Wall clock time and date at job start Tue Mar 31 2020 14:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47628 * 337.82287 * 3 2 1 5 5 N 1.46894 * 109.47354 * 174.89782 * 4 3 2 6 6 C 1.46904 * 111.00196 * 199.75891 * 5 4 3 7 7 C 1.50706 * 109.46657 * 66.04950 * 6 5 4 8 8 H 1.07996 * 120.00198 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99745 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99712 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99805 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47271 * 90.00001 * 11 9 7 13 13 H 1.48509 * 109.46702 * 209.99862 * 11 9 7 14 14 H 1.48501 * 109.47305 * 329.99504 * 11 9 7 15 15 C 1.46904 * 110.99764 * 75.80938 * 5 4 3 16 16 C 1.50700 * 109.46940 * 198.82883 * 15 5 4 17 17 C 1.38283 * 119.96804 * 255.09574 * 16 15 5 18 18 C 1.38236 * 120.12879 * 179.97438 * 17 16 15 19 19 C 1.38289 * 120.06229 * 0.02901 * 18 17 16 20 20 Cl 1.73600 * 120.03307 * 180.02562 * 19 18 17 21 21 C 1.38767 * 119.93568 * 359.97438 * 19 18 17 22 22 O 1.35952 * 120.06081 * 180.02562 * 21 19 18 23 23 C 1.38249 * 119.97114 * 74.82219 * 16 15 5 24 24 Cl 1.73600 * 120.02772 * 359.97438 * 23 16 15 25 25 H 1.09007 * 109.46882 * 217.82629 * 3 2 1 26 26 H 1.08996 * 109.47690 * 97.82924 * 3 2 1 27 27 H 1.08999 * 109.46686 * 54.90065 * 4 3 2 28 28 H 1.08996 * 109.47042 * 294.90409 * 4 3 2 29 29 H 1.08993 * 109.47266 * 186.04400 * 6 5 4 30 30 H 1.09001 * 109.46891 * 306.05183 * 6 5 4 31 31 H 0.97002 * 119.99793 * 179.97438 * 10 9 7 32 32 H 1.08997 * 109.46977 * 78.82930 * 15 5 4 33 33 H 1.08999 * 109.47323 * 318.82572 * 15 5 4 34 34 H 1.08003 * 119.93728 * 0.02562 * 17 16 15 35 35 H 1.07992 * 119.97084 * 180.02562 * 18 17 16 36 36 H 0.96698 * 114.00320 * 90.00353 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3349 0.5445 5 7 4.5825 -1.3823 0.4311 6 6 5.0706 -2.7666 0.4904 7 6 4.5923 -3.5203 -0.7239 8 1 3.9861 -3.0210 -1.4652 9 6 4.9278 -4.8476 -0.8878 10 7 4.5101 -5.5054 -1.9472 11 14 5.9746 -5.7117 0.3956 12 1 5.0938 -6.3187 1.4257 13 1 6.7794 -6.7757 -0.2569 14 1 6.8826 -4.7278 1.0380 15 6 5.2177 -0.5554 1.4659 16 6 6.6370 -0.2486 1.0626 17 6 7.6873 -0.9028 1.6799 18 6 8.9904 -0.6243 1.3121 19 6 9.2472 0.3103 0.3257 20 17 10.8840 0.6589 -0.1360 21 6 8.1952 0.9684 -0.2954 22 8 8.4447 1.8873 -1.2658 23 6 6.8875 0.6825 0.0718 24 17 5.5679 1.4977 -0.7080 25 1 2.9710 0.8126 0.6303 26 1 2.9714 0.1408 -1.0180 27 1 2.6831 -2.1520 -0.0305 28 1 2.8319 -1.4339 1.5914 29 1 6.1603 -2.7671 0.5124 30 1 4.6887 -3.2482 1.3907 31 1 4.7464 -6.4390 -2.0627 32 1 5.2177 -1.0951 2.4129 33 1 4.6626 0.3759 1.5783 34 1 7.4891 -1.6334 2.4502 35 1 9.8087 -1.1371 1.7956 36 1 8.4801 1.5171 -2.1584 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232627587.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:26 Heat of formation + Delta-G solvation = -16.407920 kcal Electronic energy + Delta-G solvation = -23114.072284 eV Core-core repulsion = 19456.710616 eV Total energy + Delta-G solvation = -3657.361668 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.00544 -39.11463 -37.82728 -37.63076 -37.21338 -37.03301 -34.64294 -33.01169 -31.87747 -30.79640 -29.30051 -26.55893 -24.53275 -23.83341 -22.92757 -21.44730 -19.30046 -18.81742 -18.54020 -17.87344 -17.43479 -16.71013 -16.39023 -16.27302 -15.92755 -15.36336 -15.25552 -14.87475 -14.56895 -14.34692 -14.09188 -14.01671 -13.64749 -13.53427 -13.36845 -13.20088 -13.05493 -12.76700 -12.59078 -12.44714 -12.17835 -11.98750 -11.96449 -11.82537 -11.73027 -11.52460 -11.42575 -11.26400 -10.69629 -9.60699 -9.56071 -8.97675 -8.18178 -6.19610 -0.02430 0.06287 0.93722 1.40914 1.42443 1.42648 1.51804 1.75037 1.82156 2.33031 2.42143 2.95667 3.07144 3.17553 3.55731 3.81958 3.92012 4.12960 4.16383 4.32529 4.36407 4.42382 4.60992 4.66835 4.76153 4.94069 4.96846 5.00363 5.07436 5.21306 5.23918 5.36474 5.54391 5.66024 6.06208 6.36546 6.59856 6.63492 6.71094 6.89378 7.43541 8.98163 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009108 B = 0.005456 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.371133 B = 5130.764926 C = 7343.375212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.240 3.760 3 C -0.013 4.013 4 C 0.068 3.932 5 N -0.522 5.522 6 C 0.173 3.827 7 C -0.503 4.503 8 H 0.043 0.957 9 C 0.006 3.994 10 N -0.952 5.952 11 Si 0.934 3.066 12 H -0.273 1.273 13 H -0.294 1.294 14 H -0.234 1.234 15 C 0.080 3.920 16 C -0.050 4.050 17 C -0.103 4.103 18 C -0.094 4.094 19 C -0.067 4.067 20 Cl -0.052 7.052 21 C 0.114 3.886 22 O -0.485 6.485 23 C -0.039 4.039 24 Cl -0.037 7.037 25 H 0.133 0.867 26 H 0.116 0.884 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.038 0.962 30 H -0.007 1.007 31 H 0.262 0.738 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.293 14.007 9.033 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.076 4.076 3 C -0.053 4.053 4 C -0.061 4.061 5 N -0.245 5.245 6 C 0.046 3.954 7 C -0.542 4.542 8 H 0.061 0.939 9 C -0.191 4.191 10 N -0.594 5.594 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.220 1.220 14 H -0.157 1.157 15 C -0.047 4.047 16 C -0.052 4.052 17 C -0.121 4.121 18 C -0.112 4.112 19 C -0.094 4.094 20 Cl -0.023 7.023 21 C 0.067 3.933 22 O -0.297 6.297 23 C -0.067 4.067 24 Cl -0.008 7.008 25 H 0.150 0.850 26 H 0.134 0.866 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.011 0.989 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.175 0.825 35 H 0.179 0.821 36 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 9.761 14.554 8.835 19.625 hybrid contribution 0.470 -1.491 -0.001 1.564 sum 10.231 13.063 8.834 18.798 Atomic orbital electron populations 1.81196 1.14602 1.10570 1.11121 1.29574 0.95520 0.91333 0.91221 1.19406 0.79072 1.00503 1.06338 1.21808 0.88316 0.96078 0.99914 1.61666 1.04544 1.11333 1.46994 1.19981 0.96076 0.85104 0.94271 1.21296 1.31453 0.94860 1.06576 0.93861 1.25783 0.97420 0.98448 0.97403 1.70061 1.48331 1.10513 1.30499 0.85910 0.79791 0.78999 0.79468 1.19880 1.22013 1.15652 1.21275 0.90456 0.99371 0.93573 1.19866 0.97135 0.93883 0.94318 1.21303 0.90837 0.99254 1.00744 1.21277 0.98423 0.95946 0.95579 1.21298 0.85946 1.00622 1.01564 1.98366 1.17782 1.94407 1.91745 1.17861 0.89197 0.92055 0.94220 1.84796 1.93164 1.32919 1.18824 1.21077 0.88314 0.98743 0.98547 1.98354 1.45862 1.77188 1.79389 0.84960 0.86620 0.91755 0.92849 0.94368 0.98910 0.92941 0.91817 0.87527 0.82525 0.82124 0.73364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.67 18.54 20.00 0.37 -16.30 16 2 C 0.24 6.70 15.43 89.44 1.38 8.08 16 3 C -0.01 -0.29 5.43 28.79 0.16 -0.14 16 4 C 0.07 1.96 4.75 86.30 0.41 2.37 16 5 N -0.52 -16.02 4.24 -905.37 -3.83 -19.86 16 6 C 0.17 6.75 3.62 85.56 0.31 7.06 16 7 C -0.50 -25.83 8.79 25.60 0.22 -25.60 16 8 H 0.04 2.51 7.56 -2.91 -0.02 2.48 16 9 C 0.01 0.33 5.47 84.66 0.46 0.79 16 10 N -0.95 -57.19 13.96 21.45 0.30 -56.89 16 11 Si 0.93 40.40 27.47 68.60 1.88 42.28 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 14 H -0.23 -8.79 6.54 99.48 0.65 -8.14 16 15 C 0.08 1.83 4.27 85.56 0.37 2.19 16 16 C -0.05 -1.19 4.79 -19.85 -0.10 -1.29 16 17 C -0.10 -2.16 8.96 22.28 0.20 -1.96 16 18 C -0.09 -1.88 9.83 22.28 0.22 -1.66 16 19 C -0.07 -1.48 6.33 22.41 0.14 -1.34 16 20 Cl -0.05 -1.06 28.50 -2.72 -0.08 -1.14 16 21 C 0.11 2.68 6.69 22.53 0.15 2.83 16 22 O -0.48 -10.29 12.42 -93.01 -1.16 -11.45 16 23 C -0.04 -0.94 6.33 22.41 0.14 -0.80 16 24 Cl -0.04 -0.86 26.75 -2.72 -0.07 -0.93 16 25 H 0.13 2.16 6.90 -2.38 -0.02 2.15 16 26 H 0.12 2.75 8.12 -2.39 -0.02 2.73 16 27 H 0.06 2.39 6.57 -2.39 -0.02 2.37 16 28 H 0.05 1.33 8.00 -2.39 -0.02 1.31 16 29 H 0.04 1.49 5.88 -2.39 -0.01 1.47 16 30 H -0.01 -0.26 7.55 -2.39 -0.02 -0.28 16 31 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.06 1.28 7.82 -2.39 -0.02 1.26 16 33 H 0.11 1.93 6.02 -2.39 -0.01 1.92 16 34 H 0.16 2.71 8.00 -2.91 -0.02 2.68 16 35 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.41 6.07 9.06 -74.06 -0.67 5.39 16 Total: -1.00 -66.90 341.16 1.90 -65.00 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.42 Total: 8.76 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 4.07 Total: -9.48 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -3.16 Total: -93.04 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -1.16 Total: -11.45 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 1.88 Total: 42.28 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -0.15 Total: -2.07 kcal Total: -66.90 1.90 -65.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232627587.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.597 kcal (2) G-P(sol) polarization free energy of solvation -66.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds