Wall clock time and date at job start Tue Mar 31 2020 15:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47263 * 2 1 4 4 N 1.46896 * 109.47184 * 175.35386 * 3 2 1 5 5 C 1.46903 * 111.00187 * 294.62375 * 4 3 2 6 6 C 1.50699 * 109.47052 * 284.80211 * 5 4 3 7 7 H 1.07998 * 120.00457 * 4.60904 * 6 5 4 8 8 C 1.37881 * 119.99933 * 184.60539 * 6 5 4 9 9 N 1.31514 * 120.00037 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99869 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47295 * 60.00153 * 10 8 6 12 12 H 1.48502 * 109.47099 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47197 * 299.99713 * 10 8 6 14 14 C 1.46898 * 111.00110 * 58.57697 * 4 3 2 15 15 C 1.50699 * 109.46811 * 71.90062 * 14 4 3 16 16 C 1.38426 * 120.43428 * 256.13340 * 15 14 4 17 17 C 1.38860 * 118.47487 * 179.76350 * 16 15 14 18 18 Br 1.89099 * 120.36778 * 180.21916 * 17 16 15 19 19 C 1.38179 * 119.26521 * 0.50766 * 17 16 15 20 20 N 1.31932 * 120.82246 * 359.75468 * 19 17 16 21 21 C 1.32272 * 121.65774 * 359.97270 * 20 19 17 22 22 O 1.35692 * 119.67304 * 180.02562 * 21 20 19 23 23 H 1.09002 * 109.47269 * 300.00478 * 1 2 3 24 24 H 1.08997 * 109.46958 * 59.99770 * 1 2 3 25 25 H 1.08997 * 109.47328 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46763 * 239.99564 * 2 1 3 27 27 H 1.09006 * 109.46733 * 120.00163 * 2 1 3 28 28 H 1.09006 * 109.47022 * 55.35723 * 3 2 1 29 29 H 1.08997 * 109.47325 * 295.35381 * 3 2 1 30 30 H 1.09004 * 109.47058 * 44.80403 * 5 4 3 31 31 H 1.08996 * 109.47375 * 164.80464 * 5 4 3 32 32 H 0.97001 * 120.00226 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.47261 * 191.89814 * 14 4 3 34 34 H 1.09003 * 109.47125 * 311.90157 * 14 4 3 35 35 H 1.07993 * 120.76235 * 359.97438 * 16 15 14 36 36 H 1.08006 * 119.58544 * 179.72984 * 19 17 16 37 37 H 0.96698 * 113.99738 * 275.07376 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5047 1.4439 0.1122 5 6 3.9339 0.9069 1.4104 6 6 3.6912 1.9357 2.4846 7 1 3.1935 2.8629 2.2418 8 6 4.1046 1.6932 3.7774 9 7 4.7102 0.5639 4.0733 10 14 3.8032 2.9681 5.1090 11 1 2.3443 3.2129 5.2388 12 1 4.3390 2.4703 6.4014 13 1 4.4873 4.2350 4.7453 14 6 4.1183 0.6981 -0.9947 15 6 3.9824 1.4897 -2.2699 16 6 3.0406 1.1330 -3.2196 17 6 2.9470 1.8937 -4.3775 18 35 1.6752 1.4581 -5.7074 19 6 3.7975 2.9690 -4.5499 20 7 4.6887 3.2805 -3.6282 21 6 4.8041 2.5831 -2.5103 22 8 5.7345 2.9395 -1.5892 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6104 1.9797 0.8455 29 1 1.7463 1.9317 -0.9286 30 1 3.3653 0.0047 1.6363 31 1 4.9963 0.6665 1.3710 32 1 5.0014 0.3935 4.9827 33 1 5.1741 0.5330 -0.7804 34 1 3.6159 -0.2626 -1.1081 35 1 2.3912 0.2846 -3.0621 36 1 3.7322 3.5616 -5.4505 37 1 6.6142 2.5749 -1.7573 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233187238.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:58 Heat of formation + Delta-G solvation = -0.055178 kcal Electronic energy + Delta-G solvation = -20398.476938 eV Core-core repulsion = 17222.520623 eV Total energy + Delta-G solvation = -3175.956316 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.63367 -37.53615 -36.95888 -33.30745 -32.86481 -32.49706 -31.34546 -29.11785 -27.32252 -26.38207 -24.18661 -23.43356 -22.15313 -21.86780 -19.33148 -18.71351 -17.15019 -16.27438 -16.08814 -15.33826 -15.05089 -14.81024 -14.29340 -14.01695 -13.69946 -13.47891 -13.27412 -13.13571 -12.48480 -12.10019 -11.71559 -11.51290 -11.39297 -11.25355 -11.14092 -11.02222 -10.92698 -10.71707 -10.56494 -10.52051 -10.03116 -9.77989 -9.66466 -9.51448 -9.24356 -8.66623 -8.39676 -7.21275 -6.00741 -4.00685 0.75255 1.06907 1.37816 3.35641 3.39253 3.40950 3.43963 3.72751 4.44564 4.54680 4.64737 4.79232 4.92282 5.18381 5.35623 5.39583 5.41569 5.44777 5.63170 5.72837 5.77711 5.92762 6.00432 6.08450 6.23368 6.28433 6.34953 6.42297 6.60265 6.81880 7.22216 7.34486 7.62436 7.79745 7.81937 8.08511 8.18494 8.53183 9.05830 9.62771 11.09727 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.019641 B = 0.003615 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.236432 B = 7743.461234 C = 8628.976625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.165 4.165 3 C 0.064 3.936 4 N -0.520 5.520 5 C 0.192 3.808 6 C -0.499 4.499 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.901 5.901 10 Si 0.896 3.104 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.095 3.905 15 C -0.118 4.118 16 C -0.033 4.033 17 C -0.161 4.161 18 Br -0.042 7.042 19 C 0.147 3.853 20 N -0.501 5.501 21 C 0.350 3.650 22 O -0.455 6.455 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.049 0.951 30 H -0.002 1.002 31 H 0.030 0.970 32 H 0.261 0.739 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.144 0.856 36 H 0.164 0.836 37 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.371 -1.482 -20.375 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.204 4.204 3 C -0.065 4.065 4 N -0.242 5.242 5 C 0.067 3.933 6 C -0.538 4.538 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.541 5.541 10 Si 0.724 3.276 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.034 4.034 15 C -0.123 4.123 16 C -0.060 4.060 17 C -0.243 4.243 18 Br 0.042 6.958 19 C -0.012 4.012 20 N -0.220 5.220 21 C 0.170 3.830 22 O -0.261 6.261 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.016 0.984 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.161 0.839 36 H 0.181 0.819 37 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -4.432 -0.237 -20.506 20.981 hybrid contribution -0.279 -0.979 1.099 1.498 sum -4.712 -1.216 -19.407 20.008 Atomic orbital electron populations 1.21653 0.96198 1.00807 1.01466 1.22212 0.95926 1.00346 1.01915 1.22088 0.88843 0.94369 1.01202 1.62344 1.05882 1.53114 1.02910 1.19821 0.95754 0.94341 0.83339 1.21085 1.37380 1.03171 0.92148 0.92085 1.24943 0.95396 0.95568 0.98606 1.69935 1.40423 1.23910 1.19873 0.86589 0.78472 0.81793 0.80731 1.20363 1.21438 1.20177 1.20928 1.00975 0.93280 0.88194 1.21133 0.97133 0.96342 0.97698 1.21435 0.95663 0.98222 0.90695 1.22820 1.01437 1.02780 0.97280 1.96703 1.54763 1.93677 1.50624 1.22437 0.89062 0.92824 0.96918 1.67389 1.22327 1.29845 1.02476 1.19160 0.90931 0.87431 0.85435 1.84992 1.21635 1.74991 1.44491 0.92579 0.93402 0.93488 0.93094 0.90667 0.90072 0.93245 0.98406 0.95150 0.92961 0.89945 0.93913 0.83864 0.81929 0.74547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.91 37.16 0.37 -1.63 16 2 C -0.17 -2.69 5.27 -26.73 -0.14 -2.83 16 3 C 0.06 1.18 5.09 -3.83 -0.02 1.16 16 4 N -0.52 -10.64 4.58 -237.52 -1.09 -11.73 16 5 C 0.19 4.75 4.64 -4.97 -0.02 4.73 16 6 C -0.50 -13.81 8.66 -34.44 -0.30 -14.11 16 7 H 0.06 1.71 7.59 -52.49 -0.40 1.31 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 10 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.10 1.58 4.57 -4.98 -0.02 1.55 16 15 C -0.12 -1.75 4.72 -104.32 -0.49 -2.24 16 16 C -0.03 -0.42 9.10 -39.28 -0.36 -0.77 16 17 C -0.16 -1.91 6.25 -39.37 -0.25 -2.16 16 18 Br -0.04 -0.42 33.73 -68.01 -2.29 -2.71 16 19 C 0.15 1.80 10.94 -17.53 -0.19 1.61 16 20 N -0.50 -7.38 10.39 -13.31 -0.14 -7.52 16 21 C 0.35 5.40 7.72 -17.13 -0.13 5.27 16 22 O -0.46 -7.17 12.88 -18.78 -0.24 -7.41 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.75 6.27 -51.93 -0.33 0.42 16 27 H 0.07 1.42 6.09 -51.93 -0.32 1.11 16 28 H 0.08 1.68 7.34 -51.93 -0.38 1.30 16 29 H 0.05 0.86 7.14 -51.93 -0.37 0.49 16 30 H 0.00 -0.04 5.85 -51.93 -0.30 -0.35 16 31 H 0.03 0.81 7.66 -51.93 -0.40 0.41 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.08 1.36 7.53 -51.93 -0.39 0.97 16 34 H 0.04 0.66 5.66 -51.93 -0.29 0.37 16 35 H 0.14 1.64 7.93 -52.49 -0.42 1.23 16 36 H 0.16 1.54 8.06 -52.48 -0.42 1.12 16 37 H 0.40 4.10 9.06 45.56 0.41 4.52 16 LS Contribution 326.94 15.07 4.93 4.93 Total: -1.00 -30.94 326.94 -8.78 -39.72 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -4.01 Total: 1.53 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -1.65 Total: -7.95 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.49 Total: -44.80 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.24 Total: -7.41 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.29 Total: -2.71 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.94 -8.78 -39.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233187238.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.664 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds