Wall clock time and date at job start Tue Mar 31 2020 15:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00076 * 2 1 4 4 H 1.48492 * 109.46970 * 84.97886 * 3 2 1 5 5 H 1.48498 * 109.47009 * 204.98113 * 3 2 1 6 6 H 1.48500 * 109.46761 * 324.97891 * 3 2 1 7 7 C 1.37870 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00387 * 5.34481 * 7 2 1 9 9 C 1.50702 * 119.99679 * 185.34671 * 7 2 1 10 10 H 1.08995 * 109.47313 * 5.60171 * 9 7 2 11 11 O 1.42901 * 109.47155 * 125.60173 * 9 7 2 12 12 C 1.35972 * 116.99962 * 274.94333 * 11 9 7 13 13 C 1.38847 * 119.87842 * 4.85184 * 12 11 9 14 14 C 1.37860 * 119.72944 * 179.75066 * 13 12 11 15 15 C 1.39221 * 120.24399 * 0.48518 * 14 13 12 16 16 S 1.76157 * 130.85053 * 179.76221 * 15 14 13 17 17 C 1.70591 * 91.06368 * 180.02562 * 16 15 14 18 18 O 1.21634 * 124.55502 * 179.97438 * 17 16 15 19 19 O 1.32083 * 110.88992 * 0.02562 * 17 16 15 20 20 C 1.34492 * 116.88820 * 359.97438 * 19 17 16 21 21 C 1.38113 * 119.87731 * 185.13089 * 12 11 9 22 22 C 1.50695 * 109.47240 * 245.59920 * 9 7 2 23 23 C 1.38239 * 120.00412 * 274.80520 * 22 9 7 24 24 C 1.38230 * 120.00064 * 179.81256 * 23 22 9 25 25 C 1.38235 * 120.00279 * 0.39092 * 24 23 22 26 26 C 1.38239 * 119.99752 * 359.86096 * 25 24 23 27 27 C 1.38234 * 120.00041 * 359.95825 * 26 25 24 28 28 H 0.97001 * 120.00148 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.14096 * 0.02562 * 13 12 11 30 30 H 1.07997 * 119.87833 * 180.27415 * 14 13 12 31 31 H 1.08002 * 119.75968 * 359.97438 * 21 12 11 32 32 H 1.08006 * 119.99426 * 359.97438 * 23 22 9 33 33 H 1.08007 * 119.99696 * 180.22959 * 24 23 22 34 34 H 1.07994 * 120.00128 * 179.83745 * 25 24 23 35 35 H 1.07999 * 119.99595 * 179.97438 * 26 25 24 36 36 H 1.07998 * 119.99682 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3906 2.1076 1.3946 5 1 3.5957 1.4118 -0.5913 6 1 1.5037 2.6197 -0.8035 7 6 2.0045 -1.1940 -0.0005 8 1 1.4680 -2.1272 -0.0881 9 6 3.5066 -1.1969 0.1211 10 1 3.8587 -0.1808 0.2984 11 8 3.8944 -2.0328 1.2133 12 6 3.9031 -1.4680 2.4501 13 6 3.4488 -0.1669 2.6196 14 6 3.4541 0.4009 3.8758 15 6 3.9220 -0.3216 4.9700 16 16 4.0592 0.1208 6.6695 17 6 4.7052 -1.4117 7.0492 18 8 5.0379 -1.7629 8.1652 19 8 4.7967 -2.1652 5.9682 20 6 4.3837 -1.6201 4.8101 21 6 4.3690 -2.1886 3.5323 22 6 4.1128 -1.7233 -1.1542 23 6 4.2614 -3.0853 -1.3382 24 6 4.8139 -3.5683 -2.5096 25 6 5.2253 -2.6890 -3.4937 26 6 5.0815 -1.3268 -3.3076 27 6 4.5255 -0.8440 -2.1377 28 1 -0.4850 0.8400 0.0004 29 1 3.0886 0.3965 1.7714 30 1 3.0972 1.4112 4.0110 31 1 4.7244 -3.1987 3.3909 32 1 3.9433 -3.7722 -0.5677 33 1 4.9266 -4.6326 -2.6549 34 1 5.6594 -3.0663 -4.4078 35 1 5.4033 -0.6398 -4.0763 36 1 4.4128 0.2203 -1.9925 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228427415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:13 Heat of formation + Delta-G solvation = -24.513024 kcal Electronic energy + Delta-G solvation = -24523.809469 eV Core-core repulsion = 20838.280143 eV Total energy + Delta-G solvation = -3685.529327 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.060 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.15324 -39.83766 -38.71201 -38.07241 -36.32935 -33.40939 -31.70030 -30.69251 -30.44221 -29.62732 -27.66330 -25.89859 -23.67307 -23.43671 -22.26345 -21.72780 -20.72337 -19.50883 -17.99623 -17.57468 -17.37750 -17.13170 -16.96867 -16.22168 -15.31406 -15.20565 -14.96809 -14.50093 -14.16693 -13.99857 -13.82805 -13.44615 -13.30938 -13.09923 -12.99685 -12.84523 -12.45360 -12.21434 -11.93865 -11.67684 -11.39957 -11.06619 -10.81110 -10.62651 -10.47777 -10.37272 -10.07297 -9.82902 -9.29085 -9.11359 -8.75753 -8.45270 -8.15236 -7.66148 -6.60476 -4.65704 0.72789 0.89462 1.20162 1.40247 1.71073 1.83920 1.88475 2.15382 2.79630 2.87705 2.97544 3.61965 3.77965 3.85208 4.31449 4.42053 4.75931 5.06340 5.13543 5.33166 5.34625 5.36155 5.47825 5.62797 5.74216 5.76768 5.85396 6.01524 6.07490 6.11835 6.29440 6.43754 6.51153 6.54241 6.60029 6.89914 6.91768 6.96393 6.97095 7.17012 7.47802 7.77987 8.02084 8.54348 8.95705 10.50725 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.003969 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.388333 B = 7052.506550 C = 8283.240350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.087 3.913 3 Si 0.844 3.156 4 H -0.261 1.261 5 H -0.252 1.252 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.091 0.909 9 C 0.202 3.798 10 H 0.053 0.947 11 O -0.306 6.306 12 C 0.222 3.778 13 C -0.195 4.195 14 C -0.005 4.005 15 C -0.250 4.250 16 S 0.049 5.951 17 C 0.448 3.552 18 O -0.426 6.426 19 O -0.253 6.253 20 C 0.132 3.868 21 C -0.155 4.155 22 C -0.037 4.037 23 C -0.103 4.103 24 C -0.123 4.123 25 C -0.141 4.141 26 C -0.121 4.121 27 C -0.124 4.124 28 H 0.274 0.726 29 H 0.148 0.852 30 H 0.137 0.863 31 H 0.149 0.851 32 H 0.124 0.876 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.603 1.135 1.721 8.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.120 4.120 3 Si 0.670 3.330 4 H -0.187 1.187 5 H -0.176 1.176 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.109 0.891 9 C 0.148 3.852 10 H 0.070 0.930 11 O -0.219 6.219 12 C 0.171 3.829 13 C -0.215 4.215 14 C -0.027 4.027 15 C -0.364 4.364 16 S 0.288 5.712 17 C 0.182 3.818 18 O -0.316 6.316 19 O -0.165 6.165 20 C 0.082 3.918 21 C -0.175 4.175 22 C -0.037 4.037 23 C -0.121 4.121 24 C -0.142 4.142 25 C -0.159 4.159 26 C -0.139 4.139 27 C -0.142 4.142 28 H 0.085 0.915 29 H 0.165 0.835 30 H 0.155 0.845 31 H 0.167 0.833 32 H 0.142 0.858 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.438 1.728 2.973 9.112 hybrid contribution 0.235 0.095 -0.839 0.876 sum 8.672 1.824 2.134 9.115 Atomic orbital electron populations 1.69840 1.06127 1.27914 1.45623 1.25068 0.94854 0.98630 0.93437 0.87521 0.81312 0.84661 0.79480 1.18654 1.17629 1.19905 1.21181 0.87636 0.95998 1.52050 0.89122 1.19685 0.95763 0.89725 0.79987 0.92978 1.86148 1.80638 1.42534 1.12540 1.18326 0.88564 0.89960 0.86012 1.21703 1.05045 0.96316 0.98454 1.20161 0.94177 0.98996 0.89323 1.22289 1.17872 0.98276 0.97940 1.85125 1.70041 1.15356 1.00726 1.23578 0.82345 0.89964 0.85885 1.91018 1.49869 1.73927 1.16788 1.83117 1.71848 1.46229 1.15296 1.18359 0.98147 0.90347 0.84908 1.19129 1.10118 1.02386 0.85899 1.19873 0.94091 0.93772 0.96007 1.20967 0.98695 0.95216 0.97247 1.21074 0.99784 0.99111 0.94180 1.20959 1.02334 0.93532 0.99078 1.20956 1.00382 0.95438 0.97148 1.20942 0.99558 0.99549 0.94162 0.91531 0.83468 0.84509 0.83338 0.85823 0.86722 0.86923 0.86695 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.99 13.96 55.43 0.77 -22.22 16 2 C 0.09 2.16 5.29 -17.82 -0.09 2.07 16 3 Si 0.84 17.44 24.63 -169.99 -4.19 13.25 16 4 H -0.26 -5.00 6.67 56.52 0.38 -4.62 16 5 H -0.25 -4.79 4.92 56.52 0.28 -4.51 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.53 -13.08 8.68 -34.44 -0.30 -13.38 16 8 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 9 C 0.20 4.23 1.91 -29.04 -0.06 4.17 16 10 H 0.05 1.07 3.39 -51.93 -0.18 0.90 16 11 O -0.31 -6.09 8.92 -19.65 -0.18 -6.27 16 12 C 0.22 4.06 6.58 -39.40 -0.26 3.80 16 13 C -0.20 -3.56 8.71 -39.49 -0.34 -3.91 16 14 C 0.00 -0.08 10.06 -39.35 -0.40 -0.47 16 15 C -0.25 -3.82 6.46 -39.03 -0.25 -4.08 16 16 S 0.05 0.66 23.15 -107.50 -2.49 -1.83 16 17 C 0.45 6.92 8.61 101.05 0.87 7.79 16 18 O -0.43 -7.31 18.05 -19.22 -0.35 -7.66 16 19 O -0.25 -4.02 10.06 -13.88 -0.14 -4.16 16 20 C 0.13 2.09 7.10 -38.79 -0.28 1.81 16 21 C -0.15 -2.49 9.99 -39.02 -0.39 -2.88 16 22 C -0.04 -0.72 4.99 -104.62 -0.52 -1.24 16 23 C -0.10 -1.84 9.35 -39.58 -0.37 -2.21 16 24 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 25 C -0.14 -2.03 10.05 -39.58 -0.40 -2.43 16 26 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 27 C -0.12 -2.22 9.68 -39.58 -0.38 -2.60 16 28 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.15 2.90 1.37 -52.48 -0.07 2.83 16 30 H 0.14 1.85 8.06 -52.49 -0.42 1.42 16 31 H 0.15 2.10 8.06 -52.49 -0.42 1.68 16 32 H 0.12 2.17 7.62 -52.48 -0.40 1.77 16 33 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.12 2.04 6.60 -52.49 -0.35 1.70 16 LS Contribution 320.66 15.07 4.83 4.83 Total: -1.00 -26.35 320.66 -8.51 -34.86 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -2.81 Total: 7.28 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -3.96 Total: -18.09 kcal Atomic # 7 Polarization: -22.99 SS G_CDS: 0.77 Total: -22.22 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.66 Total: -18.09 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -4.19 Total: 13.25 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.49 Total: -1.83 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.35 -8.51 -34.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228427415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.344 kcal (2) G-P(sol) polarization free energy of solvation -26.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds