0.0355 -3.8779 1.3721 34 1 -2.5379 -8.0992 4.4730 35 1 -1.8044 -10.3976 4.9734 36 1 0.3321 -11.2322 4.0966 37 1 1.7603 -9.7830 2.7099 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227424782.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:08 Heat of formation + Delta-G solvation = -19.776232 kcal Electronic energy + Delta-G solvation = -24407.831820 eV Core-core repulsion = 20720.464190 eV Total energy + Delta-G solvation = -3687.367630 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.94746 -39.16645 -38.03507 -36.95613 -34.95179 -33.73636 -32.93615 -31.29979 -30.54186 -29.69141 -27.96082 -25.53307 -25.40072 -23.56767 -22.08581 -21.54130 -20.32772 -20.12292 -17.60834 -17.13666 -16.80456 -16.16588 -15.84120 -15.03336 -14.93790 -14.81940 -14.47687 -14.31265 -14.15311 -13.98626 -13.74467 -13.25915 -12.98569 -12.75605 -12.48725 -12.24403 -12.07828 -11.80896 -11.62813 -11.24812 -11.19506 -11.08724 -11.06981 -10.82803 -10.35862 -9.90733 -9.67430 -9.56625 -9.35637 -9.15990 -9.00794 -8.74275 -8.70189 -7.37490 -6.49007 -4.58004 0.13206 0.96197 1.33736 2.00024 2.74552 3.09429 3.17790 3.21524 3.32653 3.76681 3.80423 3.93558 4.11999 4.26106 4.39744 4.69189 4.73906 4.87065 4.95359 5.05541 5.15279 5.24727 5.42627 5.56943 5.64786 5.77267 5.80060 6.04470 6.07032 6.10844 6.16710 6.20666 6.23652 6.40449 6.50972 6.66487 6.70316 6.79762 6.94418 7.07307 7.47025 7.56946 7.66886 8.14719 8.56786 9.10142 10.58062 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020217 B = 0.003373 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.624633 B = 8299.903698 C = 8566.499617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.918 3.082 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.525 4.525 8 H 0.078 0.922 9 C 0.202 3.798 10 H 0.053 0.947 11 C -0.038 4.038 12 Cl -0.239 7.239 13 O -0.302 6.302 14 C 0.163 3.837 15 C -0.145 4.145 16 C -0.057 4.057 17 C -0.098 4.098 18 C -0.134 4.134 19 C -0.116 4.116 20 C 0.448 3.552 21 O -0.420 6.420 22 C -0.181 4.181 23 C -0.046 4.046 24 C -0.140 4.140 25 C -0.086 4.086 26 C -0.117 4.117 27 C 0.007 3.993 28 H 0.274 0.726 29 H 0.136 0.864 30 H 0.077 0.923 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.150 0.850 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.552 -16.459 4.649 17.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.744 3.256 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.563 4.563 8 H 0.096 0.904 9 C 0.147 3.853 10 H 0.070 0.930 11 C -0.100 4.100 12 Cl -0.213 7.213 13 O -0.214 6.214 14 C 0.115 3.885 15 C -0.164 4.164 16 C -0.075 4.075 17 C -0.099 4.099 18 C -0.135 4.135 19 C -0.134 4.134 20 C 0.325 3.675 21 O -0.294 6.294 22 C -0.181 4.181 23 C -0.064 4.064 24 C -0.158 4.158 25 C -0.104 4.104 26 C -0.135 4.135 27 C 0.007 3.993 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.095 0.905 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.167 0.833 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.983 -15.961 4.663 16.657 hybrid contribution 0.110 0.821 -0.085 0.833 sum 1.093 -15.139 4.578 15.854 Atomic orbital electron populations 1.69794 1.06020 1.28299 1.48140 1.24998 0.95209 0.99931 0.93810 0.86143 0.79657 0.81199 0.78554 1.20105 1.20700 1.19340 1.20980 0.94368 0.87666 1.53242 0.90382 1.20658 0.87482 0.82889 0.94253 0.92951 1.25795 0.95457 0.86916 1.01857 1.98655 1.75788 1.47961 1.98919 1.86181 1.46309 1.21278 1.67682 1.19143 0.91567 0.87976 0.89787 1.20468 1.01023 0.91136 1.03759 1.20419 0.94440 0.97295 0.95365 1.18943 0.96154 0.93095 1.01680 1.20463 0.96833 0.94965 1.01203 1.21322 0.96934 0.98526 0.96633 1.20765 0.84167 0.85778 0.76831 1.90561 1.32965 1.56179 1.49676 1.20903 0.97502 0.96545 1.03199 1.20894 0.98481 0.92702 0.94295 1.21141 0.97326 0.95561 1.01781 1.21265 0.93984 0.99466 0.95694 1.20807 1.00581 0.92344 0.99790 1.19340 0.93217 0.92751 0.93993 0.91629 0.84662 0.90471 0.84563 0.85241 0.83295 0.85167 0.85220 0.85285 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.88 11.29 55.43 0.63 -22.25 16 2 C 0.06 1.61 5.29 -17.82 -0.09 1.52 16 3 Si 0.92 19.60 29.54 -169.99 -5.02 14.58 16 4 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.52 -13.33 8.89 -34.44 -0.31 -13.64 16 8 H 0.08 1.98 7.81 -52.48 -0.41 1.57 16 9 C 0.20 4.79 2.19 -27.88 -0.06 4.73 16 10 H 0.05 1.33 5.39 -51.93 -0.28 1.05 16 11 C -0.04 -0.85 6.17 37.16 0.23 -0.62 16 12 Cl -0.24 -5.00 25.60 -51.86 -1.33 -6.32 16 13 O -0.30 -6.64 9.72 -19.35 -0.19 -6.83 16 14 C 0.16 3.18 5.97 -39.13 -0.23 2.95 16 15 C -0.15 -2.30 9.97 -39.36 -0.39 -2.69 16 16 C -0.06 -0.79 10.08 -39.27 -0.40 -1.19 16 17 C -0.10 -1.53 6.25 -104.55 -0.65 -2.18 16 18 C -0.13 -2.45 6.28 -104.68 -0.66 -3.11 16 19 C -0.12 -2.31 7.08 -39.02 -0.28 -2.59 16 20 C 0.45 8.14 7.77 -31.39 -0.24 7.90 16 21 O -0.42 -8.60 18.04 5.43 0.10 -8.50 16 22 C -0.18 -2.69 6.28 -104.68 -0.66 -3.35 16 23 C -0.05 -0.54 10.10 -39.20 -0.40 -0.94 16 24 C -0.14 -1.30 10.04 -39.52 -0.40 -1.70 16 25 C -0.09 -0.76 10.03 -39.48 -0.40 -1.15 16 26 C -0.12 -1.23 10.08 -39.24 -0.40 -1.63 16 27 C 0.01 0.10 6.26 -104.56 -0.65 -0.55 16 28 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.14 3.27 5.95 -51.93 -0.31 2.96 16 30 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 31 H 0.14 1.87 8.06 -52.49 -0.42 1.44 16 32 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.15 3.30 5.11 -52.48 -0.27 3.03 16 34 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 333.31 15.07 5.02 5.02 Total: -1.00 -27.87 333.31 -10.13 -38.00 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -3.36 Total: 4.57 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -5.98 Total: -18.26 kcal Atomic # 7 Polarization: -22.88 SS G_CDS: 0.63 Total: -22.25 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.09 Total: -15.33 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 17 Polarization: -5.00 SS G_CDS: -1.33 Total: -6.32 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.87 -10.13 -38.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227424782.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.225 kcal (2) G-P(sol) polarization free energy of solvation -27.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds