Wall clock time and date at job start Tue Mar 31 2020 14:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47090 * 33.91978 * 3 2 1 5 5 N 1.46904 * 109.46919 * 174.86560 * 4 3 2 6 6 C 1.46901 * 111.00036 * 199.77856 * 5 4 3 7 7 C 1.50698 * 109.47033 * 66.04857 * 6 5 4 8 8 H 1.07992 * 119.99944 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99725 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00065 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99897 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47343 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47359 * 119.99724 * 11 9 7 14 14 H 1.48505 * 109.47328 * 239.99848 * 11 9 7 15 15 C 1.46906 * 110.99922 * 75.82662 * 5 4 3 16 16 C 1.50700 * 109.47144 * 199.45839 * 15 5 4 17 17 C 1.38175 * 120.00781 * 254.86603 * 16 15 5 18 18 C 1.38317 * 120.05685 * 179.97438 * 17 16 15 19 19 Cl 1.73597 * 119.96310 * 180.02562 * 18 17 16 20 20 C 1.38501 * 120.06927 * 359.97438 * 18 17 16 21 21 Cl 1.73599 * 119.98890 * 179.97438 * 20 18 17 22 22 C 1.38234 * 120.02176 * 0.02562 * 20 18 17 23 23 C 1.38705 * 120.00922 * 74.59932 * 16 15 5 24 24 O 1.35922 * 120.03523 * 359.97438 * 23 16 15 25 25 H 1.08996 * 109.46806 * 273.91912 * 3 2 1 26 26 H 1.08997 * 109.46577 * 153.92063 * 3 2 1 27 27 H 1.09000 * 109.47640 * 54.87159 * 4 3 2 28 28 H 1.09001 * 109.47216 * 294.86440 * 4 3 2 29 29 H 1.09007 * 109.46817 * 186.05082 * 6 5 4 30 30 H 1.08997 * 109.46799 * 306.04477 * 6 5 4 31 31 H 0.97002 * 119.99699 * 179.97438 * 10 9 7 32 32 H 1.08995 * 109.47234 * 79.45096 * 15 5 4 33 33 H 1.09003 * 109.46910 * 319.45924 * 15 5 4 34 34 H 1.08001 * 119.96919 * 0.03267 * 17 16 15 35 35 H 1.07998 * 120.02842 * 179.97438 * 22 20 18 36 36 H 0.96706 * 113.99810 * 90.00896 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1186 -1.1961 -0.8049 5 7 4.5823 -1.1278 -0.9088 6 6 5.0698 -1.9488 -2.0252 7 6 4.5902 -1.3614 -3.3275 8 1 3.9843 -0.4675 -3.3260 9 6 4.9259 -1.9648 -4.5209 10 7 5.6650 -3.0526 -4.5227 11 14 4.3320 -1.2364 -6.1352 12 1 3.5236 -0.0210 -5.8623 13 1 5.5020 -0.8748 -6.9753 14 1 3.4979 -2.2345 -6.8516 15 6 5.2189 -1.5252 0.3541 16 6 6.6329 -1.0055 0.3894 17 6 7.6923 -1.8708 0.1937 18 6 8.9906 -1.3947 0.2252 19 17 10.3196 -2.4838 -0.0216 20 6 9.2312 -0.0498 0.4525 21 17 10.8615 0.5453 0.4924 22 6 8.1737 0.8185 0.6487 23 6 6.8712 0.3426 0.6127 24 8 5.8297 1.1957 0.7994 25 1 2.9714 -0.0694 1.0252 26 1 2.9709 0.9239 -0.4518 27 1 2.6822 -1.1752 -1.8036 28 1 2.8327 -2.1203 -0.3027 29 1 6.1597 -1.9668 -2.0141 30 1 4.6886 -2.9647 -1.9225 31 1 5.9008 -3.4773 -5.3623 32 1 5.2293 -2.6125 0.4293 33 1 4.6577 -1.1087 1.1907 34 1 7.5063 -2.9195 0.0150 35 1 8.3613 1.8672 0.8264 36 1 5.5615 1.2927 1.7235 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236799932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:45 Heat of formation + Delta-G solvation = -22.710356 kcal Electronic energy + Delta-G solvation = -22926.762392 eV Core-core repulsion = 19269.127431 eV Total energy + Delta-G solvation = -3657.634962 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.05329 -38.75800 -38.17469 -37.51017 -37.34042 -36.71110 -34.71068 -33.11292 -31.66021 -30.73085 -28.84949 -26.43608 -24.81911 -23.85691 -22.97421 -21.43250 -19.31973 -18.58391 -18.27863 -17.60311 -17.41017 -16.69199 -16.48608 -16.18488 -15.73836 -15.30455 -15.06569 -14.81180 -14.66611 -14.44809 -14.13464 -13.90478 -13.62678 -13.48620 -13.23741 -13.18488 -12.86352 -12.80932 -12.59316 -12.47091 -12.18669 -12.10144 -11.95333 -11.91905 -11.81022 -11.47679 -11.38100 -11.12648 -10.55237 -9.85766 -9.37620 -8.91634 -8.14075 -6.20337 -0.05450 0.10740 0.85514 1.22572 1.41043 1.44149 1.54551 1.84133 1.92550 2.34618 2.44857 3.08178 3.20859 3.33974 3.61808 3.76032 3.86178 4.19259 4.26107 4.29985 4.45192 4.56542 4.71386 4.79533 4.85071 4.88595 4.99485 5.13352 5.18494 5.35067 5.42114 5.44172 5.59144 5.74258 6.15414 6.39298 6.67008 6.74008 6.97134 7.06921 7.48498 8.96382 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009441 B = 0.004526 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.946495 B = 6184.835717 C = 8059.230369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.242 3.758 3 C -0.007 4.007 4 C 0.065 3.935 5 N -0.519 5.519 6 C 0.210 3.790 7 C -0.512 4.512 8 H 0.065 0.935 9 C 0.005 3.995 10 N -0.931 5.931 11 Si 0.951 3.049 12 H -0.263 1.263 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.093 3.907 16 C -0.086 4.086 17 C -0.083 4.083 18 C -0.055 4.055 19 Cl -0.060 7.060 20 C -0.025 4.025 21 Cl -0.051 7.051 22 C -0.133 4.133 23 C 0.165 3.835 24 O -0.476 6.476 25 H 0.144 0.856 26 H 0.129 0.871 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.012 0.988 30 H -0.036 1.036 31 H 0.260 0.740 32 H 0.036 0.964 33 H 0.122 0.878 34 H 0.135 0.865 35 H 0.166 0.834 36 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.538 6.978 16.646 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.075 4.075 3 C -0.047 4.047 4 C -0.064 4.064 5 N -0.243 5.243 6 C 0.083 3.917 7 C -0.550 4.550 8 H 0.084 0.916 9 C -0.193 4.193 10 N -0.572 5.572 11 Si 0.777 3.223 12 H -0.187 1.187 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.035 4.035 16 C -0.087 4.087 17 C -0.103 4.103 18 C -0.083 4.083 19 Cl -0.031 7.031 20 C -0.053 4.053 21 Cl -0.022 7.022 22 C -0.152 4.152 23 C 0.118 3.882 24 O -0.289 6.289 25 H 0.161 0.839 26 H 0.147 0.853 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.030 0.970 30 H -0.018 1.018 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.140 0.860 34 H 0.153 0.847 35 H 0.184 0.816 36 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 5.309 7.371 15.827 18.248 hybrid contribution 0.513 -1.225 -0.873 1.590 sum 5.822 6.145 14.954 17.184 Atomic orbital electron populations 1.81204 1.14943 1.10949 1.11361 1.29745 0.95690 0.91095 0.90935 1.19394 0.78411 1.01890 1.04987 1.21832 0.88404 0.95904 1.00301 1.61879 1.04427 1.55229 1.02753 1.19371 0.94614 0.89222 0.88451 1.21532 1.31434 1.10736 0.91321 0.91641 1.25718 0.95648 0.95429 1.02487 1.70067 1.38965 1.20878 1.27335 0.85605 0.78013 0.78661 0.80010 1.18682 1.21049 1.21057 1.21074 0.90618 0.97820 0.93944 1.20313 0.95857 0.93093 0.99463 1.20933 0.89712 1.01222 0.98428 1.20759 0.89895 0.90088 1.07550 1.98366 1.46151 1.63395 1.95215 1.20597 0.87568 0.91676 1.05446 1.98372 1.19075 1.87922 1.96789 1.21439 0.90148 1.01068 1.02558 1.17934 0.86528 0.87276 0.96440 1.84905 1.47756 1.62688 1.33529 0.83868 0.85346 0.91996 0.94346 0.97013 1.01841 0.93106 0.94606 0.85969 0.84713 0.81602 0.72725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -15.81 18.54 20.01 0.37 -15.44 16 2 C 0.24 6.01 15.43 89.44 1.38 7.39 16 3 C -0.01 -0.13 5.75 28.79 0.17 0.04 16 4 C 0.07 1.87 4.75 86.30 0.41 2.28 16 5 N -0.52 -17.11 4.35 -905.35 -3.94 -21.05 16 6 C 0.21 9.76 4.55 85.56 0.39 10.14 16 7 C -0.51 -26.73 8.23 25.60 0.21 -26.52 16 8 H 0.07 3.35 7.31 -2.91 -0.02 3.33 16 9 C 0.01 0.28 5.46 84.65 0.46 0.74 16 10 N -0.93 -54.24 13.29 21.45 0.28 -53.96 16 11 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 12 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 14 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 15 C 0.09 2.28 4.55 85.56 0.39 2.67 16 16 C -0.09 -2.19 4.82 -19.77 -0.10 -2.29 16 17 C -0.08 -2.37 8.77 22.27 0.20 -2.18 16 18 C -0.06 -1.54 6.32 22.35 0.14 -1.40 16 19 Cl -0.06 -1.66 27.95 -2.72 -0.08 -1.73 16 20 C -0.03 -0.63 6.32 22.33 0.14 -0.48 16 21 Cl -0.05 -1.17 27.95 -2.72 -0.08 -1.24 16 22 C -0.13 -2.86 9.77 22.38 0.22 -2.64 16 23 C 0.16 3.58 6.68 22.50 0.15 3.73 16 24 O -0.48 -7.64 12.84 -92.67 -1.19 -8.83 16 25 H 0.14 1.47 6.90 -2.39 -0.02 1.45 16 26 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.06 2.23 6.57 -2.39 -0.02 2.21 16 28 H 0.04 1.04 8.00 -2.39 -0.02 1.02 16 29 H 0.01 0.61 6.87 -2.38 -0.02 0.59 16 30 H -0.04 -1.86 8.12 -2.39 -0.02 -1.88 16 31 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 32 H 0.04 0.95 7.81 -2.39 -0.02 0.93 16 33 H 0.12 1.85 6.44 -2.39 -0.02 1.83 16 34 H 0.14 3.95 8.00 -2.91 -0.02 3.93 16 35 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 36 H 0.41 1.61 9.06 -74.05 -0.67 0.94 16 Total: -1.00 -69.33 346.76 2.03 -67.29 By element: Atomic # 1 Polarization: -2.58 SS G_CDS: 0.47 Total: -2.11 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 4.16 Total: -8.52 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -3.28 Total: -90.45 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -1.19 Total: -8.83 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 17 Polarization: -2.82 SS G_CDS: -0.15 Total: -2.98 kcal Total: -69.33 2.03 -67.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236799932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.582 kcal (2) G-P(sol) polarization free energy of solvation -69.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds