Wall clock time and date at job start Tue Mar 31 2020 15:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00099 * 2 1 4 4 H 1.48502 * 109.47083 * 273.02310 * 3 2 1 5 5 H 1.48502 * 109.47079 * 33.01901 * 3 2 1 6 6 H 1.48492 * 109.47424 * 153.02365 * 3 2 1 7 7 C 1.37877 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99982 * 348.11284 * 7 2 1 9 9 C 1.50704 * 119.99828 * 168.11736 * 7 2 1 10 10 H 1.08996 * 109.47218 * 354.63635 * 9 7 2 11 11 O 1.42903 * 109.46800 * 234.63588 * 9 7 2 12 12 C 1.35963 * 116.99878 * 83.41069 * 11 9 7 13 13 C 1.38857 * 119.88192 * 1.26457 * 12 11 9 14 14 C 1.37851 * 119.72955 * 180.02562 * 13 12 11 15 15 C 1.39215 * 120.25108 * 0.02562 * 14 13 12 16 16 S 1.76148 * 130.85761 * 179.97438 * 15 14 13 17 17 C 1.70585 * 91.06998 * 179.97438 * 16 15 14 18 18 O 1.21639 * 124.55871 * 179.97438 * 17 16 15 19 19 O 1.32084 * 110.88820 * 359.97438 * 17 16 15 20 20 C 1.34491 * 116.88544 * 0.02562 * 19 17 16 21 21 C 1.38125 * 119.87758 * 180.98838 * 12 11 9 22 22 C 1.50702 * 109.47058 * 114.63630 * 9 7 2 23 23 C 1.38230 * 120.00109 * 262.15460 * 22 9 7 24 24 C 1.38229 * 120.00021 * 179.97438 * 23 22 9 25 25 C 1.38237 * 120.00190 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99634 * 359.97438 * 25 24 23 27 27 C 1.38233 * 120.00474 * 0.07415 * 26 25 24 28 28 H 0.97001 * 120.00127 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.13326 * 0.02562 * 13 12 11 30 30 H 1.07994 * 119.87518 * 179.97438 * 14 13 12 31 31 H 1.07997 * 119.75422 * 359.97438 * 21 12 11 32 32 H 1.08006 * 119.99658 * 359.97438 * 23 22 9 33 33 H 1.08009 * 119.99920 * 179.97438 * 24 23 22 34 34 H 1.08003 * 119.99899 * 179.72179 * 25 24 23 35 35 H 1.08003 * 119.99697 * 179.97438 * 26 25 24 36 36 H 1.07989 * 120.00287 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4327 2.0833 -1.3981 5 1 1.4800 2.6334 0.7629 6 1 3.5771 1.4226 0.6351 7 6 2.0045 -1.1941 0.0005 8 1 1.4818 -2.1192 0.1936 9 6 3.4873 -1.2081 -0.2682 10 1 3.8181 -0.2039 -0.5328 11 8 3.7672 -2.1018 -1.3476 12 6 3.6194 -1.6130 -2.6077 13 6 3.2382 -0.2912 -2.7968 14 6 3.0887 0.2009 -4.0757 15 6 3.3178 -0.6219 -5.1751 16 16 3.2117 -0.2934 -6.9024 17 6 3.6704 -1.8952 -7.2678 18 8 3.7902 -2.3388 -8.3940 19 8 3.8781 -2.5892 -6.1633 20 6 3.7000 -1.9437 -4.9969 21 6 3.8544 -2.4315 -3.6952 22 6 4.2174 -1.6684 0.9672 23 6 4.7729 -0.7402 1.8279 24 6 5.4420 -1.1624 2.9613 25 6 5.5553 -2.5127 3.2345 26 6 4.9988 -3.4409 2.3744 27 6 4.3305 -3.0188 1.2403 28 1 -0.4850 0.8400 -0.0004 29 1 3.0596 0.3486 -1.9453 30 1 2.7919 1.2284 -4.2255 31 1 4.1553 -3.4569 -3.5391 32 1 4.6840 0.3149 1.6146 33 1 5.8764 -0.4371 3.6336 34 1 6.0820 -2.8427 4.1177 35 1 5.0877 -4.4959 2.5876 36 1 3.8954 -3.7439 0.5686 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228427417.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:16 Heat of formation + Delta-G solvation = -38.390271 kcal Electronic energy + Delta-G solvation = -24515.853949 eV Core-core repulsion = 20829.722860 eV Total energy + Delta-G solvation = -3686.131089 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.060 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.41050 -41.23402 -39.98833 -39.36328 -37.68160 -35.14032 -33.20121 -31.97209 -31.70440 -30.94748 -29.22909 -27.17946 -25.21073 -24.79802 -23.55774 -23.01902 -22.05654 -20.83725 -19.59012 -18.89801 -18.63100 -18.54811 -18.32094 -17.49902 -16.74204 -16.60662 -16.35479 -15.80590 -15.54894 -15.33041 -15.16454 -14.90240 -14.69110 -14.62384 -14.30180 -14.18314 -13.78757 -13.56387 -13.25595 -12.98989 -12.76005 -12.46529 -12.21866 -12.09841 -11.79421 -11.75405 -11.70968 -11.35958 -10.85076 -10.61289 -10.04380 -9.71386 -9.49597 -8.94895 -8.48522 -6.57948 -0.45808 -0.38541 -0.09425 0.18511 0.46220 0.54979 0.61510 0.89348 1.19433 1.27700 1.35125 2.14955 2.26987 2.37096 2.94735 3.05453 3.18190 3.75741 3.79141 4.03073 4.05140 4.18986 4.24571 4.33502 4.40380 4.44643 4.55023 4.74769 4.79187 4.85437 4.97633 5.13510 5.19989 5.24592 5.27232 5.35685 5.66360 5.67275 5.70677 5.83636 6.00867 6.22996 6.38578 6.58644 7.09319 8.66889 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.015054 B = 0.003936 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.573671 B = 7112.975876 C = 8292.205802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.043 3.957 3 Si 0.893 3.107 4 H -0.236 1.236 5 H -0.278 1.278 6 H -0.226 1.226 7 C -0.541 4.541 8 H 0.037 0.963 9 C 0.217 3.783 10 H 0.056 0.944 11 O -0.317 6.317 12 C 0.198 3.802 13 C -0.212 4.212 14 C 0.003 3.997 15 C -0.256 4.256 16 S 0.126 5.874 17 C 0.435 3.565 18 O -0.449 6.449 19 O -0.260 6.260 20 C 0.129 3.871 21 C -0.151 4.151 22 C -0.070 4.070 23 C -0.144 4.144 24 C -0.119 4.119 25 C -0.132 4.132 26 C -0.123 4.123 27 C -0.122 4.122 28 H 0.275 0.725 29 H 0.136 0.864 30 H 0.166 0.834 31 H 0.161 0.839 32 H 0.121 0.879 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.143 0.857 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.791 2.502 -2.122 11.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.160 4.160 3 Si 0.714 3.286 4 H -0.160 1.160 5 H -0.204 1.204 6 H -0.149 1.149 7 C -0.578 4.578 8 H 0.056 0.944 9 C 0.163 3.837 10 H 0.073 0.927 11 O -0.230 6.230 12 C 0.148 3.852 13 C -0.232 4.232 14 C -0.018 4.018 15 C -0.369 4.369 16 S 0.366 5.634 17 C 0.172 3.828 18 O -0.341 6.341 19 O -0.172 6.172 20 C 0.079 3.921 21 C -0.171 4.171 22 C -0.071 4.071 23 C -0.162 4.162 24 C -0.137 4.137 25 C -0.150 4.150 26 C -0.141 4.141 27 C -0.141 4.141 28 H 0.085 0.915 29 H 0.154 0.846 30 H 0.184 0.816 31 H 0.179 0.821 32 H 0.139 0.861 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.161 0.839 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.495 3.013 -3.404 11.437 hybrid contribution -0.406 -0.435 0.807 1.002 sum 10.089 2.578 -2.597 10.733 Atomic orbital electron populations 1.70026 1.08304 1.29004 1.47640 1.25809 0.95296 1.02385 0.92467 0.86718 0.81206 0.79487 0.81159 1.15995 1.20378 1.14911 1.21161 0.91294 0.94582 1.50728 0.94447 1.19330 0.93686 0.89299 0.81390 0.92674 1.86093 1.81353 1.43728 1.11786 1.18546 0.90047 0.91209 0.85367 1.21651 1.06669 0.96183 0.98705 1.20372 0.93248 0.99973 0.88232 1.22557 1.18238 0.97154 0.98968 1.84910 1.74833 1.08167 0.95527 1.23956 0.80925 0.92492 0.85473 1.91013 1.52897 1.73259 1.16978 1.83094 1.75118 1.45312 1.13693 1.18341 1.00109 0.89096 0.84528 1.19179 1.10757 1.02242 0.84958 1.19944 0.95705 0.94822 0.96612 1.21214 0.99358 0.99301 0.96312 1.21380 0.98786 0.97059 0.96478 1.21447 1.00439 0.92801 1.00271 1.21422 0.97780 1.00942 0.93976 1.21027 0.99706 0.95065 0.98275 0.91535 0.84650 0.81650 0.82141 0.86132 0.83328 0.82992 0.83938 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.18 13.96 21.45 0.30 -50.88 16 2 C 0.04 2.22 5.29 84.66 0.45 2.67 16 3 Si 0.89 35.57 24.83 68.60 1.70 37.27 16 4 H -0.24 -8.31 6.56 99.48 0.65 -7.66 16 5 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.23 -8.02 4.69 99.48 0.47 -7.55 16 7 C -0.54 -28.07 8.69 25.60 0.22 -27.85 16 8 H 0.04 2.26 8.06 -2.91 -0.02 2.23 16 9 C 0.22 9.34 1.84 29.10 0.05 9.39 16 10 H 0.06 2.25 3.48 -2.39 -0.01 2.25 16 11 O -0.32 -13.15 9.04 -93.13 -0.84 -13.99 16 12 C 0.20 7.39 6.55 22.39 0.15 7.54 16 13 C -0.21 -7.59 8.77 22.33 0.20 -7.40 16 14 C 0.00 0.09 10.06 22.41 0.23 0.32 16 15 C -0.26 -7.34 6.46 22.62 0.15 -7.19 16 16 S 0.13 3.06 23.15 -56.49 -1.31 1.75 16 17 C 0.44 12.90 8.61 113.37 0.98 13.88 16 18 O -0.45 -15.05 18.05 19.24 0.35 -14.70 16 19 O -0.26 -8.08 10.06 38.36 0.39 -7.69 16 20 C 0.13 3.99 7.10 22.78 0.16 4.15 16 21 C -0.15 -4.93 9.99 22.64 0.23 -4.71 16 22 C -0.07 -2.78 4.97 -19.87 -0.10 -2.88 16 23 C -0.14 -4.96 9.67 22.27 0.22 -4.74 16 24 C -0.12 -3.27 10.05 22.27 0.22 -3.05 16 25 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 26 C -0.12 -3.55 10.05 22.27 0.22 -3.32 16 27 C -0.12 -4.46 9.36 22.27 0.21 -4.25 16 28 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.14 5.16 1.96 -2.91 -0.01 5.16 16 30 H 0.17 3.84 8.06 -2.91 -0.02 3.82 16 31 H 0.16 4.68 8.06 -2.91 -0.02 4.66 16 32 H 0.12 4.00 5.97 -2.91 -0.02 3.98 16 33 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 36 H 0.11 4.14 7.72 -2.92 -0.02 4.12 16 Total: -1.00 -61.19 320.74 5.25 -55.94 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.86 Total: 22.85 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 3.80 Total: -30.54 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 0.30 Total: -50.88 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -0.11 Total: -36.39 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 1.70 Total: 37.27 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -1.31 Total: 1.75 kcal Total: -61.19 5.25 -55.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228427417.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.548 kcal (2) G-P(sol) polarization free energy of solvation -61.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds