Wall clock time and date at job start Tue Mar 31 2020 14:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47628 * 337.82287 * 3 2 1 5 5 N 1.46894 * 109.47354 * 174.89782 * 4 3 2 6 6 C 1.46904 * 111.00196 * 199.75891 * 5 4 3 7 7 C 1.50706 * 109.46657 * 66.04950 * 6 5 4 8 8 H 1.07996 * 120.00198 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99745 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99712 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99805 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47271 * 90.00001 * 11 9 7 13 13 H 1.48509 * 109.46702 * 209.99862 * 11 9 7 14 14 H 1.48501 * 109.47305 * 329.99504 * 11 9 7 15 15 C 1.46904 * 110.99764 * 75.80938 * 5 4 3 16 16 C 1.50700 * 109.46940 * 198.82883 * 15 5 4 17 17 C 1.38283 * 119.96804 * 255.09574 * 16 15 5 18 18 C 1.38236 * 120.12879 * 179.97438 * 17 16 15 19 19 C 1.38289 * 120.06229 * 0.02901 * 18 17 16 20 20 Cl 1.73600 * 120.03307 * 180.02562 * 19 18 17 21 21 C 1.38767 * 119.93568 * 359.97438 * 19 18 17 22 22 O 1.35952 * 120.06081 * 180.02562 * 21 19 18 23 23 C 1.38249 * 119.97114 * 74.82219 * 16 15 5 24 24 Cl 1.73600 * 120.02772 * 359.97438 * 23 16 15 25 25 H 1.09007 * 109.46882 * 217.82629 * 3 2 1 26 26 H 1.08996 * 109.47690 * 97.82924 * 3 2 1 27 27 H 1.08999 * 109.46686 * 54.90065 * 4 3 2 28 28 H 1.08996 * 109.47042 * 294.90409 * 4 3 2 29 29 H 1.08993 * 109.47266 * 186.04400 * 6 5 4 30 30 H 1.09001 * 109.46891 * 306.05183 * 6 5 4 31 31 H 0.97002 * 119.99793 * 179.97438 * 10 9 7 32 32 H 1.08997 * 109.46977 * 78.82930 * 15 5 4 33 33 H 1.08999 * 109.47323 * 318.82572 * 15 5 4 34 34 H 1.08003 * 119.93728 * 0.02562 * 17 16 15 35 35 H 1.07992 * 119.97084 * 180.02562 * 18 17 16 36 36 H 0.96698 * 114.00320 * 90.00353 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3349 0.5445 5 7 4.5825 -1.3823 0.4311 6 6 5.0706 -2.7666 0.4904 7 6 4.5923 -3.5203 -0.7239 8 1 3.9861 -3.0210 -1.4652 9 6 4.9278 -4.8476 -0.8878 10 7 4.5101 -5.5054 -1.9472 11 14 5.9746 -5.7117 0.3956 12 1 5.0938 -6.3187 1.4257 13 1 6.7794 -6.7757 -0.2569 14 1 6.8826 -4.7278 1.0380 15 6 5.2177 -0.5554 1.4659 16 6 6.6370 -0.2486 1.0626 17 6 7.6873 -0.9028 1.6799 18 6 8.9904 -0.6243 1.3121 19 6 9.2472 0.3103 0.3257 20 17 10.8840 0.6589 -0.1360 21 6 8.1952 0.9684 -0.2954 22 8 8.4447 1.8873 -1.2658 23 6 6.8875 0.6825 0.0718 24 17 5.5679 1.4977 -0.7080 25 1 2.9710 0.8126 0.6303 26 1 2.9714 0.1408 -1.0180 27 1 2.6831 -2.1520 -0.0305 28 1 2.8319 -1.4339 1.5914 29 1 6.1603 -2.7671 0.5124 30 1 4.6887 -3.2482 1.3907 31 1 4.7464 -6.4390 -2.0627 32 1 5.2177 -1.0951 2.4129 33 1 4.6626 0.3759 1.5783 34 1 7.4891 -1.6334 2.4502 35 1 9.8087 -1.1371 1.7956 36 1 8.4801 1.5171 -2.1584 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232627587.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:27 Heat of formation + Delta-G solvation = 3.320104 kcal Electronic energy + Delta-G solvation = -23113.216813 eV Core-core repulsion = 19456.710616 eV Total energy + Delta-G solvation = -3656.506196 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.08085 -37.95916 -36.81384 -36.69380 -36.19241 -35.92167 -32.72374 -31.96842 -30.56538 -29.85657 -27.80514 -25.39019 -23.05633 -22.86459 -21.83414 -20.12772 -18.32846 -17.37701 -16.98862 -16.94584 -16.48292 -15.69779 -15.10403 -14.87115 -14.57176 -14.35730 -14.08648 -13.55599 -13.42456 -13.09434 -12.92153 -12.56231 -12.52119 -12.29504 -12.16691 -12.08706 -11.95523 -11.48802 -11.30500 -11.13989 -11.03629 -10.91140 -10.85936 -10.64230 -10.45996 -10.26043 -9.94214 -9.38630 -8.70871 -8.65804 -8.61616 -7.68675 -6.13774 -4.12022 0.90523 0.96918 1.84345 2.36037 2.94762 3.00084 3.20052 3.25117 3.27056 3.29607 3.93535 4.12868 4.32911 4.61156 4.81843 4.85685 5.05946 5.18456 5.25047 5.27639 5.33111 5.45246 5.56210 5.66399 5.79759 5.85147 5.96216 6.14647 6.26323 6.39591 6.42478 6.68891 6.77091 7.40498 7.42860 7.65656 7.75721 7.80770 8.51690 8.94746 9.47047 10.99038 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009108 B = 0.005456 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.371133 B = 5130.764926 C = 7343.375212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.218 3.782 3 C -0.026 4.026 4 C 0.066 3.934 5 N -0.514 5.514 6 C 0.162 3.838 7 C -0.512 4.512 8 H 0.083 0.917 9 C 0.071 3.929 10 N -0.896 5.896 11 Si 0.870 3.130 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.266 1.266 15 C 0.080 3.920 16 C -0.036 4.036 17 C -0.097 4.097 18 C -0.095 4.095 19 C -0.057 4.057 20 Cl -0.057 7.057 21 C 0.120 3.880 22 O -0.479 6.479 23 C -0.025 4.025 24 Cl -0.037 7.037 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.104 0.896 28 H 0.034 0.966 29 H 0.034 0.966 30 H -0.013 1.013 31 H 0.264 0.736 32 H 0.047 0.953 33 H 0.085 0.915 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.633 12.990 6.769 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.100 4.100 3 C -0.067 4.067 4 C -0.064 4.064 5 N -0.238 5.238 6 C 0.036 3.964 7 C -0.550 4.550 8 H 0.101 0.899 9 C -0.131 4.131 10 N -0.535 5.535 11 Si 0.698 3.302 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.191 1.191 15 C -0.048 4.048 16 C -0.038 4.038 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.085 4.085 20 Cl -0.028 7.028 21 C 0.073 3.927 22 O -0.289 6.289 23 C -0.053 4.053 24 Cl -0.007 7.007 25 H 0.116 0.884 26 H 0.134 0.866 27 H 0.122 0.878 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.005 0.995 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 8.097 13.497 6.559 17.051 hybrid contribution 0.976 -1.272 0.776 1.781 sum 9.073 12.224 7.334 16.898 Atomic orbital electron populations 1.81173 1.13193 1.09073 1.09553 1.29305 0.95366 0.92724 0.92609 1.19413 0.80626 1.00917 1.05728 1.21922 0.88972 0.96104 0.99367 1.61854 1.03919 1.13281 1.44696 1.20262 0.96085 0.83257 0.96787 1.20978 1.33310 0.94762 1.05942 0.89872 1.24876 0.95656 0.97304 0.95262 1.69880 1.45703 1.10210 1.27678 0.86943 0.81158 0.79925 0.82194 1.20365 1.21177 1.19077 1.21170 0.90422 0.99037 0.94151 1.19746 0.96809 0.93423 0.93816 1.21045 0.90901 0.99165 1.00503 1.20994 0.97847 0.96436 0.96112 1.21127 0.85689 1.00377 1.01292 1.98365 1.18313 1.94415 1.91756 1.17745 0.89096 0.91969 0.93895 1.84834 1.93228 1.32773 1.18097 1.20923 0.88027 0.98222 0.98115 1.98361 1.45873 1.77158 1.79340 0.88402 0.86603 0.87754 0.94756 0.94826 0.99533 0.92589 0.93487 0.89722 0.84218 0.84250 0.74836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.67 18.54 42.16 0.78 -6.89 16 2 C 0.22 3.14 15.43 -20.76 -0.32 2.82 16 3 C -0.03 -0.32 5.43 -29.52 -0.16 -0.48 16 4 C 0.07 0.99 4.75 -3.83 -0.02 0.97 16 5 N -0.51 -8.41 4.24 -237.52 -1.01 -9.41 16 6 C 0.16 3.32 3.62 -4.97 -0.02 3.30 16 7 C -0.51 -12.99 8.79 -34.44 -0.30 -13.29 16 8 H 0.08 2.31 7.56 -52.49 -0.40 1.91 16 9 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 10 N -0.90 -26.02 13.96 55.43 0.77 -25.25 16 11 Si 0.87 19.93 27.47 -169.99 -4.67 15.27 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.27 -5.68 6.54 56.52 0.37 -5.31 16 15 C 0.08 1.05 4.27 -4.97 -0.02 1.03 16 16 C -0.04 -0.48 4.79 -104.60 -0.50 -0.98 16 17 C -0.10 -1.19 8.96 -39.57 -0.35 -1.55 16 18 C -0.10 -1.10 9.83 -39.56 -0.39 -1.49 16 19 C -0.06 -0.70 6.33 -39.37 -0.25 -0.95 16 20 Cl -0.06 -0.64 28.50 -51.86 -1.48 -2.12 16 21 C 0.12 1.52 6.69 -39.18 -0.26 1.26 16 22 O -0.48 -5.45 12.42 -19.59 -0.24 -5.69 16 23 C -0.02 -0.33 6.33 -39.37 -0.25 -0.58 16 24 Cl -0.04 -0.46 26.75 -51.86 -1.39 -1.84 16 25 H 0.10 0.97 6.90 -51.92 -0.36 0.62 16 26 H 0.12 1.45 8.12 -51.93 -0.42 1.03 16 27 H 0.10 1.91 6.57 -51.93 -0.34 1.56 16 28 H 0.03 0.47 8.00 -51.93 -0.42 0.06 16 29 H 0.03 0.71 5.88 -51.93 -0.31 0.40 16 30 H -0.01 -0.27 7.55 -51.93 -0.39 -0.66 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.05 0.58 7.82 -51.93 -0.41 0.17 16 33 H 0.08 0.94 6.02 -51.93 -0.31 0.62 16 34 H 0.14 1.51 8.00 -52.48 -0.42 1.09 16 35 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.39 3.18 9.06 45.56 0.41 3.60 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -30.22 341.16 -7.98 -38.19 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -2.95 Total: 0.74 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -2.94 Total: -8.12 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.55 Total: -41.56 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.24 Total: -5.69 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.67 Total: 15.27 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -2.87 Total: -3.97 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.22 -7.98 -38.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232627587.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.514 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds