Wall clock time and date at job start Tue Mar 31 2020 15:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46888 * 2 1 4 4 C 1.53004 * 109.46888 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47304 * 179.97438 * 4 3 2 6 6 C 1.36937 * 119.99661 * 86.65345 * 5 4 3 7 7 H 1.08002 * 120.00136 * 38.75114 * 6 5 4 8 8 C 1.38812 * 119.99964 * 218.46378 * 6 5 4 9 9 N 1.31618 * 120.00147 * 18.87136 * 8 6 5 10 10 Si 1.86804 * 120.00130 * 198.87371 * 8 6 5 11 11 H 1.48502 * 109.46894 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47104 * 119.99850 * 10 8 6 13 13 H 1.48495 * 109.47084 * 240.00017 * 10 8 6 14 14 C 1.46498 * 120.00047 * 266.65946 * 5 4 3 15 15 C 1.50695 * 109.46976 * 269.99485 * 14 5 4 16 16 C 1.38424 * 120.43404 * 104.72691 * 15 14 5 17 17 C 1.38856 * 118.47389 * 179.75644 * 16 15 14 18 18 Br 1.89099 * 120.36611 * 180.21669 * 17 16 15 19 19 C 1.38175 * 119.26791 * 0.51466 * 17 16 15 20 20 N 1.31931 * 120.82007 * 359.74646 * 19 17 16 21 21 C 1.32263 * 121.65787 * 359.97438 * 20 19 17 22 22 O 1.35699 * 119.67529 * 180.02562 * 21 20 19 23 23 H 1.08994 * 109.46989 * 300.00116 * 1 2 3 24 24 H 1.09001 * 109.47075 * 60.00307 * 1 2 3 25 25 H 1.09003 * 109.46990 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46688 * 240.00402 * 2 1 3 27 27 H 1.08996 * 109.46940 * 120.00143 * 2 1 3 28 28 H 1.08994 * 109.47400 * 60.00135 * 3 2 1 29 29 H 1.08996 * 109.47447 * 299.99833 * 3 2 1 30 30 H 1.09002 * 109.47426 * 60.00308 * 4 3 2 31 31 H 1.09001 * 109.47075 * 299.99693 * 4 3 2 32 32 H 0.97001 * 120.00152 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.47047 * 29.99913 * 14 5 4 34 34 H 1.09003 * 109.46767 * 150.00001 * 14 5 4 35 35 H 1.07999 * 120.76200 * 0.02562 * 16 15 14 36 36 H 1.08004 * 119.58896 * 179.72021 * 19 17 16 37 37 H 0.96699 * 114.00152 * 270.02387 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2208 3.4929 1.1836 7 1 4.6051 2.9738 2.0492 8 6 3.8973 4.8401 1.2693 9 7 3.1067 5.3856 0.3694 10 14 4.5839 5.8789 2.6618 11 1 5.4393 5.0345 3.5339 12 1 5.3937 6.9889 2.0984 13 1 3.4641 6.4388 3.4603 14 6 4.3728 3.4889 -1.2668 15 6 5.8178 3.2443 -1.6174 16 6 6.1552 2.3400 -2.6096 17 6 7.4991 2.1499 -2.9031 18 35 8.0199 0.9321 -4.2527 19 6 8.4518 2.8559 -2.1938 20 7 8.0985 3.7072 -1.2497 21 6 6.8288 3.9190 -0.9457 22 8 6.5108 4.8042 0.0324 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8899 30 1 3.9338 0.9286 -0.8891 31 1 3.9330 0.9288 0.8909 32 1 2.8803 6.3269 0.4295 33 1 3.7349 3.0893 -2.0551 34 1 4.1995 4.5604 -1.1673 35 1 5.3906 1.7979 -3.1462 36 1 9.4987 2.7088 -2.4146 37 1 6.4541 4.4121 0.9145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233187792.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:03 Heat of formation + Delta-G solvation = -11.160277 kcal Electronic energy + Delta-G solvation = -20649.186269 eV Core-core repulsion = 17472.748400 eV Total energy + Delta-G solvation = -3176.437869 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.49562 -38.22019 -37.69158 -35.57548 -34.09525 -33.41047 -32.55697 -30.11122 -29.32913 -27.60527 -25.63582 -24.30975 -23.45429 -22.17714 -21.50149 -19.67435 -18.64642 -18.02885 -17.15754 -16.66328 -16.29577 -15.89155 -15.44749 -15.39345 -15.09290 -14.60916 -14.24755 -14.20934 -13.76889 -13.45001 -13.18745 -13.10773 -12.72695 -12.69856 -12.48542 -12.16925 -12.10656 -11.95620 -11.84249 -11.79813 -11.57906 -11.36538 -11.23672 -10.63360 -10.54948 -10.35328 -9.57027 -8.55262 -7.82638 -5.44789 -0.17132 0.19315 0.49962 1.44413 1.51760 1.57397 2.42172 2.53745 2.92422 3.30850 3.69604 3.78357 3.84485 3.98876 4.17087 4.20692 4.32487 4.47006 4.60140 4.63609 4.76412 4.85862 4.91578 5.05808 5.09461 5.11371 5.19073 5.23699 5.39204 5.44009 5.56644 5.66459 5.66594 5.82412 6.48536 6.65507 6.89003 7.17895 7.85057 8.40200 9.15081 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.005103 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.042146 B = 5485.252286 C = 7593.882196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.120 4.120 4 C 0.147 3.853 5 N -0.588 5.588 6 C -0.273 4.273 7 H 0.058 0.942 8 C 0.002 3.998 9 N -0.902 5.902 10 Si 0.929 3.071 11 H -0.259 1.259 12 H -0.290 1.290 13 H -0.297 1.297 14 C 0.191 3.809 15 C -0.146 4.146 16 C -0.037 4.037 17 C -0.157 4.157 18 Br -0.018 7.018 19 C 0.136 3.864 20 N -0.523 5.523 21 C 0.323 3.677 22 O -0.482 6.482 23 H 0.043 0.957 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.031 0.969 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.250 0.750 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.158 0.842 36 H 0.189 0.811 37 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.316 -11.585 -8.680 15.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.160 4.160 4 C 0.022 3.978 5 N -0.307 5.307 6 C -0.403 4.403 7 H 0.076 0.924 8 C -0.198 4.198 9 N -0.545 5.545 10 Si 0.757 3.243 11 H -0.183 1.183 12 H -0.217 1.217 13 H -0.225 1.225 14 C 0.064 3.936 15 C -0.153 4.153 16 C -0.065 4.065 17 C -0.239 4.239 18 Br 0.067 6.933 19 C -0.023 4.023 20 N -0.243 5.243 21 C 0.145 3.855 22 O -0.292 6.292 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.175 0.825 36 H 0.206 0.794 37 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 6.998 -10.991 -9.093 15.889 hybrid contribution -0.699 0.737 1.165 1.546 sum 6.299 -10.254 -7.928 14.411 Atomic orbital electron populations 1.21739 0.95675 1.01837 1.01215 1.21467 0.96092 0.95855 1.01976 1.21949 0.98120 0.96095 0.99806 1.21048 0.92165 0.85716 0.98886 1.43900 1.73964 1.10992 1.01861 1.19126 1.37843 0.92871 0.90445 0.92443 1.25575 0.96258 0.99571 0.98360 1.69988 1.34786 1.12117 1.37562 0.85855 0.78198 0.79951 0.80265 1.18324 1.21682 1.22475 1.19662 0.85869 1.00994 0.87108 1.22219 1.00677 0.95682 0.96710 1.21572 0.95175 0.95034 0.94672 1.22921 0.96369 1.03104 1.01462 1.96675 1.91522 1.57387 1.47752 1.22864 1.00522 0.89642 0.89260 1.67312 1.20373 1.18255 1.18354 1.19366 0.87262 0.87839 0.91033 1.84692 1.90177 1.34834 1.19495 0.93804 0.93281 0.91295 0.91315 0.92058 0.95048 0.94549 0.93040 0.94293 0.93999 0.93734 0.90131 0.82476 0.79392 0.73686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.91 71.98 0.71 -2.93 16 2 C -0.12 -3.17 5.93 30.59 0.18 -2.99 16 3 C -0.12 -4.36 5.53 30.59 0.17 -4.19 16 4 C 0.15 5.58 5.67 86.38 0.49 6.07 16 5 N -0.59 -26.28 2.41 -706.33 -1.70 -27.98 16 6 C -0.27 -13.39 7.44 84.03 0.62 -12.76 16 7 H 0.06 2.84 7.90 -2.91 -0.02 2.81 16 8 C 0.00 0.12 3.89 84.86 0.33 0.45 16 9 N -0.90 -49.48 11.37 21.65 0.25 -49.24 16 10 Si 0.93 41.92 27.97 68.60 1.92 43.84 16 11 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 12 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 13 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 14 C 0.19 8.32 5.11 85.63 0.44 8.76 16 15 C -0.15 -5.63 5.49 -19.67 -0.11 -5.74 16 16 C -0.04 -1.14 9.57 22.46 0.21 -0.93 16 17 C -0.16 -4.34 6.24 22.40 0.14 -4.20 16 18 Br -0.02 -0.37 33.73 -20.37 -0.69 -1.06 16 19 C 0.14 4.00 10.94 84.66 0.93 4.93 16 20 N -0.52 -19.41 10.39 -308.86 -3.21 -22.62 16 21 C 0.32 13.33 7.72 84.78 0.65 13.98 16 22 O -0.48 -21.78 10.81 -90.19 -0.97 -22.75 16 23 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.74 8.05 -2.39 -0.02 1.72 16 31 H 0.04 1.47 8.07 -2.39 -0.02 1.45 16 32 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 33 H 0.04 1.82 7.93 -2.39 -0.02 1.80 16 34 H 0.08 4.19 5.35 -2.39 -0.01 4.18 16 35 H 0.16 4.19 8.05 -2.91 -0.02 4.16 16 36 H 0.19 4.18 8.06 -2.91 -0.02 4.16 16 37 H 0.40 17.48 6.04 -74.06 -0.45 17.03 16 Total: -1.00 -56.75 326.17 0.99 -55.75 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.63 Total: 23.61 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 4.77 Total: 0.45 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -4.66 Total: -99.83 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.97 Total: -22.75 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.92 Total: 43.84 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -0.69 Total: -1.06 kcal Total: -56.75 0.99 -55.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233187792.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.592 kcal (2) G-P(sol) polarization free energy of solvation -56.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds