Wall clock time and date at job start Tue Mar 31 2020 15:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34750 * 117.00175 * 2 1 4 4 O 1.21505 * 120.00083 * 359.97438 * 3 2 1 5 5 C 1.47475 * 119.99854 * 179.97438 * 3 2 1 6 6 C 1.39765 * 120.07351 * 0.02562 * 5 3 2 7 7 C 1.38189 * 120.00671 * 179.71991 * 6 5 3 8 8 C 1.39418 * 120.02049 * 0.25441 * 7 6 5 9 9 C 1.39251 * 120.04813 * 0.02562 * 8 7 6 10 10 O 1.36003 * 119.92794 * 180.02562 * 9 8 7 11 11 C 1.42904 * 116.99940 * 176.71408 * 10 9 8 12 12 H 1.08998 * 109.46738 * 27.04092 * 11 10 9 13 13 C 1.50699 * 109.47476 * 147.04212 * 11 10 9 14 14 H 1.08002 * 119.99767 * 0.02562 * 13 11 10 15 15 C 1.37877 * 120.00139 * 179.97438 * 13 11 10 16 16 N 1.31511 * 119.99580 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 119.99952 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47442 * 59.99811 * 17 15 13 19 19 H 1.48499 * 109.46975 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47237 * 300.00073 * 17 15 13 21 21 C 1.52995 * 109.46910 * 267.04603 * 11 10 9 22 22 Cl 1.80301 * 109.47284 * 64.99647 * 21 11 10 23 23 C 1.38202 * 120.13457 * 359.97155 * 9 8 7 24 24 O 1.36435 * 108.61091 * 179.97438 * 8 7 6 25 25 C 1.43977 * 105.51209 * 342.66857 * 24 8 7 26 26 O 1.36547 * 131.37485 * 180.22080 * 7 6 5 27 27 H 1.08995 * 109.47128 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46616 * 300.00405 * 1 2 3 29 29 H 1.09005 * 109.46559 * 59.99831 * 1 2 3 30 30 H 1.08004 * 119.99408 * 359.97438 * 6 5 3 31 31 H 0.97006 * 119.99828 * 179.97438 * 16 15 13 32 32 H 1.08999 * 109.47148 * 184.99811 * 21 11 10 33 33 H 1.08996 * 109.47218 * 304.99816 * 21 11 10 34 34 H 1.07996 * 120.03174 * 180.02562 * 23 9 8 35 35 H 1.09004 * 110.56275 * 268.63896 * 25 24 8 36 36 H 1.08998 * 110.56866 * 145.77739 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2006 0.0000 4 8 1.4022 2.2197 -0.0005 5 6 3.5366 1.2777 0.0006 6 6 4.2993 0.1065 0.0006 7 6 5.6792 0.1803 -0.0047 8 6 6.3112 1.4230 -0.0047 9 6 5.5529 2.5909 0.0011 10 8 6.1720 3.8019 0.0006 11 6 5.3351 4.9583 -0.0662 12 1 4.3600 4.7263 0.3621 13 6 5.9698 6.0833 0.7101 14 1 6.9177 5.9306 1.2046 15 6 5.3409 7.3078 0.7881 16 7 4.1869 7.4938 0.1855 17 14 6.1280 8.7024 1.7497 18 1 7.4566 9.0180 1.1662 19 1 5.2583 9.9041 1.6804 20 1 6.2947 8.2937 3.1676 21 6 5.1633 5.3799 -1.5268 22 17 4.2722 4.0937 -2.4228 23 6 4.1726 2.5220 0.0064 24 8 7.6611 1.2250 -0.0099 25 6 7.8513 -0.1420 0.4002 26 8 6.6352 -0.7946 -0.0099 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.8100 -0.8564 0.0006 31 1 3.7442 8.3552 0.2407 32 1 4.5994 6.3115 -1.5722 33 1 6.1436 5.5260 -1.9805 34 1 3.5861 3.4288 0.0106 35 1 7.9734 -0.2038 1.4816 36 1 8.7106 -0.5785 -0.1088 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229685229.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:56 Heat of formation + Delta-G solvation = -158.298718 kcal Electronic energy + Delta-G solvation = -26100.527346 eV Core-core repulsion = 21964.010916 eV Total energy + Delta-G solvation = -4136.516430 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.00828 -40.28535 -38.98696 -36.70622 -36.16832 -35.92488 -34.87054 -33.49438 -30.62233 -29.80550 -29.08885 -27.58348 -25.80375 -25.37898 -24.02632 -23.00555 -21.17486 -20.83229 -18.34879 -18.15078 -17.53420 -17.18204 -16.58743 -16.34799 -16.23217 -15.98620 -15.42626 -14.84189 -14.60179 -14.42880 -13.94346 -13.72547 -13.32689 -13.29539 -13.06662 -12.77847 -12.60722 -12.34057 -12.09472 -11.98914 -11.68908 -11.41235 -11.19543 -11.07129 -10.80386 -10.77897 -10.67578 -10.45170 -10.32943 -9.74459 -9.45973 -9.26163 -8.72300 -8.02167 -7.61209 -6.46160 -4.54976 0.75296 1.48883 2.58016 2.69641 2.97460 3.13084 3.19521 3.21743 3.35403 3.53555 3.77455 3.89526 4.22433 4.74033 4.79521 4.88638 4.94014 4.99662 5.09062 5.17189 5.21626 5.30695 5.43547 5.49601 5.75736 6.03441 6.10326 6.17986 6.21035 6.32466 6.44230 6.55313 6.72322 7.06926 7.17247 7.49405 7.69154 7.86206 8.12802 8.58950 9.12737 10.60858 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.010809 B = 0.005026 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.829089 B = 5569.512531 C = 7074.957420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.514 3.486 4 O -0.491 6.491 5 C -0.088 4.088 6 C -0.096 4.096 7 C 0.049 3.951 8 C 0.019 3.981 9 C 0.169 3.831 10 O -0.296 6.296 11 C 0.202 3.798 12 H 0.054 0.946 13 C -0.524 4.524 14 H 0.078 0.922 15 C 0.065 3.935 16 N -0.886 5.886 17 Si 0.918 3.082 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 C -0.038 4.038 22 Cl -0.239 7.239 23 C -0.114 4.114 24 O -0.294 6.294 25 C 0.211 3.789 26 O -0.308 6.308 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.145 0.855 31 H 0.274 0.726 32 H 0.137 0.863 33 H 0.077 0.923 34 H 0.169 0.831 35 H 0.082 0.918 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.941 -13.917 0.147 13.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.359 3.641 4 O -0.378 6.378 5 C -0.090 4.090 6 C -0.115 4.115 7 C 0.004 3.996 8 C -0.026 4.026 9 C 0.120 3.880 10 O -0.209 6.209 11 C 0.148 3.852 12 H 0.072 0.928 13 C -0.562 4.562 14 H 0.096 0.904 15 C -0.139 4.139 16 N -0.522 5.522 17 Si 0.745 3.255 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.100 4.100 22 Cl -0.214 7.214 23 C -0.132 4.132 24 O -0.210 6.210 25 C 0.099 3.901 26 O -0.224 6.224 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.163 0.837 31 H 0.084 0.916 32 H 0.154 0.846 33 H 0.095 0.905 34 H 0.186 0.814 35 H 0.100 0.900 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.997 -13.576 -0.054 13.613 hybrid contribution 0.137 0.734 0.333 0.817 sum -0.861 -12.842 0.279 12.874 Atomic orbital electron populations 1.23259 0.76206 1.03473 1.02760 1.86545 1.23361 1.32748 1.84731 1.20877 0.88667 0.81461 0.73126 1.90897 1.66363 1.35758 1.44807 1.18330 0.88881 0.93058 1.08686 1.19908 0.88445 0.98964 1.04208 1.19154 0.90908 0.85025 1.04466 1.19143 0.82723 0.92692 1.08086 1.17674 0.89016 0.85192 0.96086 1.86288 1.37201 1.11460 1.85993 1.20691 0.92164 0.80801 0.91564 0.92831 1.20928 1.08355 0.94554 1.32360 0.90422 1.24983 0.94697 0.98768 0.95405 1.69788 1.14945 1.25446 1.42046 0.86201 0.79121 0.79965 0.80256 1.19691 1.20799 1.19682 1.25799 0.97818 0.92986 0.93399 1.98651 1.81007 1.61072 1.80622 1.21452 0.92626 0.98883 1.00286 1.87428 1.19356 1.29550 1.84629 1.25605 0.88347 0.76087 1.00076 1.87343 1.17727 1.32208 1.85169 0.88166 0.91797 0.91797 0.83710 0.91583 0.84568 0.90451 0.81352 0.90021 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.57 101.05 1.07 1.44 16 2 O -0.36 -4.87 9.80 -40.63 -0.40 -5.27 16 3 C 0.51 8.67 7.89 34.49 0.27 8.94 16 4 O -0.49 -9.59 16.13 -19.27 -0.31 -9.90 16 5 C -0.09 -1.52 5.87 -105.00 -0.62 -2.14 16 6 C -0.10 -1.48 9.62 -39.03 -0.38 -1.85 16 7 C 0.05 0.80 7.13 -39.16 -0.28 0.52 16 8 C 0.02 0.35 7.09 -38.77 -0.27 0.08 16 9 C 0.17 3.48 5.98 -39.22 -0.23 3.25 16 10 O -0.30 -6.89 9.73 -19.75 -0.19 -7.09 16 11 C 0.20 4.89 2.19 -27.89 -0.06 4.83 16 12 H 0.05 1.37 5.40 -51.93 -0.28 1.09 16 13 C -0.52 -13.51 8.89 -34.44 -0.31 -13.82 16 14 H 0.08 2.01 7.81 -52.49 -0.41 1.60 16 15 C 0.07 1.65 5.29 -17.82 -0.09 1.55 16 16 N -0.89 -22.93 11.29 55.43 0.63 -22.30 16 17 Si 0.92 19.74 29.54 -169.99 -5.02 14.71 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 C -0.04 -0.86 6.17 37.16 0.23 -0.63 16 22 Cl -0.24 -5.05 25.57 -51.86 -1.33 -6.38 16 23 C -0.11 -2.26 6.57 -39.03 -0.26 -2.51 16 24 O -0.29 -5.06 11.40 -45.83 -0.52 -5.58 16 25 C 0.21 2.54 8.89 101.05 0.90 3.43 16 26 O -0.31 -4.41 11.41 -45.85 -0.52 -4.94 16 27 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.15 1.85 7.60 -52.48 -0.40 1.45 16 31 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 32 H 0.14 3.32 5.95 -51.93 -0.31 3.01 16 33 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 34 H 0.17 3.69 4.65 -52.49 -0.24 3.44 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -29.03 326.90 -6.09 -35.12 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -3.31 Total: 3.61 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -0.03 Total: 3.08 kcal Atomic # 7 Polarization: -22.93 SS G_CDS: 0.63 Total: -22.30 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -1.95 Total: -32.77 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 17 Polarization: -5.05 SS G_CDS: -1.33 Total: -6.38 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.03 -6.09 -35.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229685229.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.183 kcal (2) G-P(sol) polarization free energy of solvation -29.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds