Wall clock time and date at job start Tue Mar 31 2020 15:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46888 * 2 1 4 4 C 1.53004 * 109.46888 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47304 * 179.97438 * 4 3 2 6 6 C 1.36937 * 119.99661 * 86.65345 * 5 4 3 7 7 H 1.08002 * 120.00136 * 38.75114 * 6 5 4 8 8 C 1.38812 * 119.99964 * 218.46378 * 6 5 4 9 9 N 1.31618 * 120.00147 * 18.87136 * 8 6 5 10 10 Si 1.86804 * 120.00130 * 198.87371 * 8 6 5 11 11 H 1.48502 * 109.46894 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47104 * 119.99850 * 10 8 6 13 13 H 1.48495 * 109.47084 * 240.00017 * 10 8 6 14 14 C 1.46498 * 120.00047 * 266.65946 * 5 4 3 15 15 C 1.50695 * 109.46976 * 269.99485 * 14 5 4 16 16 C 1.38424 * 120.43404 * 104.72691 * 15 14 5 17 17 C 1.38856 * 118.47389 * 179.75644 * 16 15 14 18 18 Br 1.89099 * 120.36611 * 180.21669 * 17 16 15 19 19 C 1.38175 * 119.26791 * 0.51466 * 17 16 15 20 20 N 1.31931 * 120.82007 * 359.74646 * 19 17 16 21 21 C 1.32263 * 121.65787 * 359.97438 * 20 19 17 22 22 O 1.35699 * 119.67529 * 180.02562 * 21 20 19 23 23 H 1.08994 * 109.46989 * 300.00116 * 1 2 3 24 24 H 1.09001 * 109.47075 * 60.00307 * 1 2 3 25 25 H 1.09003 * 109.46990 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46688 * 240.00402 * 2 1 3 27 27 H 1.08996 * 109.46940 * 120.00143 * 2 1 3 28 28 H 1.08994 * 109.47400 * 60.00135 * 3 2 1 29 29 H 1.08996 * 109.47447 * 299.99833 * 3 2 1 30 30 H 1.09002 * 109.47426 * 60.00308 * 4 3 2 31 31 H 1.09001 * 109.47075 * 299.99693 * 4 3 2 32 32 H 0.97001 * 120.00152 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.47047 * 29.99913 * 14 5 4 34 34 H 1.09003 * 109.46767 * 150.00001 * 14 5 4 35 35 H 1.07999 * 120.76200 * 0.02562 * 16 15 14 36 36 H 1.08004 * 119.58896 * 179.72021 * 19 17 16 37 37 H 0.96699 * 114.00152 * 270.02387 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2208 3.4929 1.1836 7 1 4.6051 2.9738 2.0492 8 6 3.8973 4.8401 1.2693 9 7 3.1067 5.3856 0.3694 10 14 4.5839 5.8789 2.6618 11 1 5.4393 5.0345 3.5339 12 1 5.3937 6.9889 2.0984 13 1 3.4641 6.4388 3.4603 14 6 4.3728 3.4889 -1.2668 15 6 5.8178 3.2443 -1.6174 16 6 6.1552 2.3400 -2.6096 17 6 7.4991 2.1499 -2.9031 18 35 8.0199 0.9321 -4.2527 19 6 8.4518 2.8559 -2.1938 20 7 8.0985 3.7072 -1.2497 21 6 6.8288 3.9190 -0.9457 22 8 6.5108 4.8042 0.0324 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8899 30 1 3.9338 0.9286 -0.8891 31 1 3.9330 0.9288 0.8909 32 1 2.8803 6.3269 0.4295 33 1 3.7349 3.0893 -2.0551 34 1 4.1995 4.5604 -1.1673 35 1 5.3906 1.7979 -3.1462 36 1 9.4987 2.7088 -2.4146 37 1 6.4541 4.4121 0.9145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233187792.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:03 Heat of formation + Delta-G solvation = 4.469650 kcal Electronic energy + Delta-G solvation = -20648.508504 eV Core-core repulsion = 17472.748400 eV Total energy + Delta-G solvation = -3175.760104 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.05608 -36.63821 -36.11205 -34.16460 -32.58590 -31.91896 -31.02986 -28.79922 -27.87265 -25.93667 -24.06948 -22.87119 -22.02344 -20.76198 -19.95165 -18.13667 -16.85558 -16.59729 -15.69430 -14.88017 -14.87718 -14.50000 -13.91802 -13.76086 -13.50863 -13.29891 -12.91983 -12.82465 -12.29026 -12.08858 -11.75626 -11.39014 -11.17143 -11.01234 -10.87341 -10.80595 -10.64203 -10.49708 -10.40787 -10.28634 -10.06417 -10.03423 -9.73513 -9.20469 -9.05399 -8.59304 -8.19034 -6.73885 -5.95389 -3.55619 1.22281 1.57092 1.72065 3.26259 3.34224 3.40607 3.87567 4.34344 4.35920 5.02202 5.09516 5.22201 5.27889 5.39953 5.42697 5.62390 5.65128 5.70048 6.00332 6.04854 6.17991 6.21826 6.25000 6.34337 6.36528 6.42705 6.57323 6.65481 6.78519 6.85440 7.02812 7.22500 7.50408 7.66647 8.14071 8.36528 8.39274 9.01593 9.63128 10.23146 11.05321 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.005103 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.042146 B = 5485.252286 C = 7593.882196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.131 4.131 4 C 0.148 3.852 5 N -0.575 5.575 6 C -0.282 4.282 7 H 0.063 0.937 8 C 0.036 3.964 9 N -0.871 5.871 10 Si 0.883 3.117 11 H -0.274 1.274 12 H -0.278 1.278 13 H -0.288 1.288 14 C 0.182 3.818 15 C -0.131 4.131 16 C -0.048 4.048 17 C -0.162 4.162 18 Br -0.057 7.057 19 C 0.131 3.869 20 N -0.507 5.507 21 C 0.350 3.650 22 O -0.465 6.465 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.032 0.968 31 H 0.039 0.961 32 H 0.258 0.742 33 H 0.038 0.962 34 H 0.117 0.883 35 H 0.137 0.863 36 H 0.156 0.844 37 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.182 -9.113 -7.384 12.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.171 4.171 4 C 0.022 3.978 5 N -0.294 5.294 6 C -0.411 4.411 7 H 0.080 0.920 8 C -0.167 4.167 9 N -0.511 5.511 10 Si 0.711 3.289 11 H -0.199 1.199 12 H -0.203 1.203 13 H -0.215 1.215 14 C 0.055 3.945 15 C -0.138 4.138 16 C -0.076 4.076 17 C -0.243 4.243 18 Br 0.027 6.973 19 C -0.028 4.028 20 N -0.227 5.227 21 C 0.171 3.829 22 O -0.276 6.276 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.134 0.866 35 H 0.155 0.845 36 H 0.173 0.827 37 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 5.850 -8.491 -7.794 12.925 hybrid contribution -0.466 0.113 0.924 1.041 sum 5.383 -8.378 -6.869 12.098 Atomic orbital electron populations 1.21755 0.96761 1.00401 1.01688 1.21535 0.95147 0.98640 1.00837 1.22116 0.98805 0.93903 1.02279 1.20954 0.91664 0.87077 0.98077 1.43738 1.73285 1.10180 1.02213 1.19051 1.39343 0.92822 0.89904 0.91967 1.25185 0.95766 0.98754 0.97015 1.69868 1.32836 1.12568 1.35839 0.86592 0.79113 0.81296 0.81901 1.19881 1.20337 1.21462 1.19971 0.84244 1.03111 0.87196 1.22508 1.02286 0.94059 0.94980 1.21386 0.93869 0.96363 0.95952 1.22776 0.97082 1.03195 1.01263 1.96620 1.91905 1.59038 1.49730 1.22262 0.98818 0.91100 0.90581 1.67323 1.21092 1.17226 1.17055 1.19227 0.86337 0.86774 0.90608 1.84711 1.89837 1.33798 1.19208 0.92936 0.93098 0.93732 0.93004 0.92759 0.91741 0.92962 0.94969 0.94219 0.93154 0.94371 0.86553 0.84516 0.82654 0.73288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.12 -1.81 5.93 -26.73 -0.16 -1.97 16 3 C -0.13 -2.40 5.53 -26.73 -0.15 -2.55 16 4 C 0.15 2.86 5.67 -4.04 -0.02 2.84 16 5 N -0.58 -12.72 2.41 -174.61 -0.42 -13.14 16 6 C -0.28 -6.77 7.44 -15.06 -0.11 -6.88 16 7 H 0.06 1.51 7.90 -52.49 -0.41 1.10 16 8 C 0.04 0.89 3.89 -17.43 -0.07 0.82 16 9 N -0.87 -22.92 11.37 55.49 0.63 -22.29 16 10 Si 0.88 19.74 27.97 -169.99 -4.75 14.99 16 11 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 14 C 0.18 3.91 5.11 -5.20 -0.03 3.88 16 15 C -0.13 -2.56 5.49 -104.32 -0.57 -3.13 16 16 C -0.05 -0.80 9.57 -39.28 -0.38 -1.17 16 17 C -0.16 -2.48 6.24 -39.38 -0.25 -2.73 16 18 Br -0.06 -0.71 33.73 -68.01 -2.29 -3.01 16 19 C 0.13 2.11 10.94 -17.53 -0.19 1.91 16 20 N -0.51 -9.68 10.39 -13.31 -0.14 -9.82 16 21 C 0.35 7.19 7.72 -17.13 -0.13 7.06 16 22 O -0.46 -10.20 10.81 -18.80 -0.20 -10.40 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.03 0.58 8.05 -51.93 -0.42 0.16 16 31 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.04 0.78 7.93 -51.93 -0.41 0.36 16 34 H 0.12 2.90 5.35 -51.93 -0.28 2.63 16 35 H 0.14 2.04 8.05 -52.49 -0.42 1.62 16 36 H 0.16 2.03 8.06 -52.48 -0.42 1.60 16 37 H 0.40 8.50 6.04 45.56 0.28 8.77 16 LS Contribution 326.17 15.07 4.92 4.92 Total: -1.00 -25.75 326.17 -8.56 -34.31 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -4.60 Total: 7.95 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -1.69 Total: -3.51 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.07 Total: -45.25 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.20 Total: -10.40 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.75 Total: 14.99 kcal Atomic # 35 Polarization: -0.71 SS G_CDS: -2.29 Total: -3.01 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -25.75 -8.56 -34.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233187792.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.779 kcal (2) G-P(sol) polarization free energy of solvation -25.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds