Wall clock time and date at job start Tue Mar 31 2020 14:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47118 * 138.02546 * 3 2 1 5 5 N 1.46899 * 109.47223 * 185.72574 * 4 3 2 6 6 C 1.46903 * 111.00090 * 164.54112 * 5 4 3 7 7 C 1.50696 * 109.46855 * 293.95318 * 6 5 4 8 8 H 1.08000 * 120.00403 * 0.02562 * 7 6 5 9 9 C 1.37885 * 120.00021 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99588 * 359.97438 * 9 7 6 11 11 Si 1.86790 * 120.00068 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47228 * 89.99735 * 11 9 7 13 13 H 1.48507 * 109.47230 * 209.99689 * 11 9 7 14 14 H 1.48499 * 109.47607 * 329.99637 * 11 9 7 15 15 C 1.46899 * 111.00097 * 288.49696 * 5 4 3 16 16 C 1.50699 * 109.47312 * 164.30732 * 15 5 4 17 17 C 1.38730 * 120.02633 * 96.68289 * 16 15 5 18 18 O 1.35920 * 120.03871 * 359.96244 * 17 16 15 19 19 C 1.38708 * 119.92516 * 179.97438 * 17 16 15 20 20 C 1.38176 * 119.98220 * 0.02562 * 19 17 16 21 21 C 1.38315 * 120.05386 * 359.97124 * 20 19 17 22 22 Cl 1.73610 * 119.96125 * 180.02562 * 21 20 19 23 23 C 1.38224 * 120.02957 * 276.40640 * 16 15 5 24 24 Cl 1.73605 * 119.98967 * 0.02562 * 23 16 15 25 25 H 1.09008 * 109.47123 * 18.03189 * 3 2 1 26 26 H 1.08998 * 109.47413 * 258.02888 * 3 2 1 27 27 H 1.09001 * 109.47134 * 65.73036 * 4 3 2 28 28 H 1.09003 * 109.47492 * 305.72395 * 4 3 2 29 29 H 1.08993 * 109.46894 * 53.95618 * 6 5 4 30 30 H 1.09003 * 109.46936 * 173.95465 * 6 5 4 31 31 H 0.97001 * 119.99700 * 180.02562 * 10 9 7 32 32 H 1.09001 * 109.46835 * 284.30852 * 15 5 4 33 33 H 1.08999 * 109.47551 * 44.30452 * 15 5 4 34 34 H 0.96696 * 114.00698 * 89.99271 * 18 17 16 35 35 H 1.08001 * 120.00834 * 180.02562 * 19 17 16 36 36 H 1.08002 * 119.97318 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1175 1.0733 -0.9647 5 7 4.5800 0.9833 -1.0690 6 6 5.0714 1.7283 -2.2358 7 6 4.5806 1.0665 -3.4976 8 1 3.9648 0.1812 -3.4386 9 6 4.9177 1.5911 -4.7273 10 7 5.6672 2.6694 -4.7990 11 14 4.3088 0.7711 -6.2912 12 1 2.9994 1.3548 -6.6786 13 1 5.2919 0.9934 -7.3819 14 1 4.1509 -0.6867 -6.0568 15 6 5.2255 1.4514 0.1647 16 6 6.6624 0.9974 0.1833 17 6 7.6675 1.8567 -0.2363 18 8 7.3572 3.1086 -0.6652 19 6 8.9893 1.4368 -0.2178 20 6 9.3034 0.1636 0.2178 21 6 8.3007 -0.6924 0.6359 22 17 8.6980 -2.2913 1.1833 23 6 6.9806 -0.2736 0.6238 24 17 5.7244 -1.3476 1.1552 25 1 2.9717 -0.9764 -0.3181 26 1 2.9712 0.2140 1.0053 27 1 2.8399 2.0591 -0.5915 28 1 2.6729 0.9185 -1.9479 29 1 4.7012 2.7526 -2.1951 30 1 6.1614 1.7355 -2.2296 31 1 5.9040 3.0388 -5.6642 32 1 5.1880 2.5401 0.2038 33 1 4.7029 1.0387 1.0275 34 1 7.3521 3.7746 0.0358 35 1 9.7729 2.1048 -0.5437 36 1 10.3326 -0.1633 0.2317 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237084837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:55 Heat of formation + Delta-G solvation = 0.793077 kcal Electronic energy + Delta-G solvation = -23330.407773 eV Core-core repulsion = 19673.791996 eV Total energy + Delta-G solvation = -3656.615777 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.07024 -37.43621 -37.21023 -36.41195 -35.99142 -35.73858 -32.71250 -32.06770 -30.36164 -29.49439 -27.26300 -25.21761 -23.13507 -22.65687 -21.84025 -20.01121 -18.37686 -17.35187 -16.73354 -16.46487 -16.15997 -15.58868 -14.98284 -14.68611 -14.59523 -14.28445 -13.76237 -13.64101 -13.43305 -13.04995 -12.78801 -12.54967 -12.29852 -12.05297 -12.00410 -11.82407 -11.66067 -11.42145 -11.02244 -10.99918 -10.97523 -10.74206 -10.61594 -10.57413 -10.41095 -10.29569 -9.87144 -9.18373 -8.70270 -8.44542 -8.38247 -7.40902 -5.99999 -4.01428 0.98399 1.11636 1.94484 2.32287 2.96865 3.00908 3.32806 3.36970 3.39711 3.43958 4.19959 4.24779 4.45108 4.62932 4.87081 5.10381 5.18721 5.28775 5.35393 5.37218 5.51418 5.53915 5.65852 5.79356 5.92536 6.00999 6.06731 6.27324 6.35819 6.48935 6.53408 7.23589 7.34843 7.75959 7.76316 7.79873 8.04903 8.13315 8.49244 9.05631 9.62210 11.09828 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.008986 B = 0.005439 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.166519 B = 5147.045707 C = 6716.723046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.219 3.781 3 C -0.029 4.029 4 C 0.068 3.932 5 N -0.523 5.523 6 C 0.197 3.803 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.059 3.941 10 N -0.892 5.892 11 Si 0.891 3.109 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.089 3.911 16 C -0.071 4.071 17 C 0.142 3.858 18 O -0.471 6.471 19 C -0.134 4.134 20 C -0.090 4.090 21 C -0.046 4.046 22 Cl -0.059 7.059 23 C 0.006 3.994 24 Cl -0.043 7.043 25 H 0.116 0.884 26 H 0.098 0.902 27 H 0.032 0.968 28 H 0.098 0.902 29 H -0.007 1.007 30 H 0.046 0.954 31 H 0.260 0.740 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.385 0.615 35 H 0.141 0.859 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.027 -2.747 15.065 17.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.099 4.099 3 C -0.070 4.070 4 C -0.062 4.062 5 N -0.247 5.247 6 C 0.073 3.927 7 C -0.550 4.550 8 H 0.081 0.919 9 C -0.143 4.143 10 N -0.531 5.531 11 Si 0.719 3.281 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.039 4.039 16 C -0.073 4.073 17 C 0.096 3.904 18 O -0.280 6.280 19 C -0.153 4.153 20 C -0.109 4.109 21 C -0.073 4.073 22 Cl -0.030 7.030 23 C -0.022 4.022 24 Cl -0.013 7.013 25 H 0.134 0.866 26 H 0.116 0.884 27 H 0.050 0.950 28 H 0.116 0.884 29 H 0.011 0.989 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.241 0.759 35 H 0.159 0.841 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.398 -3.618 14.403 16.170 hybrid contribution 0.059 0.468 -0.478 0.672 sum 6.457 -3.149 13.925 15.669 Atomic orbital electron populations 1.81161 1.13214 1.09441 1.09441 1.29341 0.95394 0.92580 0.92552 1.19470 0.80594 1.04292 1.02636 1.21880 0.89894 0.94475 0.99936 1.62132 1.02854 1.57470 1.02260 1.19795 0.96860 0.90805 0.85267 1.21159 1.31869 1.11908 0.90075 0.91920 1.24936 0.95297 0.95056 0.99003 1.69975 1.36864 1.21476 1.24751 0.86614 0.78415 0.79992 0.83110 1.20831 1.21325 1.19777 1.20959 0.89399 0.98148 0.95415 1.19966 0.97278 0.92182 0.97909 1.18199 0.90646 0.86945 0.94575 1.85109 1.91707 1.15044 1.36160 1.21425 0.96304 0.96712 1.00810 1.20774 0.98707 0.92658 0.98750 1.20667 0.92709 0.88407 1.05551 1.98366 1.94001 1.22459 1.88208 1.20313 0.87912 0.91686 1.02336 1.98360 1.51696 1.63322 1.87952 0.86642 0.88396 0.95020 0.88370 0.98925 0.93599 0.93068 0.93621 0.90402 0.75879 0.84132 0.84124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.77 18.54 42.15 0.78 -6.99 16 2 C 0.22 3.22 15.43 -20.76 -0.32 2.90 16 3 C -0.03 -0.38 5.65 -29.52 -0.17 -0.54 16 4 C 0.07 1.11 4.77 -3.82 -0.02 1.09 16 5 N -0.52 -9.56 4.40 -237.52 -1.05 -10.61 16 6 C 0.20 4.67 4.31 -4.98 -0.02 4.65 16 7 C -0.51 -13.60 8.29 -34.44 -0.29 -13.88 16 8 H 0.06 1.65 7.25 -52.49 -0.38 1.27 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 10 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16 11 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 C 0.09 1.32 4.28 -4.98 -0.02 1.29 16 16 C -0.07 -1.05 4.90 -104.45 -0.51 -1.57 16 17 C 0.14 2.04 5.68 -39.23 -0.22 1.82 16 18 O -0.47 -6.82 11.38 -19.49 -0.22 -7.04 16 19 C -0.13 -1.65 9.99 -39.43 -0.39 -2.04 16 20 C -0.09 -1.05 9.82 -39.58 -0.39 -1.44 16 21 C -0.05 -0.60 6.32 -39.46 -0.25 -0.85 16 22 Cl -0.06 -0.71 27.95 -51.86 -1.45 -2.16 16 23 C 0.01 0.08 6.32 -39.49 -0.25 -0.17 16 24 Cl -0.04 -0.56 26.43 -51.86 -1.37 -1.93 16 25 H 0.12 1.47 8.14 -51.92 -0.42 1.05 16 26 H 0.10 1.03 6.73 -51.93 -0.35 0.68 16 27 H 0.03 0.50 8.06 -51.93 -0.42 0.08 16 28 H 0.10 1.86 6.58 -51.93 -0.34 1.52 16 29 H -0.01 -0.18 8.12 -51.93 -0.42 -0.61 16 30 H 0.05 1.19 5.62 -51.93 -0.29 0.90 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.05 0.67 7.25 -51.93 -0.38 0.29 16 33 H 0.08 0.97 5.41 -51.93 -0.28 0.69 16 34 H 0.39 3.31 9.06 45.56 0.41 3.72 16 35 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 340.71 15.07 5.13 5.13 Total: -1.00 -31.82 340.71 -8.25 -40.08 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -2.85 Total: -0.60 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -2.95 Total: -7.22 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.47 Total: -42.65 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.22 Total: -7.04 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -2.82 Total: -4.09 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.82 -8.25 -40.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237084837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.873 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds