Wall clock time and date at job start Tue Mar 31 2020 14:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86801 * 120.00115 * 2 1 4 4 H 1.48496 * 109.47260 * 270.00310 * 3 2 1 5 5 H 1.48502 * 109.46840 * 30.00147 * 3 2 1 6 6 H 1.48498 * 109.47401 * 149.99641 * 3 2 1 7 7 C 1.38635 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00407 * 179.97438 * 7 2 1 9 9 O 1.34814 * 119.99698 * 0.02562 * 7 2 1 10 10 C 1.35680 * 117.00102 * 185.06333 * 9 7 2 11 11 C 1.38694 * 120.12073 * 354.39477 * 10 9 7 12 12 C 1.38338 * 120.02909 * 180.27684 * 11 10 9 13 13 F 1.35097 * 119.86711 * 179.73803 * 12 11 10 14 14 C 1.38674 * 120.27514 * 359.72591 * 12 11 10 15 15 C 1.37979 * 120.24052 * 359.97006 * 14 12 11 16 16 C 1.39306 * 119.97198 * 0.02731 * 15 14 12 17 17 C 1.48244 * 120.13746 * 179.97438 * 16 15 14 18 18 C 1.39629 * 120.10239 * 90.00363 * 17 16 15 19 19 F 1.35101 * 120.01390 * 0.02562 * 18 17 16 20 20 C 1.38183 * 119.95996 * 180.02562 * 18 17 16 21 21 C 1.38488 * 120.17634 * 359.97438 * 20 18 17 22 22 F 1.35095 * 119.89617 * 179.97438 * 21 20 18 23 23 C 1.38883 * 120.20953 * 0.02562 * 21 20 18 24 24 O 1.36059 * 119.98435 * 179.97438 * 23 21 20 25 25 C 1.38616 * 120.03630 * 359.72542 * 23 21 20 26 26 F 1.35098 * 120.08523 * 180.30179 * 25 23 21 27 27 H 0.96997 * 119.99927 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.98874 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.87945 * 179.97438 * 14 12 11 30 30 H 1.08003 * 120.01622 * 180.02562 * 15 14 12 31 31 H 1.07997 * 119.91052 * 180.02562 * 20 18 17 32 32 H 0.96695 * 114.00282 * 90.00246 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0465 -1.4000 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4402 0.7001 7 6 2.0090 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3349 -2.3681 0.0005 10 6 2.0698 -3.5036 0.1078 11 6 3.4552 -3.4400 0.0941 12 6 4.2025 -4.5995 0.1978 13 9 5.5518 -4.5342 0.1789 14 6 3.5725 -5.8286 0.3214 15 6 2.1949 -5.9044 0.3425 16 6 1.4324 -4.7432 0.2389 17 6 -0.0479 -4.8204 0.2606 18 6 -0.7355 -4.7418 1.4733 19 9 -0.0521 -4.5947 2.6294 20 6 -2.1153 -4.8146 1.4901 21 6 -2.8190 -4.9649 0.3068 22 9 -4.1679 -5.0360 0.3299 23 6 -2.1423 -5.0439 -0.9034 24 8 -2.8382 -5.1920 -2.0632 25 6 -0.7586 -4.9666 -0.9310 26 9 -0.0997 -5.0372 -2.1083 27 1 -0.4850 0.8400 0.0004 28 1 3.9508 -2.4853 -0.0024 29 1 4.1622 -6.7299 0.4015 30 1 1.7080 -6.8636 0.4394 31 1 -2.6464 -4.7533 2.4285 32 1 -3.0867 -4.3568 -2.4822 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235993873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:48 Heat of formation + Delta-G solvation = -194.169278 kcal Electronic energy + Delta-G solvation = -27745.371328 eV Core-core repulsion = 22944.415238 eV Total energy + Delta-G solvation = -4800.956090 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.051 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.01058 -48.75961 -48.73683 -48.42574 -39.52090 -38.79673 -36.86555 -36.22174 -32.54015 -31.84324 -29.62654 -29.40366 -27.93317 -25.60972 -23.49208 -22.92156 -22.05205 -21.20408 -18.68122 -18.43494 -18.29626 -17.92316 -17.54463 -16.49976 -15.94889 -15.82717 -15.60301 -15.47350 -15.33573 -15.12681 -15.09777 -15.04919 -14.57021 -14.35965 -14.33327 -13.72791 -13.58474 -13.44307 -13.15946 -12.79753 -12.49197 -12.27215 -11.84722 -11.52910 -11.31908 -11.24063 -10.89849 -10.83946 -10.74196 -10.57804 -9.78189 -9.04947 -8.68929 -8.46158 -8.27741 -7.58003 -6.67438 -4.27181 0.82446 0.90011 1.63242 2.01197 3.01906 3.03502 3.08275 3.11653 3.57002 3.78822 3.97689 4.13906 4.34577 4.35225 4.66793 4.70298 4.82849 4.91143 5.03896 5.38985 5.51578 5.60767 5.68240 5.81118 5.89277 5.93654 5.94320 6.26594 6.47319 6.64710 6.69451 6.81596 6.85521 7.11272 7.46290 7.46467 7.75278 8.77101 9.37917 10.48746 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009524 B = 0.005952 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.357087 B = 4703.459095 C = 6400.848537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.046 3.954 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.398 4.398 8 H 0.096 0.904 9 O -0.155 6.155 10 C 0.197 3.803 11 C -0.269 4.269 12 C 0.154 3.846 13 F -0.148 7.148 14 C -0.248 4.248 15 C -0.018 4.018 16 C -0.160 4.160 17 C -0.068 4.068 18 C 0.173 3.827 19 F -0.114 7.114 20 C -0.190 4.190 21 C 0.129 3.871 22 F -0.121 7.121 23 C 0.025 3.975 24 O -0.476 6.476 25 C 0.154 3.846 26 F -0.109 7.109 27 H 0.274 0.726 28 H 0.144 0.856 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.157 0.843 32 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.791 -8.152 0.765 8.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.160 4.160 3 Si 0.766 3.234 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.473 4.473 8 H 0.114 0.886 9 O -0.056 6.056 10 C 0.140 3.860 11 C -0.289 4.289 12 C 0.135 3.865 13 F -0.127 7.127 14 C -0.268 4.268 15 C -0.036 4.036 16 C -0.162 4.162 17 C -0.070 4.070 18 C 0.153 3.847 19 F -0.092 7.092 20 C -0.209 4.209 21 C 0.109 3.891 22 F -0.100 7.100 23 C -0.022 4.022 24 O -0.286 6.286 25 C 0.133 3.867 26 F -0.087 7.087 27 H 0.084 0.916 28 H 0.161 0.839 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.175 0.825 32 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -3.138 -8.493 0.845 9.093 hybrid contribution 0.670 1.492 -0.164 1.644 sum -2.468 -7.000 0.681 7.454 Atomic orbital electron populations 1.70025 1.06017 1.28198 1.44202 1.25323 0.95901 0.98962 0.95825 0.85678 0.79094 0.79602 0.78980 1.19616 1.20005 1.18915 1.21418 0.92060 0.80412 1.53443 0.88645 1.83967 1.34176 1.11410 1.76027 1.18871 0.89052 0.87317 0.90781 1.20978 0.93872 0.98516 1.15517 1.17540 0.75922 0.94328 0.98705 1.91430 1.30119 1.97371 1.93769 1.20436 0.94707 0.95958 1.15694 1.20475 0.92403 0.96135 0.94620 1.17307 0.89181 0.91797 1.17873 1.18413 0.94125 1.04233 0.90215 1.16917 0.88278 0.98068 0.81448 1.91559 1.79638 1.92261 1.45702 1.20814 0.92769 1.08375 0.98976 1.17150 0.77349 1.02027 0.92550 1.91520 1.27841 1.93431 1.97160 1.18023 0.88471 1.09385 0.86348 1.84902 1.73841 1.35183 1.34702 1.17391 0.88091 0.99697 0.81512 1.91546 1.80573 1.92807 1.43788 0.91644 0.83871 0.85745 0.85624 0.82520 0.74945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.27 13.67 55.48 0.76 -22.51 16 2 C 0.05 1.19 5.49 -17.52 -0.10 1.10 16 3 Si 0.94 19.50 29.55 -169.99 -5.02 14.48 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.40 -10.46 9.49 30.88 0.29 -10.17 16 8 H 0.10 2.34 5.21 -52.49 -0.27 2.07 16 9 O -0.15 -4.10 9.21 0.31 0.00 -4.10 16 10 C 0.20 4.50 6.65 -38.75 -0.26 4.25 16 11 C -0.27 -5.73 9.14 -39.38 -0.36 -6.09 16 12 C 0.15 2.94 7.29 -39.38 -0.29 2.65 16 13 F -0.15 -2.70 17.26 2.25 0.04 -2.66 16 14 C -0.25 -4.20 10.01 -39.52 -0.40 -4.60 16 15 C -0.02 -0.31 9.77 -39.28 -0.38 -0.69 16 16 C -0.16 -3.20 4.60 -104.73 -0.48 -3.68 16 17 C -0.07 -1.27 4.84 -104.79 -0.51 -1.78 16 18 C 0.17 2.99 7.27 -39.08 -0.28 2.71 16 19 F -0.11 -2.04 16.82 2.25 0.04 -2.01 16 20 C -0.19 -2.79 9.98 -39.51 -0.39 -3.18 16 21 C 0.13 1.94 7.31 -39.25 -0.29 1.66 16 22 F -0.12 -1.73 17.10 2.25 0.04 -1.69 16 23 C 0.02 0.40 6.71 -39.20 -0.26 0.13 16 24 O -0.48 -6.76 13.22 -19.93 -0.26 -7.03 16 25 C 0.15 2.76 7.28 -38.97 -0.28 2.47 16 26 F -0.11 -2.06 16.66 2.25 0.04 -2.02 16 27 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.14 3.05 5.64 -52.49 -0.30 2.76 16 29 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.13 1.75 8.06 -52.48 -0.42 1.32 16 31 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.39 4.00 9.06 45.56 0.41 4.41 16 LS Contribution 313.03 15.07 4.72 4.72 Total: -1.00 -29.15 313.03 -4.20 -33.35 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -0.56 Total: 4.69 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -3.99 Total: -15.23 kcal Atomic # 7 Polarization: -23.27 SS G_CDS: 0.76 Total: -22.51 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.26 Total: -11.12 kcal Atomic # 9 Polarization: -8.53 SS G_CDS: 0.15 Total: -8.38 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.15 -4.20 -33.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235993873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.816 kcal (2) G-P(sol) polarization free energy of solvation -29.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds