Wall clock time and date at job start Tue Mar 31 2020 15:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47275 * 2 1 4 4 C 1.46902 * 111.00245 * 298.15408 * 3 2 1 5 5 C 1.50703 * 109.46783 * 293.02960 * 4 3 2 6 6 H 1.07996 * 120.00110 * 354.96302 * 5 4 3 7 7 C 1.37878 * 119.99822 * 174.95964 * 5 4 3 8 8 N 1.31519 * 119.99846 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46851 * 60.00364 * 9 7 5 11 11 H 1.48505 * 109.47187 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47078 * 300.00186 * 9 7 5 13 13 C 1.46909 * 110.99980 * 62.10778 * 3 2 1 14 14 C 1.50696 * 109.47106 * 66.04409 * 13 3 2 15 15 N 1.31865 * 119.65418 * 269.98259 * 14 13 3 16 16 C 1.31911 * 121.76687 * 180.02562 * 15 14 13 17 17 Br 1.89102 * 119.56770 * 179.97438 * 16 15 14 18 18 C 1.38371 * 120.86140 * 359.97438 * 16 15 14 19 19 C 1.38498 * 119.21130 * 0.06878 * 18 16 15 20 20 C 1.38668 * 119.65096 * 89.99994 * 14 13 3 21 21 O 1.35936 * 120.46183 * 359.72925 * 20 14 13 22 22 C 1.42901 * 117.00074 * 179.97438 * 21 20 14 23 23 H 1.09000 * 109.47247 * 299.79404 * 1 2 3 24 24 H 1.09007 * 109.47102 * 59.79234 * 1 2 3 25 25 H 1.08994 * 109.47301 * 179.79006 * 1 2 3 26 26 H 1.09001 * 109.47641 * 240.00032 * 2 1 3 27 27 H 1.09000 * 109.47155 * 119.99688 * 2 1 3 28 28 H 1.08996 * 109.46963 * 53.02880 * 4 3 2 29 29 H 1.08994 * 109.47396 * 173.03231 * 4 3 2 30 30 H 0.97001 * 119.99765 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.46835 * 306.04588 * 13 3 2 32 32 H 1.08993 * 109.47055 * 186.04844 * 13 3 2 33 33 H 1.07998 * 120.38865 * 179.97438 * 18 16 15 34 34 H 1.08000 * 120.80286 * 179.97438 * 19 18 16 35 35 H 1.08992 * 109.47307 * 300.00388 * 22 21 20 36 36 H 1.09008 * 109.46566 * 59.99961 * 22 21 20 37 37 H 1.08994 * 109.46939 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5851 2.0971 -1.2092 5 6 2.2619 1.4983 -2.4152 6 1 3.0068 0.7267 -2.2889 7 6 1.9299 1.9356 -3.6800 8 7 1.0229 2.8755 -3.8338 9 14 2.7682 1.1929 -5.1750 10 1 2.5003 -0.2671 -5.2183 11 1 2.2387 1.8306 -6.4072 12 1 4.2322 1.4252 -5.0879 13 6 1.5903 2.0952 1.2122 14 6 2.2546 1.4800 2.4168 15 7 1.6629 0.4877 3.0525 16 6 2.2066 -0.0809 4.1114 17 35 1.3030 -1.4993 4.9760 18 6 3.4293 0.3470 4.5977 19 6 4.0839 1.3874 3.9595 20 6 3.4816 1.9635 2.8452 21 8 4.0898 2.9832 2.1832 22 6 5.3517 3.4236 2.6887 23 1 -0.3634 0.5106 0.8918 24 1 -0.3634 0.5171 -0.8882 25 1 -0.3633 -1.0276 -0.0038 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.5043 2.0054 -1.3161 29 1 1.8540 3.1501 -1.1271 30 1 0.7891 3.1829 -4.7236 31 1 0.5079 2.0172 1.3148 32 1 1.8734 3.1451 1.1376 33 1 3.8672 -0.1238 5.4654 34 1 5.0391 1.7421 4.3175 35 1 5.2309 3.7713 3.7146 36 1 6.0607 2.5959 2.6667 37 1 5.7263 4.2391 2.0701 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232815536.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:18 Heat of formation + Delta-G solvation = -10.083986 kcal Electronic energy + Delta-G solvation = -20441.963114 eV Core-core repulsion = 17265.571916 eV Total energy + Delta-G solvation = -3176.391197 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.87933 -39.29451 -38.68733 -34.83826 -33.66995 -33.07784 -31.43008 -30.69621 -29.10425 -28.06877 -26.65903 -25.01605 -23.65052 -23.43543 -21.02073 -19.08208 -18.40028 -18.30350 -17.15317 -16.91791 -16.67418 -16.40995 -15.90358 -15.42455 -15.18433 -14.90934 -14.65324 -14.35722 -14.10912 -13.62054 -13.16876 -13.11017 -12.88291 -12.75894 -12.58105 -12.50866 -12.43448 -12.27629 -11.87308 -11.53890 -11.50134 -11.43268 -11.30824 -10.83184 -10.68927 -10.55616 -9.32195 -8.91636 -8.15418 -6.24556 -0.10356 0.07647 0.37403 1.42014 1.44988 1.52789 2.27148 2.40641 2.49654 3.16783 3.17964 3.53053 3.59338 3.76128 3.95544 4.26338 4.31282 4.37812 4.41397 4.43463 4.52648 4.63972 4.70352 4.73693 4.85973 4.93119 5.00375 5.02533 5.17160 5.25426 5.37479 5.50709 5.69853 6.09810 6.21316 6.36640 6.63653 6.71563 6.90518 7.44009 8.94956 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.003886 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.487187 B = 7202.906305 C = 8387.605467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.072 3.928 3 N -0.530 5.530 4 C 0.208 3.792 5 C -0.517 4.517 6 H 0.057 0.943 7 C 0.005 3.995 8 N -0.933 5.933 9 Si 0.965 3.035 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.111 3.889 14 C 0.104 3.896 15 N -0.440 5.440 16 C 0.061 3.939 17 Br -0.006 7.006 18 C -0.090 4.090 19 C -0.152 4.152 20 C 0.108 3.892 21 O -0.318 6.318 22 C 0.013 3.987 23 H 0.055 0.945 24 H 0.035 0.965 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.065 0.935 28 H -0.018 1.018 29 H 0.000 1.000 30 H 0.263 0.737 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.181 0.819 34 H 0.187 0.813 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.317 -5.077 22.699 24.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.057 4.057 3 N -0.254 5.254 4 C 0.082 3.918 5 C -0.556 4.556 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.574 5.574 9 Si 0.790 3.210 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.194 1.194 13 C -0.017 4.017 14 C -0.037 4.037 15 N -0.151 5.151 16 C -0.156 4.156 17 Br 0.078 6.922 18 C -0.112 4.112 19 C -0.179 4.179 20 C 0.058 3.942 21 O -0.230 6.230 22 C -0.081 4.081 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.083 0.917 28 H -0.001 1.001 29 H 0.018 0.982 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.198 0.802 34 H 0.205 0.795 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.559 -5.679 22.408 24.029 hybrid contribution 0.183 0.532 -0.895 1.058 sum 6.742 -5.147 21.513 23.125 Atomic orbital electron populations 1.22154 0.98243 1.01845 1.00594 1.21826 0.93131 0.90252 1.00455 1.62262 1.59366 1.02517 1.01289 1.19409 0.93141 0.92537 0.86732 1.21346 1.21955 1.21114 0.91138 0.92494 1.25823 0.95853 0.95571 1.02027 1.70079 1.33309 1.30356 1.23625 0.85508 0.78903 0.78631 0.77998 1.19532 1.20783 1.19378 1.20721 0.96760 0.97226 0.87015 1.20442 0.92069 0.94190 0.97032 1.67212 1.34476 1.06906 1.06512 1.22916 0.95953 0.99551 0.97149 1.96721 1.78932 1.41798 1.74778 1.22131 0.92426 0.95746 1.00851 1.22077 1.02859 0.97860 0.95096 1.20018 0.92635 0.89415 0.92099 1.86262 1.36493 1.46948 1.53259 1.23488 0.81762 1.01245 1.01628 0.92596 0.94554 0.91564 0.92511 0.91693 1.00071 0.98165 0.92777 0.94106 0.90194 0.80189 0.79541 0.90144 0.91072 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.90 9.26 71.98 0.67 -6.23 16 2 C 0.07 3.08 5.65 86.30 0.49 3.57 16 3 N -0.53 -24.51 4.69 -905.37 -4.24 -28.75 16 4 C 0.21 11.39 4.52 85.56 0.39 11.78 16 5 C -0.52 -30.01 8.40 25.60 0.21 -29.79 16 6 H 0.06 3.28 7.37 -2.91 -0.02 3.26 16 7 C 0.01 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 9 Si 0.96 45.08 29.54 68.60 2.03 47.10 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 C 0.11 4.47 4.83 85.55 0.41 4.88 16 14 C 0.10 3.56 5.56 42.66 0.24 3.80 16 15 N -0.44 -14.33 9.12 -178.50 -1.63 -15.95 16 16 C 0.06 1.59 7.16 84.71 0.61 2.19 16 17 Br -0.01 -0.13 33.86 -20.37 -0.69 -0.82 16 18 C -0.09 -1.73 9.83 22.36 0.22 -1.51 16 19 C -0.15 -2.95 9.14 22.55 0.21 -2.75 16 20 C 0.11 3.06 6.67 22.59 0.15 3.21 16 21 O -0.32 -9.07 9.55 -92.82 -0.89 -9.96 16 22 C 0.01 0.21 9.83 113.37 1.11 1.32 16 23 H 0.06 2.19 6.33 -2.39 -0.02 2.17 16 24 H 0.04 1.67 6.29 -2.38 -0.01 1.65 16 25 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.06 2.64 6.98 -2.39 -0.02 2.62 16 27 H 0.06 2.63 6.45 -2.39 -0.02 2.62 16 28 H -0.02 -1.08 6.01 -2.39 -0.01 -1.09 16 29 H 0.00 0.02 7.91 -2.39 -0.02 0.00 16 30 H 0.26 15.13 8.31 -92.71 -0.77 14.35 16 31 H 0.04 1.67 6.07 -2.39 -0.01 1.66 16 32 H 0.08 3.25 7.30 -2.39 -0.02 3.23 16 33 H 0.18 2.08 8.06 -2.91 -0.02 2.05 16 34 H 0.19 2.00 6.45 -2.91 -0.02 1.98 16 35 H 0.08 0.85 7.70 -2.39 -0.02 0.83 16 36 H 0.07 0.94 7.69 -2.38 -0.02 0.92 16 37 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -69.65 322.86 1.11 -68.54 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: 1.08 Total: 5.13 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 5.17 Total: -8.77 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -5.59 Total: -101.23 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.89 Total: -9.96 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 35 Polarization: -0.13 SS G_CDS: -0.69 Total: -0.82 kcal Total: -69.65 1.11 -68.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232815536.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.454 kcal (2) G-P(sol) polarization free energy of solvation -69.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds