Wall clock time and date at job start Tue Mar 31 2020 14:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47090 * 33.91978 * 3 2 1 5 5 N 1.46904 * 109.46919 * 174.86560 * 4 3 2 6 6 C 1.46901 * 111.00036 * 199.77856 * 5 4 3 7 7 C 1.50698 * 109.47033 * 66.04857 * 6 5 4 8 8 H 1.07992 * 119.99944 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99725 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00065 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99897 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47343 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47359 * 119.99724 * 11 9 7 14 14 H 1.48505 * 109.47328 * 239.99848 * 11 9 7 15 15 C 1.46906 * 110.99922 * 75.82662 * 5 4 3 16 16 C 1.50700 * 109.47144 * 199.45839 * 15 5 4 17 17 C 1.38175 * 120.00781 * 254.86603 * 16 15 5 18 18 C 1.38317 * 120.05685 * 179.97438 * 17 16 15 19 19 Cl 1.73597 * 119.96310 * 180.02562 * 18 17 16 20 20 C 1.38501 * 120.06927 * 359.97438 * 18 17 16 21 21 Cl 1.73599 * 119.98890 * 179.97438 * 20 18 17 22 22 C 1.38234 * 120.02176 * 0.02562 * 20 18 17 23 23 C 1.38705 * 120.00922 * 74.59932 * 16 15 5 24 24 O 1.35922 * 120.03523 * 359.97438 * 23 16 15 25 25 H 1.08996 * 109.46806 * 273.91912 * 3 2 1 26 26 H 1.08997 * 109.46577 * 153.92063 * 3 2 1 27 27 H 1.09000 * 109.47640 * 54.87159 * 4 3 2 28 28 H 1.09001 * 109.47216 * 294.86440 * 4 3 2 29 29 H 1.09007 * 109.46817 * 186.05082 * 6 5 4 30 30 H 1.08997 * 109.46799 * 306.04477 * 6 5 4 31 31 H 0.97002 * 119.99699 * 179.97438 * 10 9 7 32 32 H 1.08995 * 109.47234 * 79.45096 * 15 5 4 33 33 H 1.09003 * 109.46910 * 319.45924 * 15 5 4 34 34 H 1.08001 * 119.96919 * 0.03267 * 17 16 15 35 35 H 1.07998 * 120.02842 * 179.97438 * 22 20 18 36 36 H 0.96706 * 113.99810 * 90.00896 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1186 -1.1961 -0.8049 5 7 4.5823 -1.1278 -0.9088 6 6 5.0698 -1.9488 -2.0252 7 6 4.5902 -1.3614 -3.3275 8 1 3.9843 -0.4675 -3.3260 9 6 4.9259 -1.9648 -4.5209 10 7 5.6650 -3.0526 -4.5227 11 14 4.3320 -1.2364 -6.1352 12 1 3.5236 -0.0210 -5.8623 13 1 5.5020 -0.8748 -6.9753 14 1 3.4979 -2.2345 -6.8516 15 6 5.2189 -1.5252 0.3541 16 6 6.6329 -1.0055 0.3894 17 6 7.6923 -1.8708 0.1937 18 6 8.9906 -1.3947 0.2252 19 17 10.3196 -2.4838 -0.0216 20 6 9.2312 -0.0498 0.4525 21 17 10.8615 0.5453 0.4924 22 6 8.1737 0.8185 0.6487 23 6 6.8712 0.3426 0.6127 24 8 5.8297 1.1957 0.7994 25 1 2.9714 -0.0694 1.0252 26 1 2.9709 0.9239 -0.4518 27 1 2.6822 -1.1752 -1.8036 28 1 2.8327 -2.1203 -0.3027 29 1 6.1597 -1.9668 -2.0141 30 1 4.6886 -2.9647 -1.9225 31 1 5.9008 -3.4773 -5.3623 32 1 5.2293 -2.6125 0.4293 33 1 4.6577 -1.1087 1.1907 34 1 7.5063 -2.9195 0.0150 35 1 8.3613 1.8672 0.8264 36 1 5.5615 1.2927 1.7235 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236799932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:46 Heat of formation + Delta-G solvation = -2.581300 kcal Electronic energy + Delta-G solvation = -22925.889531 eV Core-core repulsion = 19269.127431 eV Total energy + Delta-G solvation = -3656.762101 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.06914 -37.53750 -37.20669 -36.49994 -36.17249 -35.69415 -32.75893 -32.06059 -30.41239 -29.65493 -27.26635 -25.16085 -23.23694 -22.82614 -21.80919 -20.11154 -18.42216 -17.30645 -16.74849 -16.44627 -16.30998 -15.63064 -15.03159 -14.62806 -14.59325 -14.29539 -13.78337 -13.65266 -13.58689 -13.23370 -12.89190 -12.60637 -12.35424 -12.08375 -11.98829 -11.83903 -11.82583 -11.36166 -11.10717 -11.04949 -10.95544 -10.88760 -10.72575 -10.64940 -10.49277 -10.32103 -9.94052 -9.26525 -8.85309 -8.49116 -8.37809 -7.47142 -6.07950 -4.09074 0.94349 1.09725 1.86206 2.23843 2.95269 3.00012 3.29263 3.34265 3.37741 3.41791 4.15047 4.21177 4.40668 4.62707 4.83572 4.98927 5.20668 5.28306 5.30425 5.32695 5.48453 5.59073 5.71598 5.78660 5.83461 5.89353 6.00941 6.23312 6.35739 6.49452 6.53604 7.11249 7.18707 7.65400 7.70355 7.77766 7.92831 8.04850 8.40603 8.98001 9.55732 11.02720 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009441 B = 0.004526 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.946495 B = 6184.835717 C = 8059.230369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.218 3.782 3 C -0.024 4.024 4 C 0.066 3.934 5 N -0.520 5.520 6 C 0.193 3.807 7 C -0.509 4.509 8 H 0.065 0.935 9 C 0.058 3.942 10 N -0.895 5.895 11 Si 0.893 3.107 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.093 3.907 16 C -0.070 4.070 17 C -0.071 4.071 18 C -0.038 4.038 19 Cl -0.054 7.054 20 C -0.020 4.020 21 Cl -0.057 7.057 22 C -0.134 4.134 23 C 0.151 3.849 24 O -0.472 6.472 25 H 0.097 0.903 26 H 0.120 0.880 27 H 0.097 0.903 28 H 0.030 0.970 29 H 0.036 0.964 30 H -0.007 1.007 31 H 0.261 0.739 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.996 4.900 15.214 17.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.100 4.100 3 C -0.064 4.064 4 C -0.064 4.064 5 N -0.244 5.244 6 C 0.068 3.932 7 C -0.547 4.547 8 H 0.083 0.917 9 C -0.144 4.144 10 N -0.535 5.535 11 Si 0.721 3.279 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.212 1.212 15 C -0.035 4.035 16 C -0.072 4.072 17 C -0.090 4.090 18 C -0.066 4.066 19 Cl -0.025 7.025 20 C -0.048 4.048 21 Cl -0.028 7.028 22 C -0.153 4.153 23 C 0.105 3.895 24 O -0.281 6.281 25 H 0.115 0.885 26 H 0.138 0.862 27 H 0.115 0.885 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.011 0.989 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 5.789 5.271 14.354 16.350 hybrid contribution 0.365 -0.609 -0.499 0.868 sum 6.153 4.662 13.854 15.860 Atomic orbital electron populations 1.81169 1.13336 1.09437 1.09562 1.29444 0.95512 0.92545 0.92495 1.19402 0.80204 1.03709 1.03119 1.21888 0.89741 0.93474 1.01267 1.62036 1.03240 1.56682 1.02481 1.19810 0.96285 0.90066 0.87039 1.21143 1.32468 1.11165 0.89958 0.91657 1.24947 0.95215 0.94962 0.99230 1.69950 1.37318 1.19426 1.26769 0.86510 0.78558 0.79175 0.83625 1.19599 1.21009 1.21157 1.20928 0.90212 0.97664 0.94680 1.20241 0.96166 0.92335 0.98427 1.20898 0.89067 1.01269 0.97778 1.20659 0.90035 0.89547 1.06363 1.98377 1.45987 1.63090 1.95094 1.20439 0.86810 0.91835 1.05678 1.98372 1.19449 1.88125 1.96839 1.21189 0.90592 1.00212 1.03311 1.17974 0.85895 0.87770 0.97907 1.84975 1.48681 1.63587 1.30830 0.88452 0.86233 0.88458 0.95137 0.94604 0.98947 0.92939 0.94014 0.90539 0.83738 0.83815 0.76053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.49 18.54 42.15 0.78 -6.71 16 2 C 0.22 2.99 15.43 -20.76 -0.32 2.67 16 3 C -0.02 -0.27 5.75 -29.52 -0.17 -0.44 16 4 C 0.07 1.01 4.75 -3.82 -0.02 0.99 16 5 N -0.52 -8.97 4.35 -237.51 -1.03 -10.00 16 6 C 0.19 4.41 4.55 -4.98 -0.02 4.39 16 7 C -0.51 -13.19 8.23 -34.44 -0.28 -13.48 16 8 H 0.07 1.68 7.31 -52.49 -0.38 1.30 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -25.45 13.29 55.43 0.74 -24.71 16 11 Si 0.89 21.12 29.54 -169.99 -5.02 16.09 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.09 1.26 4.55 -4.97 -0.02 1.23 16 16 C -0.07 -0.96 4.82 -104.47 -0.50 -1.46 16 17 C -0.07 -1.00 8.77 -39.58 -0.35 -1.35 16 18 C -0.04 -0.54 6.32 -39.46 -0.25 -0.79 16 19 Cl -0.05 -0.74 27.95 -51.86 -1.45 -2.19 16 20 C -0.02 -0.26 6.32 -39.49 -0.25 -0.51 16 21 Cl -0.06 -0.69 27.95 -51.86 -1.45 -2.14 16 22 C -0.13 -1.61 9.77 -39.40 -0.38 -2.00 16 23 C 0.15 1.86 6.68 -39.23 -0.26 1.60 16 24 O -0.47 -4.89 12.84 -19.50 -0.25 -5.14 16 25 H 0.10 0.81 6.90 -51.93 -0.36 0.45 16 26 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.10 1.78 6.57 -51.93 -0.34 1.44 16 28 H 0.03 0.44 8.00 -51.93 -0.42 0.03 16 29 H 0.04 0.90 6.87 -51.92 -0.36 0.54 16 30 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.04 0.57 7.81 -51.93 -0.41 0.17 16 33 H 0.08 0.77 6.44 -51.93 -0.33 0.43 16 34 H 0.14 2.01 8.00 -52.49 -0.42 1.59 16 35 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.38 1.85 9.06 45.56 0.41 2.27 16 LS Contribution 346.76 15.07 5.23 5.23 Total: -1.00 -31.08 346.76 -8.39 -39.47 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -3.00 Total: -2.24 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -2.93 Total: -7.66 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.49 Total: -41.43 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.25 Total: -5.14 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -2.90 Total: -4.33 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.08 -8.39 -39.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236799932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.891 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds