Wall clock time and date at job start Tue Mar 31 2020 15:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00156 * 2 1 4 4 H 1.48503 * 109.47130 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46970 * 299.99446 * 3 2 1 6 6 H 1.48499 * 109.47302 * 59.99573 * 3 2 1 7 7 C 1.37876 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00237 * 188.46157 * 7 2 1 9 9 C 1.50705 * 119.99887 * 8.46395 * 7 2 1 10 10 H 1.09002 * 109.47140 * 185.45848 * 9 7 2 11 11 O 1.42906 * 109.47168 * 305.45602 * 9 7 2 12 12 C 1.35441 * 117.00059 * 270.00157 * 11 9 7 13 13 N 1.32242 * 120.45979 * 0.02562 * 12 11 9 14 14 C 1.32583 * 121.16292 * 179.97438 * 13 12 11 15 15 O 1.35501 * 118.99177 * 180.02562 * 14 13 12 16 16 N 1.31788 * 122.00950 * 0.02877 * 14 13 12 17 17 C 1.33874 * 120.94513 * 359.94752 * 16 14 13 18 18 S 1.75756 * 131.24481 * 180.02562 * 17 16 14 19 19 C 1.75340 * 92.19972 * 180.02562 * 18 17 16 20 20 C 1.31805 * 111.42118 * 359.75510 * 19 18 17 21 21 C 1.39798 * 119.14974 * 0.04827 * 17 16 14 22 22 C 1.50694 * 109.47073 * 65.45766 * 9 7 2 23 23 C 1.38230 * 120.00225 * 269.27054 * 22 9 7 24 24 C 1.38233 * 120.00350 * 179.81003 * 23 22 9 25 25 C 1.38237 * 119.99725 * 0.39863 * 24 23 22 26 26 C 1.38234 * 119.99929 * 359.85983 * 25 24 23 27 27 C 1.38230 * 120.00108 * 359.94839 * 26 25 24 28 28 H 0.97002 * 119.99999 * 0.02562 * 1 2 3 29 29 H 0.96691 * 114.00257 * 90.00415 * 15 14 13 30 30 H 1.08000 * 124.29494 * 179.97438 * 19 18 17 31 31 H 1.07999 * 122.59174 * 180.25749 * 20 19 18 32 32 H 1.08002 * 119.99878 * 359.97438 * 23 22 9 33 33 H 1.08004 * 120.00569 * 180.23192 * 24 23 22 34 34 H 1.08007 * 119.99927 * 179.83064 * 25 24 23 35 35 H 1.08008 * 119.99583 * 179.97438 * 26 25 24 36 36 H 1.08005 * 119.99939 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0757 -1.1992 0.1382 9 6 1.2632 -2.4921 -0.1910 10 1 1.9531 -3.3266 -0.0650 11 8 0.2158 -2.5898 0.7763 12 6 0.5226 -3.1772 1.9576 13 7 1.7437 -3.6319 2.1830 14 6 2.0594 -4.2088 3.3343 15 8 3.3243 -4.6585 3.5185 16 7 1.1805 -4.3582 4.3049 17 6 -0.0793 -3.9275 4.1651 18 16 -1.4515 -3.9837 5.2618 19 6 -2.4978 -3.1878 4.1015 20 6 -1.8530 -2.9039 2.9875 21 6 -0.4599 -3.3125 2.9687 22 6 0.6726 -2.5336 -1.5767 23 6 -0.6053 -2.0553 -1.7981 24 6 -1.1456 -2.0897 -3.0699 25 6 -0.4110 -2.6100 -4.1191 26 6 0.8649 -3.0932 -3.8968 27 6 1.4066 -3.0551 -2.6256 28 1 -0.4850 0.8401 -0.0004 29 1 3.9227 -4.0032 3.9023 30 1 -3.5376 -2.9560 4.2785 31 1 -2.3253 -2.4081 2.1523 32 1 -1.1807 -1.6523 -0.9777 33 1 -2.1427 -1.7126 -3.2436 34 1 -0.8342 -2.6394 -5.1124 35 1 1.4386 -3.5000 -4.7165 36 1 2.4034 -3.4330 -2.4519 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227843751.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:08 Heat of formation + Delta-G solvation = 30.490366 kcal Electronic energy + Delta-G solvation = -25107.730121 eV Core-core repulsion = 21456.878672 eV Total energy + Delta-G solvation = -3650.851450 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.75012 -38.69868 -37.68488 -36.94879 -35.04894 -33.35259 -32.28400 -30.83513 -29.95587 -28.82999 -27.07884 -24.70248 -23.64427 -22.98735 -21.64355 -20.97748 -20.38581 -19.18693 -18.26157 -17.60101 -16.52760 -15.82871 -15.78444 -15.68255 -15.00374 -14.83591 -14.30764 -14.16940 -13.78536 -13.68715 -13.34399 -13.13040 -12.67527 -12.52290 -12.12720 -11.98552 -11.78791 -11.64277 -11.47200 -11.12501 -10.91703 -10.81282 -10.71131 -10.57598 -10.23408 -10.04921 -9.63014 -9.23398 -8.85926 -8.75780 -8.38651 -8.03933 -7.76764 -7.66204 -6.31181 -4.47596 0.75658 1.32732 1.53235 2.06940 2.22656 2.33351 2.44530 3.12577 3.22207 3.25815 3.43444 3.81420 4.11630 4.19477 4.67783 4.80271 4.91555 5.00643 5.18562 5.42601 5.63268 5.73208 5.76433 5.82071 6.08704 6.17900 6.25235 6.41662 6.46480 6.51287 6.66008 6.83189 7.00968 7.14494 7.27854 7.41742 7.55945 7.65704 7.71340 7.78132 7.95073 8.14148 8.45186 8.65175 9.24126 10.67343 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011390 B = 0.004701 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.670622 B = 5955.338963 C = 6291.713881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.081 3.919 3 Si 0.893 3.107 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.236 3.764 10 H 0.060 0.940 11 O -0.253 6.253 12 C 0.468 3.532 13 N -0.581 5.581 14 C 0.548 3.452 15 O -0.459 6.459 16 N -0.547 5.547 17 C 0.132 3.868 18 S 0.138 5.862 19 C -0.231 4.231 20 C -0.054 4.054 21 C -0.220 4.220 22 C -0.040 4.040 23 C -0.072 4.072 24 C -0.140 4.140 25 C -0.145 4.145 26 C -0.137 4.137 27 C -0.122 4.122 28 H 0.265 0.735 29 H 0.410 0.590 30 H 0.172 0.828 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.824 -4.612 3.735 7.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.127 4.127 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.571 4.571 8 H 0.090 0.910 9 C 0.183 3.817 10 H 0.078 0.922 11 O -0.150 6.150 12 C 0.274 3.726 13 N -0.327 5.327 14 C 0.240 3.760 15 O -0.262 6.262 16 N -0.283 5.283 17 C -0.117 4.117 18 S 0.393 5.607 19 C -0.365 4.365 20 C -0.084 4.084 21 C -0.236 4.236 22 C -0.041 4.041 23 C -0.090 4.090 24 C -0.158 4.158 25 C -0.163 4.163 26 C -0.155 4.155 27 C -0.140 4.140 28 H 0.075 0.925 29 H 0.269 0.731 30 H 0.189 0.811 31 H 0.173 0.827 32 H 0.165 0.835 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.747 -5.725 4.886 8.408 hybrid contribution 0.488 2.369 -1.539 2.867 sum -3.259 -3.355 3.347 5.752 Atomic orbital electron populations 1.69941 1.05936 1.27020 1.44838 1.25052 0.94913 0.99528 0.93184 0.86500 0.80526 0.83068 0.77869 1.19402 1.20481 1.20793 1.21295 0.94447 0.89594 1.51781 0.91009 1.19173 0.83844 0.97948 0.80751 0.92191 1.86542 1.42164 1.66617 1.19683 1.19818 0.85039 0.81046 0.86746 1.67602 1.20392 1.19823 1.24858 1.19635 0.86370 0.86412 0.83603 1.84657 1.15934 1.40931 1.84679 1.67393 1.01122 1.26692 1.33085 1.23304 0.95732 0.97004 0.95660 1.83914 0.97391 1.62793 1.16561 1.24954 1.03939 1.09638 0.97954 1.20680 0.90896 0.98059 0.98759 1.19829 0.96393 1.11458 0.95870 1.19958 0.93725 0.95077 0.95315 1.21454 0.95506 0.95048 0.96975 1.21120 0.99482 1.01401 0.93796 1.20877 0.95388 1.01934 0.98144 1.20808 0.95922 1.02418 0.96375 1.20773 0.99481 1.01065 0.92684 0.92459 0.73101 0.81063 0.82689 0.83513 0.87541 0.87734 0.87403 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.16 9.55 55.43 0.53 -20.63 16 2 C 0.08 2.05 5.22 -17.82 -0.09 1.96 16 3 Si 0.89 20.04 29.55 -169.99 -5.02 15.01 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.53 -13.61 8.85 -34.44 -0.30 -13.92 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 C 0.24 5.59 2.34 -29.04 -0.07 5.52 16 10 H 0.06 1.43 6.96 -51.93 -0.36 1.07 16 11 O -0.25 -5.90 7.57 -18.01 -0.14 -6.04 16 12 C 0.47 10.27 7.55 -16.08 -0.12 10.15 16 13 N -0.58 -12.51 8.78 -14.38 -0.13 -12.63 16 14 C 0.55 10.61 8.70 -91.48 -0.80 9.81 16 15 O -0.46 -7.36 13.64 -18.20 -0.25 -7.61 16 16 N -0.55 -10.45 10.49 -13.45 -0.14 -10.59 16 17 C 0.13 2.41 7.69 -16.08 -0.12 2.29 16 18 S 0.14 1.91 23.23 -107.50 -2.50 -0.59 16 19 C -0.23 -3.04 11.02 28.84 0.32 -2.72 16 20 C -0.05 -0.88 10.33 -38.72 -0.40 -1.28 16 21 C -0.22 -4.28 6.08 -105.26 -0.64 -4.92 16 22 C -0.04 -0.90 4.82 -104.63 -0.50 -1.40 16 23 C -0.07 -1.56 8.07 -39.59 -0.32 -1.87 16 24 C -0.14 -2.65 10.05 -39.58 -0.40 -3.05 16 25 C -0.15 -2.55 10.05 -39.58 -0.40 -2.95 16 26 C -0.14 -2.45 10.05 -39.59 -0.40 -2.84 16 27 C -0.12 -2.45 9.70 -39.58 -0.38 -2.83 16 28 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 29 H 0.41 4.39 9.06 45.56 0.41 4.80 16 30 H 0.17 1.64 8.06 -52.49 -0.42 1.21 16 31 H 0.16 2.44 8.06 -52.49 -0.42 2.02 16 32 H 0.15 3.40 5.99 -52.49 -0.31 3.08 16 33 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 34 H 0.10 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.11 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 331.17 15.07 4.99 4.99 Total: -1.00 -28.98 331.17 -9.63 -38.61 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -2.35 Total: 7.51 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -4.63 Total: -8.05 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.26 Total: -43.85 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.38 Total: -13.64 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.50 Total: -0.59 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.98 -9.63 -38.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227843751.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.100 kcal (2) G-P(sol) polarization free energy of solvation -28.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds