Wall clock time and date at job start Tue Mar 31 2020 15:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47263 * 2 1 4 4 N 1.46896 * 109.47184 * 175.35386 * 3 2 1 5 5 C 1.46903 * 111.00187 * 294.62375 * 4 3 2 6 6 C 1.50699 * 109.47052 * 284.80211 * 5 4 3 7 7 H 1.07998 * 120.00457 * 4.60904 * 6 5 4 8 8 C 1.37881 * 119.99933 * 184.60539 * 6 5 4 9 9 N 1.31514 * 120.00037 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99869 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47295 * 60.00153 * 10 8 6 12 12 H 1.48502 * 109.47099 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47197 * 299.99713 * 10 8 6 14 14 C 1.46898 * 111.00110 * 58.57697 * 4 3 2 15 15 C 1.50699 * 109.46811 * 71.90062 * 14 4 3 16 16 C 1.38426 * 120.43428 * 256.13340 * 15 14 4 17 17 C 1.38860 * 118.47487 * 179.76350 * 16 15 14 18 18 Br 1.89099 * 120.36778 * 180.21916 * 17 16 15 19 19 C 1.38179 * 119.26521 * 0.50766 * 17 16 15 20 20 N 1.31932 * 120.82246 * 359.75468 * 19 17 16 21 21 C 1.32272 * 121.65774 * 359.97270 * 20 19 17 22 22 O 1.35692 * 119.67304 * 180.02562 * 21 20 19 23 23 H 1.09002 * 109.47269 * 300.00478 * 1 2 3 24 24 H 1.08997 * 109.46958 * 59.99770 * 1 2 3 25 25 H 1.08997 * 109.47328 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46763 * 239.99564 * 2 1 3 27 27 H 1.09006 * 109.46733 * 120.00163 * 2 1 3 28 28 H 1.09006 * 109.47022 * 55.35723 * 3 2 1 29 29 H 1.08997 * 109.47325 * 295.35381 * 3 2 1 30 30 H 1.09004 * 109.47058 * 44.80403 * 5 4 3 31 31 H 1.08996 * 109.47375 * 164.80464 * 5 4 3 32 32 H 0.97001 * 120.00226 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.47261 * 191.89814 * 14 4 3 34 34 H 1.09003 * 109.47125 * 311.90157 * 14 4 3 35 35 H 1.07993 * 120.76235 * 359.97438 * 16 15 14 36 36 H 1.08006 * 119.58544 * 179.72984 * 19 17 16 37 37 H 0.96698 * 113.99738 * 275.07376 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5047 1.4439 0.1122 5 6 3.9339 0.9069 1.4104 6 6 3.6912 1.9357 2.4846 7 1 3.1935 2.8629 2.2418 8 6 4.1046 1.6932 3.7774 9 7 4.7102 0.5639 4.0733 10 14 3.8032 2.9681 5.1090 11 1 2.3443 3.2129 5.2388 12 1 4.3390 2.4703 6.4014 13 1 4.4873 4.2350 4.7453 14 6 4.1183 0.6981 -0.9947 15 6 3.9824 1.4897 -2.2699 16 6 3.0406 1.1330 -3.2196 17 6 2.9470 1.8937 -4.3775 18 35 1.6752 1.4581 -5.7074 19 6 3.7975 2.9690 -4.5499 20 7 4.6887 3.2805 -3.6282 21 6 4.8041 2.5831 -2.5103 22 8 5.7345 2.9395 -1.5892 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6104 1.9797 0.8455 29 1 1.7463 1.9317 -0.9286 30 1 3.3653 0.0047 1.6363 31 1 4.9963 0.6665 1.3710 32 1 5.0014 0.3935 4.9827 33 1 5.1741 0.5330 -0.7804 34 1 3.6159 -0.2626 -1.1081 35 1 2.3912 0.2846 -3.0621 36 1 3.7322 3.5616 -5.4505 37 1 6.6142 2.5749 -1.7573 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233187238.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:57 Heat of formation + Delta-G solvation = -23.210377 kcal Electronic energy + Delta-G solvation = -20399.481023 eV Core-core repulsion = 17222.520623 eV Total energy + Delta-G solvation = -3176.960400 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.72304 -39.04608 -38.08177 -34.94552 -34.35967 -33.62028 -32.72880 -30.16893 -29.08584 -27.71619 -25.82598 -24.52042 -23.74000 -23.11703 -20.84432 -19.82158 -18.37868 -18.20128 -17.23241 -16.88087 -16.48732 -16.18441 -15.89521 -15.27005 -15.16030 -14.68768 -14.33743 -14.28205 -14.17433 -13.51353 -13.16302 -13.01657 -12.79181 -12.67634 -12.62749 -12.41666 -12.35108 -12.23981 -12.15631 -11.80788 -11.45009 -11.35676 -11.29357 -10.73383 -10.56116 -10.52453 -9.68998 -8.84530 -8.15496 -6.23437 -0.27594 0.02934 0.45976 1.40768 1.43260 1.50925 2.36510 2.44071 2.68578 3.15792 3.39415 3.56260 3.69547 3.76502 3.95146 4.10961 4.16950 4.32250 4.47891 4.50599 4.57367 4.70966 4.77728 4.83766 4.94566 5.05166 5.13428 5.16788 5.29623 5.32441 5.40654 5.51089 5.70150 6.12268 6.43558 6.60063 6.68170 6.79718 6.90436 7.44584 8.93719 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.019641 B = 0.003615 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.236432 B = 7743.461234 C = 8628.976625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.156 4.156 3 C 0.069 3.931 4 N -0.534 5.534 5 C 0.210 3.790 6 C -0.515 4.515 7 H 0.051 0.949 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.274 1.274 14 C 0.101 3.899 15 C -0.131 4.131 16 C -0.025 4.025 17 C -0.160 4.160 18 Br -0.016 7.016 19 C 0.151 3.849 20 N -0.520 5.520 21 C 0.337 3.663 22 O -0.481 6.481 23 H 0.044 0.956 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.066 0.934 30 H -0.018 1.018 31 H 0.004 0.996 32 H 0.263 0.737 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.160 0.840 36 H 0.191 0.809 37 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.770 -1.244 -22.162 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.195 4.195 3 C -0.060 4.060 4 N -0.256 5.256 5 C 0.084 3.916 6 C -0.553 4.553 7 H 0.069 0.931 8 C -0.191 4.191 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.199 1.199 14 C -0.028 4.028 15 C -0.136 4.136 16 C -0.052 4.052 17 C -0.242 4.242 18 Br 0.069 6.931 19 C -0.008 4.008 20 N -0.239 5.239 21 C 0.158 3.842 22 O -0.289 6.289 23 H 0.063 0.937 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.000 1.000 31 H 0.022 0.978 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.178 0.822 36 H 0.208 0.792 37 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -5.831 -0.002 -22.317 23.066 hybrid contribution 0.132 -1.056 1.493 1.833 sum -5.700 -1.058 -20.824 21.615 Atomic orbital electron populations 1.21619 0.94031 1.02086 1.01891 1.22094 0.97780 0.98365 1.01291 1.22017 0.87581 0.95744 1.00635 1.62173 1.07367 1.53954 1.02147 1.19411 0.93814 0.93095 0.85275 1.21383 1.37192 1.03336 0.93412 0.93065 1.25736 0.95129 0.97452 1.00798 1.70044 1.41281 1.25545 1.20422 0.85600 0.78666 0.79253 0.78079 1.19522 1.20691 1.19915 1.20848 1.00346 0.93805 0.87754 1.20878 0.98616 0.96704 0.97429 1.21594 0.94857 0.98443 0.90328 1.22920 1.01600 1.02188 0.97476 1.96743 1.53587 1.93500 1.49312 1.22954 0.87986 0.92867 0.97014 1.67415 1.23519 1.30255 1.02752 1.19281 0.91201 0.87941 0.85779 1.84925 1.23042 1.75568 1.45398 0.93719 0.91418 0.91792 0.90961 0.93918 0.92998 0.91540 1.00037 0.97788 0.92818 0.90750 0.92575 0.82222 0.79182 0.72572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.91 71.98 0.71 -2.87 16 2 C -0.16 -4.98 5.27 30.59 0.16 -4.81 16 3 C 0.07 2.54 5.09 86.30 0.44 2.98 16 4 N -0.53 -22.30 4.58 -905.38 -4.15 -26.45 16 5 C 0.21 10.81 4.64 85.56 0.40 11.21 16 6 C -0.51 -29.34 8.66 25.60 0.22 -29.12 16 7 H 0.05 2.96 7.59 -2.91 -0.02 2.93 16 8 C 0.01 0.38 5.46 84.66 0.46 0.85 16 9 N -0.93 -55.58 13.29 21.45 0.28 -55.29 16 10 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 13 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 14 C 0.10 3.35 4.57 85.56 0.39 3.74 16 15 C -0.13 -3.77 4.72 -19.67 -0.09 -3.86 16 16 C -0.02 -0.57 9.10 22.46 0.20 -0.37 16 17 C -0.16 -3.35 6.25 22.40 0.14 -3.21 16 18 Br -0.02 -0.26 33.73 -20.37 -0.69 -0.95 16 19 C 0.15 3.33 10.94 84.66 0.93 4.26 16 20 N -0.52 -14.67 10.39 -308.86 -3.21 -17.87 16 21 C 0.34 10.26 7.72 84.78 0.65 10.92 16 22 O -0.48 -15.44 12.88 -90.11 -1.16 -16.60 16 23 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.97 6.27 -2.39 -0.01 1.95 16 27 H 0.04 1.64 6.09 -2.38 -0.01 1.63 16 28 H 0.05 2.20 7.34 -2.38 -0.02 2.18 16 29 H 0.07 2.23 7.14 -2.39 -0.02 2.21 16 30 H -0.02 -0.97 5.85 -2.38 -0.01 -0.98 16 31 H 0.00 0.22 7.66 -2.39 -0.02 0.21 16 32 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 33 H 0.07 2.55 7.53 -2.39 -0.02 2.53 16 34 H 0.06 1.69 5.66 -2.39 -0.01 1.68 16 35 H 0.16 3.12 7.93 -2.91 -0.02 3.10 16 36 H 0.19 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.41 8.92 9.06 -74.06 -0.67 8.25 16 Total: -1.00 -67.31 326.94 -1.85 -69.16 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.42 Total: 11.23 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 4.62 Total: -10.29 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -7.07 Total: -99.61 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -1.16 Total: -16.60 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -0.69 Total: -0.95 kcal Total: -67.31 -1.85 -69.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233187238.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.945 kcal (2) G-P(sol) polarization free energy of solvation -67.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds