Wall clock time and date at job start Tue Mar 31 2020 14:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86801 * 120.00115 * 2 1 4 4 H 1.48496 * 109.47260 * 270.00310 * 3 2 1 5 5 H 1.48502 * 109.46840 * 30.00147 * 3 2 1 6 6 H 1.48498 * 109.47401 * 149.99641 * 3 2 1 7 7 C 1.38635 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00407 * 179.97438 * 7 2 1 9 9 O 1.34814 * 119.99698 * 0.02562 * 7 2 1 10 10 C 1.35680 * 117.00102 * 185.06333 * 9 7 2 11 11 C 1.38694 * 120.12073 * 354.39477 * 10 9 7 12 12 C 1.38338 * 120.02909 * 180.27684 * 11 10 9 13 13 F 1.35097 * 119.86711 * 179.73803 * 12 11 10 14 14 C 1.38674 * 120.27514 * 359.72591 * 12 11 10 15 15 C 1.37979 * 120.24052 * 359.97006 * 14 12 11 16 16 C 1.39306 * 119.97198 * 0.02731 * 15 14 12 17 17 C 1.48244 * 120.13746 * 179.97438 * 16 15 14 18 18 C 1.39629 * 120.10239 * 90.00363 * 17 16 15 19 19 F 1.35101 * 120.01390 * 0.02562 * 18 17 16 20 20 C 1.38183 * 119.95996 * 180.02562 * 18 17 16 21 21 C 1.38488 * 120.17634 * 359.97438 * 20 18 17 22 22 F 1.35095 * 119.89617 * 179.97438 * 21 20 18 23 23 C 1.38883 * 120.20953 * 0.02562 * 21 20 18 24 24 O 1.36059 * 119.98435 * 179.97438 * 23 21 20 25 25 C 1.38616 * 120.03630 * 359.72542 * 23 21 20 26 26 F 1.35098 * 120.08523 * 180.30179 * 25 23 21 27 27 H 0.96997 * 119.99927 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.98874 * 359.97438 * 11 10 9 29 29 H 1.08001 * 119.87945 * 179.97438 * 14 12 11 30 30 H 1.08003 * 120.01622 * 180.02562 * 15 14 12 31 31 H 1.07997 * 119.91052 * 180.02562 * 20 18 17 32 32 H 0.96695 * 114.00282 * 90.00246 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0465 -1.4000 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4402 0.7001 7 6 2.0090 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3349 -2.3681 0.0005 10 6 2.0698 -3.5036 0.1078 11 6 3.4552 -3.4400 0.0941 12 6 4.2025 -4.5995 0.1978 13 9 5.5518 -4.5342 0.1789 14 6 3.5725 -5.8286 0.3214 15 6 2.1949 -5.9044 0.3425 16 6 1.4324 -4.7432 0.2389 17 6 -0.0479 -4.8204 0.2606 18 6 -0.7355 -4.7418 1.4733 19 9 -0.0521 -4.5947 2.6294 20 6 -2.1153 -4.8146 1.4901 21 6 -2.8190 -4.9649 0.3068 22 9 -4.1679 -5.0360 0.3299 23 6 -2.1423 -5.0439 -0.9034 24 8 -2.8382 -5.1920 -2.0632 25 6 -0.7586 -4.9666 -0.9310 26 9 -0.0997 -5.0372 -2.1083 27 1 -0.4850 0.8400 0.0004 28 1 3.9508 -2.4853 -0.0024 29 1 4.1622 -6.7299 0.4015 30 1 1.7080 -6.8636 0.4394 31 1 -2.6464 -4.7533 2.4285 32 1 -3.0867 -4.3568 -2.4822 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235993873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:48 Heat of formation + Delta-G solvation = -211.584072 kcal Electronic energy + Delta-G solvation = -27746.126490 eV Core-core repulsion = 22944.415238 eV Total energy + Delta-G solvation = -4801.711252 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.051 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.20390 -50.15840 -50.11177 -49.92990 -41.07619 -40.15162 -38.35495 -37.60412 -34.38671 -33.26664 -31.14117 -30.75808 -29.38610 -27.45331 -24.87379 -24.22011 -23.66807 -22.66174 -20.18745 -19.95767 -19.61100 -19.23909 -19.15149 -17.84928 -17.30968 -17.17726 -17.14274 -16.99837 -16.76047 -16.63437 -16.46428 -16.41568 -16.00318 -15.86208 -15.57060 -15.45949 -15.22196 -14.98598 -14.47568 -14.16415 -13.99870 -13.66405 -13.51966 -13.01964 -12.89744 -12.58815 -12.43484 -12.32039 -12.16204 -11.99966 -11.57472 -10.87229 -9.99330 -9.83070 -9.75543 -9.21922 -8.54952 -6.23535 -0.47119 -0.39087 0.07861 0.45842 1.33826 1.41036 1.49504 1.82379 2.11024 2.29241 2.50053 2.82599 2.99097 3.04166 3.09184 3.14884 3.26411 3.46136 3.65362 3.91223 4.13962 4.19753 4.37013 4.42219 4.53845 4.59828 4.63618 4.78421 4.97198 5.06990 5.18476 5.25211 5.39384 5.44242 5.89599 5.93821 6.42448 6.88825 7.58488 8.65530 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009524 B = 0.005952 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.357087 B = 4703.459095 C = 6400.848537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.006 4.006 3 Si 1.010 2.990 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.422 4.422 8 H 0.100 0.900 9 O -0.198 6.198 10 C 0.168 3.832 11 C -0.284 4.284 12 C 0.148 3.852 13 F -0.142 7.142 14 C -0.219 4.219 15 C -0.014 4.014 16 C -0.161 4.161 17 C -0.086 4.086 18 C 0.157 3.843 19 F -0.122 7.122 20 C -0.170 4.170 21 C 0.134 3.866 22 F -0.113 7.113 23 C 0.036 3.964 24 O -0.480 6.480 25 C 0.133 3.867 26 F -0.121 7.121 27 H 0.276 0.724 28 H 0.132 0.868 29 H 0.167 0.833 30 H 0.166 0.834 31 H 0.189 0.811 32 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 -9.812 1.228 10.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.207 4.207 3 Si 0.830 3.170 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.498 4.498 8 H 0.117 0.883 9 O -0.102 6.102 10 C 0.115 3.885 11 C -0.304 4.304 12 C 0.128 3.872 13 F -0.121 7.121 14 C -0.238 4.238 15 C -0.032 4.032 16 C -0.163 4.163 17 C -0.089 4.089 18 C 0.137 3.863 19 F -0.100 7.100 20 C -0.189 4.189 21 C 0.114 3.886 22 F -0.091 7.091 23 C -0.012 4.012 24 O -0.292 6.292 25 C 0.113 3.887 26 F -0.099 7.099 27 H 0.085 0.915 28 H 0.150 0.850 29 H 0.184 0.816 30 H 0.184 0.816 31 H 0.206 0.794 32 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -2.974 -10.193 1.300 10.697 hybrid contribution 0.663 1.684 -0.318 1.837 sum -2.311 -8.509 0.981 8.872 Atomic orbital electron populations 1.70137 1.07637 1.29060 1.46953 1.26415 0.96807 1.02193 0.95253 0.84697 0.77968 0.75023 0.79319 1.18820 1.19269 1.18038 1.21794 0.92535 0.81231 1.54199 0.88293 1.83949 1.35085 1.12088 1.79070 1.19382 0.89840 0.87648 0.91646 1.21034 0.93789 0.99269 1.16347 1.17634 0.76174 0.94415 0.98937 1.91446 1.29550 1.97367 1.93707 1.20955 0.94942 0.96397 1.11553 1.20997 0.92514 0.96788 0.92905 1.17744 0.90525 0.91630 1.16386 1.18508 0.93733 1.05454 0.91165 1.17036 0.89196 0.99258 0.80816 1.91534 1.79984 1.92524 1.45953 1.21065 0.91717 1.05898 1.00234 1.17090 0.77647 1.01613 0.92233 1.91548 1.27149 1.93295 1.97096 1.18023 0.87875 1.07990 0.87285 1.84849 1.73376 1.36713 1.34276 1.17521 0.88909 1.01336 0.80963 1.91505 1.80948 1.93154 1.44337 0.91518 0.84999 0.81572 0.81634 0.79359 0.72755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.41 13.67 21.61 0.30 -51.12 16 2 C -0.01 -0.34 5.49 84.83 0.47 0.12 16 3 Si 1.01 40.98 29.55 68.60 2.03 43.01 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.42 -23.30 9.49 67.91 0.64 -22.66 16 8 H 0.10 5.12 5.21 -2.91 -0.02 5.10 16 9 O -0.20 -11.02 9.21 -21.80 -0.20 -11.22 16 10 C 0.17 7.94 6.65 22.81 0.15 8.09 16 11 C -0.28 -12.36 9.14 22.40 0.20 -12.16 16 12 C 0.15 5.40 7.29 22.40 0.16 5.57 16 13 F -0.14 -4.92 17.26 44.97 0.78 -4.14 16 14 C -0.22 -6.68 10.01 22.31 0.22 -6.46 16 15 C -0.01 -0.45 9.77 22.47 0.22 -0.23 16 16 C -0.16 -6.41 4.60 -19.93 -0.09 -6.50 16 17 C -0.09 -3.23 4.84 -19.97 -0.10 -3.32 16 18 C 0.16 5.32 7.27 22.59 0.16 5.48 16 19 F -0.12 -4.34 16.82 44.97 0.76 -3.58 16 20 C -0.17 -4.69 9.98 22.32 0.22 -4.46 16 21 C 0.13 3.78 7.31 22.48 0.16 3.95 16 22 F -0.11 -2.94 17.10 44.97 0.77 -2.17 16 23 C 0.04 1.10 6.71 22.51 0.15 1.25 16 24 O -0.48 -12.93 13.22 -94.22 -1.25 -14.18 16 25 C 0.13 4.76 7.28 22.67 0.17 4.92 16 26 F -0.12 -4.62 16.66 44.97 0.75 -3.87 16 27 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.13 5.90 5.64 -2.91 -0.02 5.88 16 29 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 30 H 0.17 3.90 8.06 -2.91 -0.02 3.88 16 31 H 0.19 3.91 8.06 -2.91 -0.02 3.88 16 32 H 0.41 7.85 9.06 -74.06 -0.67 7.18 16 Total: -1.00 -66.03 313.03 7.26 -58.77 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.58 Total: 14.91 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 2.75 Total: -26.41 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.30 Total: -51.12 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -1.45 Total: -25.39 kcal Atomic # 9 Polarization: -16.82 SS G_CDS: 3.05 Total: -13.77 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -66.03 7.26 -58.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235993873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.811 kcal (2) G-P(sol) polarization free energy of solvation -66.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds