Wall clock time and date at job start Tue Mar 31 2020 15:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00076 * 2 1 4 4 H 1.48492 * 109.46970 * 84.97886 * 3 2 1 5 5 H 1.48498 * 109.47009 * 204.98113 * 3 2 1 6 6 H 1.48500 * 109.46761 * 324.97891 * 3 2 1 7 7 C 1.37870 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00387 * 5.34481 * 7 2 1 9 9 C 1.50702 * 119.99679 * 185.34671 * 7 2 1 10 10 H 1.08995 * 109.47313 * 5.60171 * 9 7 2 11 11 O 1.42901 * 109.47155 * 125.60173 * 9 7 2 12 12 C 1.35972 * 116.99962 * 274.94333 * 11 9 7 13 13 C 1.38847 * 119.87842 * 4.85184 * 12 11 9 14 14 C 1.37860 * 119.72944 * 179.75066 * 13 12 11 15 15 C 1.39221 * 120.24399 * 0.48518 * 14 13 12 16 16 S 1.76157 * 130.85053 * 179.76221 * 15 14 13 17 17 C 1.70591 * 91.06368 * 180.02562 * 16 15 14 18 18 O 1.21634 * 124.55502 * 179.97438 * 17 16 15 19 19 O 1.32083 * 110.88992 * 0.02562 * 17 16 15 20 20 C 1.34492 * 116.88820 * 359.97438 * 19 17 16 21 21 C 1.38113 * 119.87731 * 185.13089 * 12 11 9 22 22 C 1.50695 * 109.47240 * 245.59920 * 9 7 2 23 23 C 1.38239 * 120.00412 * 274.80520 * 22 9 7 24 24 C 1.38230 * 120.00064 * 179.81256 * 23 22 9 25 25 C 1.38235 * 120.00279 * 0.39092 * 24 23 22 26 26 C 1.38239 * 119.99752 * 359.86096 * 25 24 23 27 27 C 1.38234 * 120.00041 * 359.95825 * 26 25 24 28 28 H 0.97001 * 120.00148 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.14096 * 0.02562 * 13 12 11 30 30 H 1.07997 * 119.87833 * 180.27415 * 14 13 12 31 31 H 1.08002 * 119.75968 * 359.97438 * 21 12 11 32 32 H 1.08006 * 119.99426 * 359.97438 * 23 22 9 33 33 H 1.08007 * 119.99696 * 180.22959 * 24 23 22 34 34 H 1.07994 * 120.00128 * 179.83745 * 25 24 23 35 35 H 1.07999 * 119.99595 * 179.97438 * 26 25 24 36 36 H 1.07998 * 119.99682 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3906 2.1076 1.3946 5 1 3.5957 1.4118 -0.5913 6 1 1.5037 2.6197 -0.8035 7 6 2.0045 -1.1940 -0.0005 8 1 1.4680 -2.1272 -0.0881 9 6 3.5066 -1.1969 0.1211 10 1 3.8587 -0.1808 0.2984 11 8 3.8944 -2.0328 1.2133 12 6 3.9031 -1.4680 2.4501 13 6 3.4488 -0.1669 2.6196 14 6 3.4541 0.4009 3.8758 15 6 3.9220 -0.3216 4.9700 16 16 4.0592 0.1208 6.6695 17 6 4.7052 -1.4117 7.0492 18 8 5.0379 -1.7629 8.1652 19 8 4.7967 -2.1652 5.9682 20 6 4.3837 -1.6201 4.8101 21 6 4.3690 -2.1886 3.5323 22 6 4.1128 -1.7233 -1.1542 23 6 4.2614 -3.0853 -1.3382 24 6 4.8139 -3.5683 -2.5096 25 6 5.2253 -2.6890 -3.4937 26 6 5.0815 -1.3268 -3.3076 27 6 4.5255 -0.8440 -2.1377 28 1 -0.4850 0.8400 0.0004 29 1 3.0886 0.3965 1.7714 30 1 3.0972 1.4112 4.0110 31 1 4.7244 -3.1987 3.3909 32 1 3.9433 -3.7722 -0.5677 33 1 4.9266 -4.6326 -2.6549 34 1 5.6594 -3.0663 -4.4078 35 1 5.4033 -0.6398 -4.0763 36 1 4.4128 0.2203 -1.9925 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228427415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:12 Heat of formation + Delta-G solvation = -37.084683 kcal Electronic energy + Delta-G solvation = -24524.354617 eV Core-core repulsion = 20838.280143 eV Total energy + Delta-G solvation = -3686.074475 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.060 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.41869 -41.25394 -39.99409 -39.36906 -37.69445 -35.16389 -33.20243 -31.99036 -31.70647 -30.96279 -29.26047 -27.18444 -25.18627 -24.82701 -23.56474 -23.02080 -22.06392 -20.84778 -19.66743 -18.90912 -18.63678 -18.55953 -18.34463 -17.50988 -16.75029 -16.60496 -16.33590 -15.84608 -15.53817 -15.30473 -15.17006 -14.93978 -14.69250 -14.64360 -14.31796 -14.18348 -13.82795 -13.56358 -13.27219 -13.09528 -12.74100 -12.43516 -12.21643 -12.01773 -11.83750 -11.73877 -11.70841 -11.39381 -10.88480 -10.62941 -10.05916 -9.71894 -9.49539 -8.96528 -8.48712 -6.60091 -0.46407 -0.39909 -0.11236 0.17657 0.45448 0.54863 0.61092 0.88216 1.17400 1.24118 1.32086 2.12061 2.27787 2.32946 2.92710 3.05548 3.16916 3.74382 3.78950 4.02433 4.03848 4.17863 4.24009 4.32743 4.39962 4.43157 4.53904 4.73029 4.78658 4.84538 4.96131 5.11736 5.18953 5.23469 5.26916 5.35177 5.65418 5.66723 5.70239 5.83034 5.99446 6.22551 6.38010 6.57343 7.07462 8.66968 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.003969 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.388333 B = 7052.506550 C = 8283.240350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.041 3.959 3 Si 0.893 3.107 4 H -0.234 1.234 5 H -0.229 1.229 6 H -0.276 1.276 7 C -0.537 4.537 8 H 0.038 0.962 9 C 0.213 3.787 10 H 0.058 0.942 11 O -0.316 6.316 12 C 0.196 3.804 13 C -0.214 4.214 14 C 0.003 3.997 15 C -0.255 4.255 16 S 0.126 5.874 17 C 0.436 3.564 18 O -0.449 6.449 19 O -0.259 6.259 20 C 0.130 3.870 21 C -0.149 4.149 22 C -0.071 4.071 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.132 4.132 26 C -0.119 4.119 27 C -0.142 4.142 28 H 0.276 0.724 29 H 0.134 0.866 30 H 0.165 0.835 31 H 0.163 0.837 32 H 0.112 0.888 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.822 2.405 1.474 11.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.161 4.161 3 Si 0.715 3.285 4 H -0.158 1.158 5 H -0.152 1.152 6 H -0.202 1.202 7 C -0.574 4.574 8 H 0.056 0.944 9 C 0.159 3.841 10 H 0.075 0.925 11 O -0.229 6.229 12 C 0.147 3.853 13 C -0.235 4.235 14 C -0.019 4.019 15 C -0.368 4.368 16 S 0.366 5.634 17 C 0.172 3.828 18 O -0.341 6.341 19 O -0.171 6.171 20 C 0.080 3.920 21 C -0.169 4.169 22 C -0.071 4.071 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.150 4.150 26 C -0.137 4.137 27 C -0.160 4.160 28 H 0.085 0.915 29 H 0.152 0.848 30 H 0.183 0.817 31 H 0.180 0.820 32 H 0.130 0.870 33 H 0.161 0.839 34 H 0.170 0.830 35 H 0.167 0.833 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.676 2.993 2.738 11.421 hybrid contribution -0.418 -0.432 -0.714 0.933 sum 10.258 2.562 2.024 10.765 Atomic orbital electron populations 1.69993 1.08159 1.28960 1.48216 1.25818 0.95411 1.02290 0.92616 0.86700 0.80936 0.79712 0.81142 1.15824 1.15230 1.20209 1.21189 0.89902 0.94123 1.52211 0.94361 1.19460 0.93326 0.90360 0.80985 0.92455 1.86079 1.81155 1.42497 1.13168 1.18562 0.90171 0.90709 0.85867 1.21705 1.06125 0.96398 0.99244 1.20371 0.93168 1.00043 0.88301 1.22555 1.16675 0.98049 0.99546 1.84938 1.68430 1.12343 0.97729 1.23947 0.82467 0.90905 0.85485 1.91014 1.50905 1.74757 1.17399 1.83097 1.71817 1.46844 1.15385 1.18335 0.98142 0.90702 0.84791 1.19185 1.09288 1.02840 0.85626 1.19947 0.96331 0.94935 0.95912 1.21039 0.99951 0.94656 0.98513 1.21429 0.98477 1.00996 0.93153 1.21449 1.00603 0.93040 0.99879 1.21375 0.98933 0.96672 0.96684 1.21122 1.00461 0.99446 0.95002 0.91483 0.84824 0.81750 0.81957 0.87014 0.83853 0.82960 0.83337 0.86469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.52 13.96 21.45 0.30 -51.22 16 2 C 0.04 2.11 5.29 84.65 0.45 2.56 16 3 Si 0.89 35.84 24.63 68.60 1.69 37.53 16 4 H -0.23 -8.30 6.67 99.48 0.66 -7.64 16 5 H -0.23 -8.24 4.92 99.48 0.49 -7.75 16 6 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.54 -28.02 8.68 25.60 0.22 -27.80 16 8 H 0.04 2.32 8.06 -2.91 -0.02 2.29 16 9 C 0.21 9.22 1.91 29.10 0.06 9.27 16 10 H 0.06 2.38 3.39 -2.39 -0.01 2.37 16 11 O -0.32 -13.11 8.92 -93.23 -0.83 -13.94 16 12 C 0.20 7.29 6.58 22.39 0.15 7.44 16 13 C -0.21 -7.73 8.71 22.33 0.19 -7.53 16 14 C 0.00 0.07 10.06 22.42 0.23 0.30 16 15 C -0.25 -7.21 6.46 22.63 0.15 -7.07 16 16 S 0.13 3.01 23.15 -56.49 -1.31 1.70 16 17 C 0.44 12.69 8.61 113.37 0.98 13.67 16 18 O -0.45 -14.81 18.05 19.25 0.35 -14.47 16 19 O -0.26 -7.90 10.06 38.36 0.39 -7.51 16 20 C 0.13 3.95 7.10 22.78 0.16 4.11 16 21 C -0.15 -4.77 9.99 22.63 0.23 -4.55 16 22 C -0.07 -2.82 4.99 -19.87 -0.10 -2.92 16 23 C -0.12 -4.49 9.35 22.27 0.21 -4.28 16 24 C -0.12 -3.53 10.05 22.27 0.22 -3.30 16 25 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 26 C -0.12 -3.30 10.05 22.27 0.22 -3.07 16 27 C -0.14 -4.97 9.68 22.27 0.22 -4.76 16 28 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.13 5.20 1.37 -2.91 0.00 5.19 16 30 H 0.16 3.86 8.06 -2.91 -0.02 3.84 16 31 H 0.16 4.60 8.06 -2.91 -0.02 4.58 16 32 H 0.11 4.17 7.62 -2.91 -0.02 4.15 16 33 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 34 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.12 3.96 6.60 -2.91 -0.02 3.94 16 Total: -1.00 -61.24 320.66 5.28 -55.96 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.89 Total: 23.01 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 3.80 Total: -31.06 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.30 Total: -51.22 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -0.10 Total: -35.92 kcal Atomic # 14 Polarization: 35.84 SS G_CDS: 1.69 Total: 37.53 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.31 Total: 1.70 kcal Total: -61.24 5.28 -55.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228427415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.873 kcal (2) G-P(sol) polarization free energy of solvation -61.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds