Wall clock time and date at job start Tue Mar 31 2020 15:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34750 * 117.00175 * 2 1 4 4 O 1.21505 * 120.00083 * 359.97438 * 3 2 1 5 5 C 1.47475 * 119.99854 * 179.97438 * 3 2 1 6 6 C 1.39765 * 120.07351 * 0.02562 * 5 3 2 7 7 C 1.38189 * 120.00671 * 179.71991 * 6 5 3 8 8 C 1.39418 * 120.02049 * 0.25441 * 7 6 5 9 9 C 1.39251 * 120.04813 * 0.02562 * 8 7 6 10 10 O 1.36003 * 119.92794 * 180.02562 * 9 8 7 11 11 C 1.42904 * 116.99940 * 176.71408 * 10 9 8 12 12 H 1.08998 * 109.46738 * 27.04092 * 11 10 9 13 13 C 1.50699 * 109.47476 * 147.04212 * 11 10 9 14 14 H 1.08002 * 119.99767 * 0.02562 * 13 11 10 15 15 C 1.37877 * 120.00139 * 179.97438 * 13 11 10 16 16 N 1.31511 * 119.99580 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 119.99952 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47442 * 59.99811 * 17 15 13 19 19 H 1.48499 * 109.46975 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47237 * 300.00073 * 17 15 13 21 21 C 1.52995 * 109.46910 * 267.04603 * 11 10 9 22 22 Cl 1.80301 * 109.47284 * 64.99647 * 21 11 10 23 23 C 1.38202 * 120.13457 * 359.97155 * 9 8 7 24 24 O 1.36435 * 108.61091 * 179.97438 * 8 7 6 25 25 C 1.43977 * 105.51209 * 342.66857 * 24 8 7 26 26 O 1.36547 * 131.37485 * 180.22080 * 7 6 5 27 27 H 1.08995 * 109.47128 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46616 * 300.00405 * 1 2 3 29 29 H 1.09005 * 109.46559 * 59.99831 * 1 2 3 30 30 H 1.08004 * 119.99408 * 359.97438 * 6 5 3 31 31 H 0.97006 * 119.99828 * 179.97438 * 16 15 13 32 32 H 1.08999 * 109.47148 * 184.99811 * 21 11 10 33 33 H 1.08996 * 109.47218 * 304.99816 * 21 11 10 34 34 H 1.07996 * 120.03174 * 180.02562 * 23 9 8 35 35 H 1.09004 * 110.56275 * 268.63896 * 25 24 8 36 36 H 1.08998 * 110.56866 * 145.77739 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2006 0.0000 4 8 1.4022 2.2197 -0.0005 5 6 3.5366 1.2777 0.0006 6 6 4.2993 0.1065 0.0006 7 6 5.6792 0.1803 -0.0047 8 6 6.3112 1.4230 -0.0047 9 6 5.5529 2.5909 0.0011 10 8 6.1720 3.8019 0.0006 11 6 5.3351 4.9583 -0.0662 12 1 4.3600 4.7263 0.3621 13 6 5.9698 6.0833 0.7101 14 1 6.9177 5.9306 1.2046 15 6 5.3409 7.3078 0.7881 16 7 4.1869 7.4938 0.1855 17 14 6.1280 8.7024 1.7497 18 1 7.4566 9.0180 1.1662 19 1 5.2583 9.9041 1.6804 20 1 6.2947 8.2937 3.1676 21 6 5.1633 5.3799 -1.5268 22 17 4.2722 4.0937 -2.4228 23 6 4.1726 2.5220 0.0064 24 8 7.6611 1.2250 -0.0099 25 6 7.8513 -0.1420 0.4002 26 8 6.6352 -0.7946 -0.0099 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.8100 -0.8564 0.0006 31 1 3.7442 8.3552 0.2407 32 1 4.5994 6.3115 -1.5722 33 1 6.1436 5.5260 -1.9805 34 1 3.5861 3.4288 0.0106 35 1 7.9734 -0.2038 1.4816 36 1 8.7106 -0.5785 -0.1088 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229685229.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:55 Heat of formation + Delta-G solvation = -175.750043 kcal Electronic energy + Delta-G solvation = -26101.284092 eV Core-core repulsion = 21964.010916 eV Total energy + Delta-G solvation = -4137.273177 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.26098 -41.55783 -40.54054 -38.06781 -37.44653 -37.24284 -36.61070 -35.37684 -32.15409 -31.24462 -30.68960 -28.57457 -27.31796 -26.85122 -25.37475 -24.50189 -22.59841 -22.32481 -19.79617 -19.59063 -18.79755 -18.54554 -18.17030 -17.59570 -17.55718 -17.39873 -16.68210 -16.54242 -16.11829 -15.88793 -15.37828 -15.03225 -14.77890 -14.61672 -14.43317 -14.10627 -13.99638 -13.92594 -13.60246 -13.27571 -13.07711 -12.99032 -12.81978 -12.77436 -12.51424 -12.08453 -11.99525 -11.82221 -11.79544 -11.52835 -11.22760 -11.03119 -10.62135 -9.33990 -9.12789 -8.38809 -6.55908 -0.63182 0.11252 1.26224 1.39625 1.43565 1.47979 1.53346 1.56197 1.77941 2.16121 2.39069 2.44192 2.54580 2.95228 3.50370 3.67208 3.78698 3.85043 3.95612 4.02551 4.22974 4.30246 4.32350 4.35105 4.36816 4.47980 4.68654 4.78715 4.82509 4.87140 5.00410 5.10795 5.19841 5.25923 5.51111 5.78075 5.89405 6.37164 6.60333 6.66840 7.16150 8.67839 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.010809 B = 0.005026 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.829089 B = 5569.512531 C = 7074.957420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.347 6.347 3 C 0.520 3.480 4 O -0.526 6.526 5 C -0.093 4.093 6 C -0.072 4.072 7 C 0.058 3.942 8 C 0.014 3.986 9 C 0.137 3.863 10 O -0.316 6.316 11 C 0.209 3.791 12 H 0.033 0.967 13 C -0.550 4.550 14 H 0.069 0.931 15 C 0.028 3.972 16 N -0.908 5.908 17 Si 0.980 3.020 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.270 1.270 21 C -0.028 4.028 22 Cl -0.224 7.224 23 C -0.125 4.125 24 O -0.317 6.317 25 C 0.201 3.799 26 O -0.303 6.303 27 H 0.143 0.857 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.180 0.820 31 H 0.277 0.723 32 H 0.120 0.880 33 H 0.079 0.921 34 H 0.141 0.859 35 H 0.108 0.892 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.544 -16.243 0.461 16.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.365 3.635 4 O -0.417 6.417 5 C -0.095 4.095 6 C -0.091 4.091 7 C 0.013 3.987 8 C -0.031 4.031 9 C 0.090 3.910 10 O -0.230 6.230 11 C 0.154 3.846 12 H 0.051 0.949 13 C -0.587 4.587 14 H 0.087 0.913 15 C -0.174 4.174 16 N -0.545 5.545 17 Si 0.803 3.197 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.194 1.194 21 C -0.090 4.090 22 Cl -0.198 7.198 23 C -0.144 4.144 24 O -0.234 6.234 25 C 0.091 3.909 26 O -0.219 6.219 27 H 0.161 0.839 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.198 0.802 31 H 0.087 0.913 32 H 0.138 0.862 33 H 0.097 0.903 34 H 0.159 0.841 35 H 0.126 0.874 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.597 -15.957 0.256 15.970 hybrid contribution -0.003 1.205 0.228 1.227 sum -0.600 -14.752 0.484 14.772 Atomic orbital electron populations 1.23665 0.73927 1.06236 1.02690 1.86527 1.25453 1.30533 1.83843 1.20799 0.88422 0.81911 0.72324 1.90885 1.67012 1.37178 1.46615 1.18408 0.89620 0.92820 1.08622 1.20183 0.88080 0.99474 1.01333 1.19230 0.91438 0.84572 1.03440 1.19286 0.83704 0.92760 1.07384 1.17876 0.89678 0.84795 0.98697 1.86206 1.37439 1.12184 1.87205 1.20410 0.91224 0.81111 0.91825 0.94935 1.21162 1.08414 0.95757 1.33373 0.91272 1.25752 0.94995 1.00674 0.95981 1.69887 1.15857 1.26048 1.42689 0.85260 0.78487 0.77114 0.78838 1.19024 1.20036 1.19446 1.25471 0.97681 0.92665 0.93228 1.98641 1.80670 1.60335 1.80120 1.21183 0.92312 0.99026 1.01851 1.87400 1.18595 1.32509 1.84868 1.26269 0.88485 0.73728 1.02384 1.87350 1.17915 1.31582 1.85097 0.83920 0.91827 0.92060 0.80234 0.91339 0.86169 0.90275 0.84126 0.87412 0.81245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.57 113.37 1.20 1.69 16 2 O -0.35 -8.71 9.80 -56.60 -0.55 -9.26 16 3 C 0.52 17.25 7.89 70.26 0.55 17.81 16 4 O -0.53 -21.01 16.13 19.82 0.32 -20.69 16 5 C -0.09 -3.19 5.87 -20.11 -0.12 -3.31 16 6 C -0.07 -2.04 9.62 22.63 0.22 -1.82 16 7 C 0.06 1.76 7.13 22.54 0.16 1.93 16 8 C 0.01 0.52 7.09 22.80 0.16 0.68 16 9 C 0.14 5.80 5.98 22.50 0.13 5.94 16 10 O -0.32 -15.40 9.73 -93.59 -0.91 -16.31 16 11 C 0.21 10.66 2.19 29.85 0.07 10.72 16 12 H 0.03 1.80 5.40 -2.39 -0.01 1.79 16 13 C -0.55 -29.45 8.89 25.60 0.23 -29.22 16 14 H 0.07 3.72 7.81 -2.91 -0.02 3.69 16 15 C 0.03 1.42 5.29 84.66 0.45 1.87 16 16 N -0.91 -48.35 11.29 21.45 0.24 -48.11 16 17 Si 0.98 40.81 29.54 68.60 2.03 42.84 16 18 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 19 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 C -0.03 -1.32 6.17 71.98 0.44 -0.87 16 22 Cl -0.22 -9.72 25.57 -2.72 -0.07 -9.79 16 23 C -0.12 -5.12 6.57 22.62 0.15 -4.98 16 24 O -0.32 -10.53 11.40 -74.95 -0.85 -11.39 16 25 C 0.20 4.20 8.89 113.37 1.01 5.20 16 26 O -0.30 -7.65 11.41 -76.61 -0.87 -8.52 16 27 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.18 3.82 7.60 -2.91 -0.02 3.80 16 31 H 0.28 13.90 8.31 -92.70 -0.77 13.13 16 32 H 0.12 6.13 5.95 -2.39 -0.01 6.11 16 33 H 0.08 3.66 8.14 -2.39 -0.02 3.64 16 34 H 0.14 6.59 4.65 -2.91 -0.01 6.58 16 35 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.17 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -65.32 326.90 5.12 -60.20 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 1.15 Total: 15.39 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 4.65 Total: 5.65 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.24 Total: -48.11 kcal Atomic # 8 Polarization: -63.30 SS G_CDS: -2.87 Total: -66.17 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Atomic # 17 Polarization: -9.72 SS G_CDS: -0.07 Total: -9.79 kcal Total: -65.32 5.12 -60.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229685229.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.551 kcal (2) G-P(sol) polarization free energy of solvation -65.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds