Wall clock time and date at job start Tue Mar 31 2020 15:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00291 * 2 1 4 4 H 1.48496 * 109.47239 * 269.99903 * 3 2 1 5 5 H 1.48500 * 109.46978 * 29.99660 * 3 2 1 6 6 H 1.48498 * 109.47364 * 149.99585 * 3 2 1 7 7 C 1.37878 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99836 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00361 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46641 * 300.00151 * 9 7 2 11 11 C 1.53003 * 109.47006 * 59.99812 * 9 7 2 12 12 Cl 1.80296 * 109.47068 * 185.00220 * 11 9 7 13 13 O 1.42893 * 109.47381 * 179.97438 * 9 7 2 14 14 C 1.35875 * 117.00027 * 146.98477 * 13 9 7 15 15 C 1.38621 * 119.94235 * 176.78929 * 14 13 9 16 16 C 1.38447 * 120.37662 * 180.23314 * 15 14 13 17 17 C 1.38875 * 120.12082 * 359.49053 * 16 15 14 18 18 C 1.40467 * 119.59780 * 0.24904 * 17 16 15 19 19 C 1.38914 * 119.95450 * 0.02562 * 18 17 16 20 20 C 1.48264 * 107.82883 * 179.97438 * 18 17 16 21 21 O 1.21422 * 126.46296 * 180.02562 * 20 18 17 22 22 C 1.48155 * 107.07373 * 0.02562 * 20 18 17 23 23 C 1.39005 * 132.28254 * 180.02562 * 22 20 18 24 24 C 1.38503 * 119.87606 * 179.97438 * 23 22 20 25 25 C 1.38137 * 120.26173 * 0.02562 * 24 23 22 26 26 C 1.38612 * 120.43957 * 359.95854 * 25 24 23 27 27 C 1.38790 * 120.02310 * 0.04532 * 26 25 24 28 28 H 0.96998 * 119.99878 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46892 * 305.00097 * 11 9 7 30 30 H 1.08999 * 109.46813 * 64.99843 * 11 9 7 31 31 H 1.07996 * 119.80978 * 359.97438 * 15 14 13 32 32 H 1.07999 * 119.93650 * 179.76206 * 16 15 14 33 33 H 1.08005 * 120.08218 * 179.97438 * 19 18 17 34 34 H 1.07990 * 120.06228 * 359.97025 * 23 22 20 35 35 H 1.07998 * 119.87221 * 179.97438 * 24 23 22 36 36 H 1.07996 * 119.78399 * 179.97438 * 25 24 23 37 37 H 1.07996 * 119.99202 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3718 -2.5805 -1.2490 12 17 -0.6387 -4.0719 -1.1769 13 8 2.1796 -3.5853 0.0005 14 6 1.8088 -4.7139 0.6602 15 6 2.6335 -5.8279 0.6430 16 6 2.2624 -6.9841 1.3080 17 6 1.0633 -7.0316 2.0070 18 6 0.2286 -5.9021 2.0303 19 6 0.6050 -4.7475 1.3559 20 6 -0.9666 -6.2375 2.8411 21 8 -1.9049 -5.5050 3.0805 22 6 -0.8000 -7.6350 3.3039 23 6 -1.5978 -8.4628 4.0853 24 6 -1.1847 -9.7547 4.3659 25 6 0.0174 -10.2237 3.8727 26 6 0.8221 -9.4087 3.0920 27 6 0.4228 -8.1116 2.8016 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2756 -1.7048 -1.2953 30 1 1.0039 -2.6124 -2.1365 31 1 3.5690 -5.7951 0.1043 32 1 2.9086 -7.8491 1.2867 33 1 -0.0355 -3.8779 1.3721 34 1 -2.5379 -8.0992 4.4730 35 1 -1.8044 -10.3976 4.9734 36 1 0.3321 -11.2322 4.0966 37 1 1.7603 -9.7830 2.7099 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227424782.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:08 Heat of formation + Delta-G solvation = -33.285093 kcal Electronic energy + Delta-G solvation = -24408.417608 eV Core-core repulsion = 20720.464190 eV Total energy + Delta-G solvation = -3687.953418 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.15258 -40.60113 -39.25624 -38.31418 -36.69517 -35.49730 -34.22487 -32.35075 -31.76519 -31.37495 -29.17371 -27.33931 -26.72946 -24.83408 -23.35004 -22.79804 -21.60601 -21.42181 -19.12541 -18.75514 -18.03605 -17.43718 -17.25209 -16.55203 -16.44678 -16.09902 -15.90668 -15.63017 -15.30184 -15.26433 -14.90494 -14.70231 -14.48866 -14.01650 -13.84486 -13.71429 -13.46771 -13.24177 -13.02680 -12.79321 -12.65874 -12.57980 -12.48521 -12.11178 -12.02317 -11.60058 -11.29865 -11.16992 -10.92342 -10.63168 -10.19101 -10.11442 -9.98224 -8.70604 -8.41086 -6.58618 -1.07388 -0.03987 0.20302 0.87350 1.37503 1.41204 1.51791 1.52482 1.55308 2.21735 2.55138 2.68174 2.71792 2.91738 2.94093 3.29432 3.67951 3.72268 3.93542 4.01550 4.16645 4.23109 4.27770 4.31908 4.37748 4.50773 4.61308 4.68480 4.75152 4.82323 4.92715 5.06739 5.12385 5.15198 5.31002 5.38183 5.44119 5.50602 5.57978 5.69538 5.77466 5.91183 6.23739 6.40139 6.69754 7.14170 8.65573 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020217 B = 0.003373 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.624633 B = 8299.903698 C = 8566.499617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.023 3.977 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.209 3.791 10 H 0.024 0.976 11 C -0.027 4.027 12 Cl -0.226 7.226 13 O -0.316 6.316 14 C 0.124 3.876 15 C -0.129 4.129 16 C -0.046 4.046 17 C -0.079 4.079 18 C -0.169 4.169 19 C -0.133 4.133 20 C 0.435 3.565 21 O -0.470 6.470 22 C -0.211 4.211 23 C -0.055 4.055 24 C -0.127 4.127 25 C -0.070 4.070 26 C -0.104 4.104 27 C -0.015 4.015 28 H 0.276 0.724 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.164 0.836 32 H 0.185 0.815 33 H 0.111 0.889 34 H 0.132 0.868 35 H 0.167 0.833 36 H 0.176 0.824 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.652 -20.829 5.416 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.092 0.908 9 C 0.154 3.846 10 H 0.041 0.959 11 C -0.090 4.090 12 Cl -0.201 7.201 13 O -0.229 6.229 14 C 0.078 3.922 15 C -0.148 4.148 16 C -0.063 4.063 17 C -0.079 4.079 18 C -0.170 4.170 19 C -0.152 4.152 20 C 0.316 3.684 21 O -0.347 6.347 22 C -0.212 4.212 23 C -0.074 4.074 24 C -0.144 4.144 25 C -0.088 4.088 26 C -0.121 4.121 27 C -0.015 4.015 28 H 0.085 0.915 29 H 0.134 0.866 30 H 0.102 0.898 31 H 0.181 0.819 32 H 0.202 0.798 33 H 0.129 0.871 34 H 0.150 0.850 35 H 0.184 0.816 36 H 0.193 0.807 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.094 -20.369 5.429 21.306 hybrid contribution -0.598 1.848 -0.177 1.950 sum 2.496 -18.521 5.252 19.413 Atomic orbital electron populations 1.69911 1.07345 1.29106 1.48547 1.25825 0.95930 1.03001 0.93074 0.85168 0.78344 0.77021 0.78925 1.19033 1.20460 1.18992 1.21248 0.94360 0.88942 1.53951 0.90832 1.20314 0.87444 0.83407 0.93438 0.95873 1.25471 0.95132 0.86782 1.01603 1.98647 1.75418 1.47028 1.98959 1.86095 1.45944 1.21831 1.69061 1.19464 0.92716 0.88484 0.91548 1.20913 1.00945 0.90151 1.02761 1.20951 0.94070 0.98027 0.93242 1.19325 0.95757 0.92481 1.00351 1.20723 0.98271 0.95793 1.02197 1.21052 0.97329 0.98160 0.98690 1.21445 0.83390 0.87456 0.76095 1.90510 1.34540 1.57878 1.51813 1.20797 0.99581 0.94866 1.05942 1.21165 0.98458 0.93840 0.93894 1.21624 0.97889 0.94195 1.00697 1.21858 0.92711 1.00982 0.93242 1.21282 1.01846 0.90405 0.98601 1.19357 0.92878 0.94068 0.95234 0.91475 0.86601 0.89779 0.81869 0.79763 0.87121 0.84994 0.81570 0.80680 0.81748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.52 11.29 21.45 0.24 -49.28 16 2 C 0.02 1.19 5.29 84.66 0.45 1.64 16 3 Si 0.98 41.07 29.54 68.60 2.03 43.09 16 4 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 7 C -0.55 -29.25 8.89 25.60 0.23 -29.03 16 8 H 0.07 3.88 7.81 -2.91 -0.02 3.86 16 9 C 0.21 10.67 2.19 29.85 0.07 10.74 16 10 H 0.02 1.33 5.39 -2.39 -0.01 1.32 16 11 C -0.03 -1.29 6.17 71.98 0.44 -0.85 16 12 Cl -0.23 -10.06 25.60 -2.72 -0.07 -10.13 16 13 O -0.32 -14.66 9.72 -92.14 -0.90 -15.55 16 14 C 0.12 5.06 5.97 22.56 0.13 5.19 16 15 C -0.13 -3.92 9.97 22.41 0.22 -3.70 16 16 C -0.05 -1.12 10.08 22.47 0.23 -0.89 16 17 C -0.08 -2.36 6.25 -19.82 -0.12 -2.48 16 18 C -0.17 -6.58 6.28 -19.91 -0.12 -6.71 16 19 C -0.13 -5.81 7.08 22.63 0.16 -5.65 16 20 C 0.44 17.12 7.77 27.58 0.21 17.34 16 21 O -0.47 -21.41 18.04 -3.47 -0.06 -21.47 16 22 C -0.21 -6.27 6.28 -19.90 -0.13 -6.40 16 23 C -0.06 -1.24 10.10 22.52 0.23 -1.01 16 24 C -0.13 -1.73 10.04 22.31 0.22 -1.51 16 25 C -0.07 -0.78 10.03 22.34 0.22 -0.55 16 26 C -0.10 -1.59 10.08 22.49 0.23 -1.36 16 27 C -0.02 -0.38 6.26 -19.82 -0.12 -0.50 16 28 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 29 H 0.12 6.00 5.95 -2.39 -0.01 5.99 16 30 H 0.08 3.81 8.14 -2.39 -0.02 3.79 16 31 H 0.16 4.01 8.06 -2.91 -0.02 3.99 16 32 H 0.19 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.11 5.59 5.11 -2.91 -0.01 5.57 16 34 H 0.13 2.77 8.06 -2.92 -0.02 2.75 16 35 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 36 H 0.18 0.48 8.06 -2.91 -0.02 0.45 16 37 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -68.83 333.31 4.91 -63.92 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 1.13 Total: 15.17 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: 2.55 Total: -25.74 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.24 Total: -49.28 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -0.96 Total: -37.02 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 17 Polarization: -10.06 SS G_CDS: -0.07 Total: -10.13 kcal Total: -68.83 4.91 -63.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227424782.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.631 kcal (2) G-P(sol) polarization free energy of solvation -68.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds