Wall clock time and date at job start Tue Mar 31 2020 15:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47275 * 2 1 4 4 C 1.46902 * 111.00245 * 298.15408 * 3 2 1 5 5 C 1.50703 * 109.46783 * 293.02960 * 4 3 2 6 6 H 1.07996 * 120.00110 * 354.96302 * 5 4 3 7 7 C 1.37878 * 119.99822 * 174.95964 * 5 4 3 8 8 N 1.31519 * 119.99846 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46851 * 60.00364 * 9 7 5 11 11 H 1.48505 * 109.47187 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47078 * 300.00186 * 9 7 5 13 13 C 1.46909 * 110.99980 * 62.10778 * 3 2 1 14 14 C 1.50696 * 109.47106 * 66.04409 * 13 3 2 15 15 N 1.31865 * 119.65418 * 269.98259 * 14 13 3 16 16 C 1.31911 * 121.76687 * 180.02562 * 15 14 13 17 17 Br 1.89102 * 119.56770 * 179.97438 * 16 15 14 18 18 C 1.38371 * 120.86140 * 359.97438 * 16 15 14 19 19 C 1.38498 * 119.21130 * 0.06878 * 18 16 15 20 20 C 1.38668 * 119.65096 * 89.99994 * 14 13 3 21 21 O 1.35936 * 120.46183 * 359.72925 * 20 14 13 22 22 C 1.42901 * 117.00074 * 179.97438 * 21 20 14 23 23 H 1.09000 * 109.47247 * 299.79404 * 1 2 3 24 24 H 1.09007 * 109.47102 * 59.79234 * 1 2 3 25 25 H 1.08994 * 109.47301 * 179.79006 * 1 2 3 26 26 H 1.09001 * 109.47641 * 240.00032 * 2 1 3 27 27 H 1.09000 * 109.47155 * 119.99688 * 2 1 3 28 28 H 1.08996 * 109.46963 * 53.02880 * 4 3 2 29 29 H 1.08994 * 109.47396 * 173.03231 * 4 3 2 30 30 H 0.97001 * 119.99765 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.46835 * 306.04588 * 13 3 2 32 32 H 1.08993 * 109.47055 * 186.04844 * 13 3 2 33 33 H 1.07998 * 120.38865 * 179.97438 * 18 16 15 34 34 H 1.08000 * 120.80286 * 179.97438 * 19 18 16 35 35 H 1.08992 * 109.47307 * 300.00388 * 22 21 20 36 36 H 1.09008 * 109.46566 * 59.99961 * 22 21 20 37 37 H 1.08994 * 109.46939 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5851 2.0971 -1.2092 5 6 2.2619 1.4983 -2.4152 6 1 3.0068 0.7267 -2.2889 7 6 1.9299 1.9356 -3.6800 8 7 1.0229 2.8755 -3.8338 9 14 2.7682 1.1929 -5.1750 10 1 2.5003 -0.2671 -5.2183 11 1 2.2387 1.8306 -6.4072 12 1 4.2322 1.4252 -5.0879 13 6 1.5903 2.0952 1.2122 14 6 2.2546 1.4800 2.4168 15 7 1.6629 0.4877 3.0525 16 6 2.2066 -0.0809 4.1114 17 35 1.3030 -1.4993 4.9760 18 6 3.4293 0.3470 4.5977 19 6 4.0839 1.3874 3.9595 20 6 3.4816 1.9635 2.8452 21 8 4.0898 2.9832 2.1832 22 6 5.3517 3.4236 2.6887 23 1 -0.3634 0.5106 0.8918 24 1 -0.3634 0.5171 -0.8882 25 1 -0.3633 -1.0276 -0.0038 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.5043 2.0054 -1.3161 29 1 1.8540 3.1501 -1.1271 30 1 0.7891 3.1829 -4.7236 31 1 0.5079 2.0172 1.3148 32 1 1.8734 3.1451 1.1376 33 1 3.8672 -0.1238 5.4654 34 1 5.0391 1.7421 4.3175 35 1 5.2309 3.7713 3.7146 36 1 6.0607 2.5959 2.6667 37 1 5.7263 4.2391 2.0701 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232815536.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:19 Heat of formation + Delta-G solvation = 10.960813 kcal Electronic energy + Delta-G solvation = -20441.050543 eV Core-core repulsion = 17265.571916 eV Total energy + Delta-G solvation = -3175.478626 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.81077 -38.22970 -37.02856 -32.98431 -32.22359 -32.06905 -30.14671 -29.08125 -27.62369 -27.05136 -25.01954 -23.15512 -22.65404 -22.01576 -19.30385 -18.10826 -17.29029 -16.23149 -16.00138 -15.73240 -14.94215 -14.85169 -14.49868 -14.17396 -14.04675 -13.63150 -13.34302 -12.74529 -12.65455 -12.03710 -11.77440 -11.70644 -11.38775 -11.32586 -11.06239 -10.86416 -10.66550 -10.57125 -10.46795 -10.42406 -9.97606 -9.80403 -9.76014 -9.55997 -9.15481 -8.37447 -8.23992 -7.10122 -5.96500 -3.96792 0.93951 1.08544 1.37769 3.17629 3.37235 3.40880 3.43971 3.56566 4.31795 4.48658 4.52067 4.68053 4.89508 4.99778 5.05792 5.26257 5.38832 5.40504 5.49360 5.61020 5.79662 5.98322 6.03380 6.09632 6.24242 6.36003 6.38419 6.70243 6.82822 7.08152 7.14953 7.38325 7.53063 7.80068 7.87160 8.16407 8.28083 8.61749 9.10701 9.66566 11.14131 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.003886 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.487187 B = 7202.906305 C = 8387.605467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.064 3.936 3 N -0.526 5.526 4 C 0.191 3.809 5 C -0.501 4.501 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.103 3.897 14 C 0.139 3.861 15 N -0.416 5.416 16 C 0.080 3.920 17 Br -0.019 7.019 18 C -0.106 4.106 19 C -0.168 4.168 20 C 0.115 3.885 21 O -0.286 6.286 22 C 0.024 3.976 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.005 0.995 29 H 0.026 0.974 30 H 0.261 0.739 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 -3.945 21.025 22.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.065 4.065 3 N -0.250 5.250 4 C 0.066 3.934 5 C -0.540 4.540 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.026 4.026 14 C -0.004 4.004 15 N -0.127 5.127 16 C -0.136 4.136 17 Br 0.064 6.936 18 C -0.128 4.128 19 C -0.195 4.195 20 C 0.065 3.935 21 O -0.196 6.196 22 C -0.072 4.072 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.023 0.977 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.160 0.840 34 H 0.164 0.836 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.541 -4.549 20.718 21.692 hybrid contribution 0.774 0.175 -0.524 0.951 sum 5.315 -4.374 20.194 21.335 Atomic orbital electron populations 1.22303 0.99098 1.00913 1.01842 1.21927 0.92519 0.91052 1.00962 1.62391 1.59124 1.02077 1.01420 1.19783 0.94838 0.93655 0.85113 1.21089 1.21839 1.21079 0.89999 0.92088 1.24954 0.95332 0.95303 0.98928 1.69950 1.32048 1.29157 1.22786 0.86598 0.79784 0.79283 0.81950 1.20342 1.21432 1.20283 1.20903 0.97048 0.97626 0.87000 1.20931 0.90349 0.92293 0.96790 1.67387 1.33482 1.06558 1.05301 1.22497 0.94700 0.99045 0.97368 1.96716 1.78803 1.42590 1.75447 1.21672 0.93847 0.96702 1.00619 1.21652 1.01884 0.98975 0.96991 1.19970 0.93176 0.89167 0.91158 1.86304 1.34387 1.46854 1.52051 1.23152 0.83557 1.00466 0.99998 0.93128 0.91671 0.93684 0.90525 0.93003 0.97696 0.95602 0.92978 0.93139 0.89295 0.83983 0.83631 0.92840 0.92508 0.87660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.62 9.26 37.16 0.34 -3.28 16 2 C 0.06 1.34 5.65 -3.83 -0.02 1.32 16 3 N -0.53 -11.68 4.69 -237.52 -1.11 -12.79 16 4 C 0.19 4.97 4.52 -4.97 -0.02 4.94 16 5 C -0.50 -14.13 8.40 -34.44 -0.29 -14.42 16 6 H 0.06 1.72 7.37 -52.49 -0.39 1.34 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 9 Si 0.90 21.83 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.10 1.98 4.83 -4.97 -0.02 1.95 16 14 C 0.14 2.38 5.56 -82.42 -0.46 1.92 16 15 N -0.42 -6.91 9.12 -7.77 -0.07 -6.98 16 16 C 0.08 1.12 7.16 -17.47 -0.13 0.99 16 17 Br -0.02 -0.23 33.86 -68.01 -2.30 -2.54 16 18 C -0.11 -1.22 9.83 -39.44 -0.39 -1.61 16 19 C -0.17 -1.93 9.14 -39.15 -0.36 -2.29 16 20 C 0.12 1.70 6.67 -39.08 -0.26 1.44 16 21 O -0.29 -4.17 9.55 -19.54 -0.19 -4.36 16 22 C 0.02 0.22 9.83 101.05 0.99 1.21 16 23 H 0.05 0.96 6.33 -51.93 -0.33 0.63 16 24 H 0.06 1.44 6.29 -51.92 -0.33 1.11 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 1.74 6.98 -51.93 -0.36 1.37 16 27 H 0.05 1.05 6.45 -51.93 -0.33 0.71 16 28 H 0.01 0.15 6.01 -51.93 -0.31 -0.17 16 29 H 0.03 0.72 7.91 -51.93 -0.41 0.30 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.05 0.98 6.07 -51.93 -0.32 0.66 16 32 H 0.09 1.69 7.30 -51.93 -0.38 1.31 16 33 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.15 1.17 6.45 -52.49 -0.34 0.83 16 35 H 0.05 0.38 7.70 -51.93 -0.40 -0.02 16 36 H 0.06 0.46 7.69 -51.92 -0.40 0.07 16 37 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 322.86 15.07 4.87 4.87 Total: -1.00 -31.15 322.86 -8.50 -39.64 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -4.70 Total: -2.35 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -0.71 Total: -6.32 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.45 Total: -45.74 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -0.19 Total: -4.36 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -2.30 Total: -2.54 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.15 -8.50 -39.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232815536.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.604 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds