Wall clock time and date at job start Tue Mar 31 2020 15:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00099 * 2 1 4 4 H 1.48502 * 109.47083 * 273.02310 * 3 2 1 5 5 H 1.48502 * 109.47079 * 33.01901 * 3 2 1 6 6 H 1.48492 * 109.47424 * 153.02365 * 3 2 1 7 7 C 1.37877 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99982 * 348.11284 * 7 2 1 9 9 C 1.50704 * 119.99828 * 168.11736 * 7 2 1 10 10 H 1.08996 * 109.47218 * 354.63635 * 9 7 2 11 11 O 1.42903 * 109.46800 * 234.63588 * 9 7 2 12 12 C 1.35963 * 116.99878 * 83.41069 * 11 9 7 13 13 C 1.38857 * 119.88192 * 1.26457 * 12 11 9 14 14 C 1.37851 * 119.72955 * 180.02562 * 13 12 11 15 15 C 1.39215 * 120.25108 * 0.02562 * 14 13 12 16 16 S 1.76148 * 130.85761 * 179.97438 * 15 14 13 17 17 C 1.70585 * 91.06998 * 179.97438 * 16 15 14 18 18 O 1.21639 * 124.55871 * 179.97438 * 17 16 15 19 19 O 1.32084 * 110.88820 * 359.97438 * 17 16 15 20 20 C 1.34491 * 116.88544 * 0.02562 * 19 17 16 21 21 C 1.38125 * 119.87758 * 180.98838 * 12 11 9 22 22 C 1.50702 * 109.47058 * 114.63630 * 9 7 2 23 23 C 1.38230 * 120.00109 * 262.15460 * 22 9 7 24 24 C 1.38229 * 120.00021 * 179.97438 * 23 22 9 25 25 C 1.38237 * 120.00190 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99634 * 359.97438 * 25 24 23 27 27 C 1.38233 * 120.00474 * 0.07415 * 26 25 24 28 28 H 0.97001 * 120.00127 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.13326 * 0.02562 * 13 12 11 30 30 H 1.07994 * 119.87518 * 179.97438 * 14 13 12 31 31 H 1.07997 * 119.75422 * 359.97438 * 21 12 11 32 32 H 1.08006 * 119.99658 * 359.97438 * 23 22 9 33 33 H 1.08009 * 119.99920 * 179.97438 * 24 23 22 34 34 H 1.08003 * 119.99899 * 179.72179 * 25 24 23 35 35 H 1.08003 * 119.99697 * 179.97438 * 26 25 24 36 36 H 1.07989 * 120.00287 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4327 2.0833 -1.3981 5 1 1.4800 2.6334 0.7629 6 1 3.5771 1.4226 0.6351 7 6 2.0045 -1.1941 0.0005 8 1 1.4818 -2.1192 0.1936 9 6 3.4873 -1.2081 -0.2682 10 1 3.8181 -0.2039 -0.5328 11 8 3.7672 -2.1018 -1.3476 12 6 3.6194 -1.6130 -2.6077 13 6 3.2382 -0.2912 -2.7968 14 6 3.0887 0.2009 -4.0757 15 6 3.3178 -0.6219 -5.1751 16 16 3.2117 -0.2934 -6.9024 17 6 3.6704 -1.8952 -7.2678 18 8 3.7902 -2.3388 -8.3940 19 8 3.8781 -2.5892 -6.1633 20 6 3.7000 -1.9437 -4.9969 21 6 3.8544 -2.4315 -3.6952 22 6 4.2174 -1.6684 0.9672 23 6 4.7729 -0.7402 1.8279 24 6 5.4420 -1.1624 2.9613 25 6 5.5553 -2.5127 3.2345 26 6 4.9988 -3.4409 2.3744 27 6 4.3305 -3.0188 1.2403 28 1 -0.4850 0.8400 -0.0004 29 1 3.0596 0.3486 -1.9453 30 1 2.7919 1.2284 -4.2255 31 1 4.1553 -3.4569 -3.5391 32 1 4.6840 0.3149 1.6146 33 1 5.8764 -0.4371 3.6336 34 1 6.0820 -2.8427 4.1177 35 1 5.0877 -4.4959 2.5876 36 1 3.8954 -3.7439 0.5686 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228427417.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:16 Heat of formation + Delta-G solvation = -25.865860 kcal Electronic energy + Delta-G solvation = -24515.310850 eV Core-core repulsion = 20829.722860 eV Total energy + Delta-G solvation = -3685.587990 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.060 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.13173 -39.81512 -38.70383 -38.05858 -36.31114 -33.38973 -31.70343 -30.66764 -30.44422 -29.60639 -27.63559 -25.88140 -23.69330 -23.40765 -22.26046 -21.71959 -20.71599 -19.48907 -17.91899 -17.55563 -17.35697 -17.11961 -16.95205 -16.20455 -15.30476 -15.18450 -14.99382 -14.46880 -14.14754 -13.99317 -13.86212 -13.40236 -13.30278 -13.11431 -12.99035 -12.82087 -12.42094 -12.21644 -11.92724 -11.54445 -11.42186 -11.04733 -10.82622 -10.69795 -10.46553 -10.36903 -10.08975 -9.81354 -9.28845 -9.06610 -8.73520 -8.45201 -8.15447 -7.63443 -6.61022 -4.64369 0.74661 0.91810 1.22873 1.42298 1.73164 1.83523 1.88482 2.17626 2.81304 2.91265 2.99339 3.63577 3.80449 3.87796 4.32579 4.44252 4.75642 5.08235 5.14691 5.33381 5.35173 5.37024 5.48300 5.63816 5.75883 5.77288 5.86085 6.02696 6.07691 6.13232 6.31186 6.44339 6.52196 6.55408 6.61755 6.90911 6.92344 6.96966 6.98528 7.17706 7.47852 7.79479 8.01665 8.54872 8.96877 10.49954 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.015054 B = 0.003936 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.573671 B = 7112.975876 C = 8292.205802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.090 3.910 3 Si 0.843 3.157 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.250 1.250 7 C -0.535 4.535 8 H 0.090 0.910 9 C 0.206 3.794 10 H 0.049 0.951 11 O -0.307 6.307 12 C 0.223 3.777 13 C -0.194 4.194 14 C -0.004 4.004 15 C -0.251 4.251 16 S 0.048 5.952 17 C 0.448 3.552 18 O -0.426 6.426 19 O -0.253 6.253 20 C 0.132 3.868 21 C -0.154 4.154 22 C -0.038 4.038 23 C -0.127 4.127 24 C -0.122 4.122 25 C -0.141 4.141 26 C -0.124 4.124 27 C -0.101 4.101 28 H 0.274 0.726 29 H 0.148 0.852 30 H 0.137 0.863 31 H 0.148 0.852 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.520 1.082 -2.281 8.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.118 4.118 3 Si 0.670 3.330 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.175 1.175 7 C -0.572 4.572 8 H 0.108 0.892 9 C 0.153 3.847 10 H 0.066 0.934 11 O -0.219 6.219 12 C 0.173 3.827 13 C -0.214 4.214 14 C -0.026 4.026 15 C -0.364 4.364 16 S 0.287 5.713 17 C 0.182 3.818 18 O -0.317 6.317 19 O -0.165 6.165 20 C 0.082 3.918 21 C -0.175 4.175 22 C -0.038 4.038 23 C -0.145 4.145 24 C -0.140 4.140 25 C -0.159 4.159 26 C -0.142 4.142 27 C -0.120 4.120 28 H 0.084 0.916 29 H 0.165 0.835 30 H 0.155 0.845 31 H 0.166 0.834 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.202 1.598 -3.551 9.079 hybrid contribution 0.273 0.141 0.902 0.953 sum 8.474 1.740 -2.649 9.048 Atomic orbital electron populations 1.69877 1.06265 1.27996 1.44978 1.25048 0.94756 0.98745 0.93289 0.87539 0.81561 0.84506 0.79439 1.18828 1.19940 1.17480 1.21153 0.89031 0.96412 1.50555 0.89198 1.19539 0.95955 0.88648 0.80552 0.93364 1.86160 1.80775 1.43828 1.11131 1.18301 0.88446 0.90368 0.85581 1.21632 1.05539 0.96360 0.97878 1.20138 0.94502 0.98708 0.89260 1.22279 1.19461 0.97439 0.97224 1.85109 1.76306 1.11329 0.98568 1.23578 0.80870 0.91423 0.85896 1.91018 1.51877 1.72369 1.16389 1.83116 1.75131 1.44681 1.13571 1.18358 1.00081 0.88661 0.84662 1.19118 1.11450 1.01832 0.85110 1.19878 0.93702 0.93632 0.96589 1.21043 0.98554 0.99515 0.95407 1.20957 1.00072 0.95722 0.97227 1.20960 1.01819 0.93363 0.99753 1.21075 0.99005 0.99008 0.95101 1.20964 0.98434 0.95638 0.96916 0.91560 0.83509 0.84550 0.83384 0.86245 0.86729 0.86939 0.86730 0.85846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.85 13.96 55.43 0.77 -22.07 16 2 C 0.09 2.21 5.29 -17.82 -0.09 2.11 16 3 Si 0.84 17.37 24.83 -169.99 -4.22 13.15 16 4 H -0.26 -5.02 6.56 56.52 0.37 -4.65 16 5 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.25 -4.74 4.69 56.52 0.27 -4.47 16 7 C -0.54 -13.11 8.69 -34.44 -0.30 -13.41 16 8 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.21 4.30 1.84 -29.03 -0.05 4.25 16 10 H 0.05 0.98 3.48 -51.93 -0.18 0.80 16 11 O -0.31 -6.10 9.04 -19.62 -0.18 -6.28 16 12 C 0.22 4.10 6.55 -39.39 -0.26 3.85 16 13 C -0.19 -3.52 8.77 -39.49 -0.35 -3.87 16 14 C 0.00 -0.07 10.06 -39.36 -0.40 -0.47 16 15 C -0.25 -3.86 6.46 -39.03 -0.25 -4.11 16 16 S 0.05 0.66 23.15 -107.50 -2.49 -1.83 16 17 C 0.45 6.99 8.61 101.05 0.87 7.86 16 18 O -0.43 -7.39 18.05 -19.22 -0.35 -7.73 16 19 O -0.25 -4.07 10.06 -13.88 -0.14 -4.21 16 20 C 0.13 2.11 7.10 -38.79 -0.28 1.83 16 21 C -0.15 -2.52 9.99 -39.01 -0.39 -2.91 16 22 C -0.04 -0.73 4.97 -104.62 -0.52 -1.25 16 23 C -0.13 -2.26 9.67 -39.59 -0.38 -2.65 16 24 C -0.12 -1.86 10.05 -39.58 -0.40 -2.25 16 25 C -0.14 -2.03 10.05 -39.58 -0.40 -2.43 16 26 C -0.12 -1.89 10.05 -39.58 -0.40 -2.29 16 27 C -0.10 -1.81 9.36 -39.58 -0.37 -2.18 16 28 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.15 2.84 1.96 -52.49 -0.10 2.74 16 30 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 32 H 0.12 2.07 5.97 -52.48 -0.31 1.76 16 33 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 34 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 35 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 36 H 0.12 2.18 7.72 -52.49 -0.40 1.77 16 LS Contribution 320.74 15.07 4.83 4.83 Total: -1.00 -26.34 320.74 -8.57 -34.91 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -2.84 Total: 7.12 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -3.96 Total: -17.89 kcal Atomic # 7 Polarization: -22.85 SS G_CDS: 0.77 Total: -22.07 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.66 Total: -18.22 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -4.22 Total: 13.15 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.49 Total: -1.83 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.34 -8.57 -34.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228427417.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.045 kcal (2) G-P(sol) polarization free energy of solvation -26.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds