Wall clock time and date at job start Tue Mar 31 2020 14:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47118 * 138.02546 * 3 2 1 5 5 N 1.46899 * 109.47223 * 185.72574 * 4 3 2 6 6 C 1.46903 * 111.00090 * 164.54112 * 5 4 3 7 7 C 1.50696 * 109.46855 * 293.95318 * 6 5 4 8 8 H 1.08000 * 120.00403 * 0.02562 * 7 6 5 9 9 C 1.37885 * 120.00021 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99588 * 359.97438 * 9 7 6 11 11 Si 1.86790 * 120.00068 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47228 * 89.99735 * 11 9 7 13 13 H 1.48507 * 109.47230 * 209.99689 * 11 9 7 14 14 H 1.48499 * 109.47607 * 329.99637 * 11 9 7 15 15 C 1.46899 * 111.00097 * 288.49696 * 5 4 3 16 16 C 1.50699 * 109.47312 * 164.30732 * 15 5 4 17 17 C 1.38730 * 120.02633 * 96.68289 * 16 15 5 18 18 O 1.35920 * 120.03871 * 359.96244 * 17 16 15 19 19 C 1.38708 * 119.92516 * 179.97438 * 17 16 15 20 20 C 1.38176 * 119.98220 * 0.02562 * 19 17 16 21 21 C 1.38315 * 120.05386 * 359.97124 * 20 19 17 22 22 Cl 1.73610 * 119.96125 * 180.02562 * 21 20 19 23 23 C 1.38224 * 120.02957 * 276.40640 * 16 15 5 24 24 Cl 1.73605 * 119.98967 * 0.02562 * 23 16 15 25 25 H 1.09008 * 109.47123 * 18.03189 * 3 2 1 26 26 H 1.08998 * 109.47413 * 258.02888 * 3 2 1 27 27 H 1.09001 * 109.47134 * 65.73036 * 4 3 2 28 28 H 1.09003 * 109.47492 * 305.72395 * 4 3 2 29 29 H 1.08993 * 109.46894 * 53.95618 * 6 5 4 30 30 H 1.09003 * 109.46936 * 173.95465 * 6 5 4 31 31 H 0.97001 * 119.99700 * 180.02562 * 10 9 7 32 32 H 1.09001 * 109.46835 * 284.30852 * 15 5 4 33 33 H 1.08999 * 109.47551 * 44.30452 * 15 5 4 34 34 H 0.96696 * 114.00698 * 89.99271 * 18 17 16 35 35 H 1.08001 * 120.00834 * 180.02562 * 19 17 16 36 36 H 1.08002 * 119.97318 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1175 1.0733 -0.9647 5 7 4.5800 0.9833 -1.0690 6 6 5.0714 1.7283 -2.2358 7 6 4.5806 1.0665 -3.4976 8 1 3.9648 0.1812 -3.4386 9 6 4.9177 1.5911 -4.7273 10 7 5.6672 2.6694 -4.7990 11 14 4.3088 0.7711 -6.2912 12 1 2.9994 1.3548 -6.6786 13 1 5.2919 0.9934 -7.3819 14 1 4.1509 -0.6867 -6.0568 15 6 5.2255 1.4514 0.1647 16 6 6.6624 0.9974 0.1833 17 6 7.6675 1.8567 -0.2363 18 8 7.3572 3.1086 -0.6652 19 6 8.9893 1.4368 -0.2178 20 6 9.3034 0.1636 0.2178 21 6 8.3007 -0.6924 0.6359 22 17 8.6980 -2.2913 1.1833 23 6 6.9806 -0.2736 0.6238 24 17 5.7244 -1.3476 1.1552 25 1 2.9717 -0.9764 -0.3181 26 1 2.9712 0.2140 1.0053 27 1 2.8399 2.0591 -0.5915 28 1 2.6729 0.9185 -1.9479 29 1 4.7012 2.7526 -2.1951 30 1 6.1614 1.7355 -2.2296 31 1 5.9040 3.0388 -5.6642 32 1 5.1880 2.5401 0.2038 33 1 4.7029 1.0387 1.0275 34 1 7.3521 3.7746 0.0358 35 1 9.7729 2.1048 -0.5437 36 1 10.3326 -0.1633 0.2317 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237084837.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:55 Heat of formation + Delta-G solvation = -19.800822 kcal Electronic energy + Delta-G solvation = -23331.300791 eV Core-core repulsion = 19673.791996 eV Total energy + Delta-G solvation = -3657.508795 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12245 -38.75564 -38.24540 -37.47830 -37.25865 -36.74803 -34.70723 -33.19191 -31.72737 -30.54967 -28.90358 -26.57157 -24.81589 -23.70070 -23.04671 -21.42989 -19.41779 -18.66223 -18.37908 -17.55725 -17.42055 -16.72398 -16.52540 -16.21740 -15.87101 -15.38691 -15.08370 -14.95122 -14.59546 -14.25837 -14.04816 -13.83719 -13.64865 -13.53485 -13.34676 -13.10750 -12.93341 -12.73014 -12.60562 -12.55349 -12.21044 -11.99282 -11.97955 -11.87488 -11.68157 -11.53498 -11.41202 -11.12100 -10.51146 -9.74552 -9.41403 -8.93836 -8.09981 -6.16952 -0.01709 0.10587 0.94969 1.31195 1.42133 1.43683 1.53478 1.74705 1.81778 2.35971 2.46095 2.99157 3.22852 3.29547 3.60125 3.68994 3.97915 4.15146 4.17694 4.30601 4.37224 4.43973 4.61040 4.68563 4.84929 4.97332 5.05271 5.06083 5.15003 5.32177 5.43688 5.53205 5.56226 5.74877 6.18958 6.39749 6.58731 6.70600 6.91177 7.00608 7.50861 8.99584 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.008986 B = 0.005439 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.166519 B = 5147.045707 C = 6716.723046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.242 3.758 3 C -0.014 4.014 4 C 0.068 3.932 5 N -0.524 5.524 6 C 0.220 3.780 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.008 3.992 10 N -0.926 5.926 11 Si 0.949 3.051 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.267 1.267 15 C 0.091 3.909 16 C -0.093 4.093 17 C 0.130 3.870 18 O -0.495 6.495 19 C -0.136 4.136 20 C -0.081 4.081 21 C -0.057 4.057 22 Cl -0.051 7.051 23 C -0.003 4.003 24 Cl -0.038 7.038 25 H 0.124 0.876 26 H 0.131 0.869 27 H 0.038 0.962 28 H 0.068 0.932 29 H -0.039 1.039 30 H 0.025 0.975 31 H 0.259 0.741 32 H 0.046 0.954 33 H 0.105 0.895 34 H 0.406 0.594 35 H 0.160 0.840 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.674 -3.844 16.009 18.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.075 4.075 3 C -0.054 4.054 4 C -0.061 4.061 5 N -0.248 5.248 6 C 0.094 3.906 7 C -0.558 4.558 8 H 0.080 0.920 9 C -0.191 4.191 10 N -0.566 5.566 11 Si 0.776 3.224 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.191 1.191 15 C -0.036 4.036 16 C -0.095 4.095 17 C 0.084 3.916 18 O -0.308 6.308 19 C -0.155 4.155 20 C -0.100 4.100 21 C -0.084 4.084 22 Cl -0.022 7.022 23 C -0.032 4.032 24 Cl -0.008 7.008 25 H 0.142 0.858 26 H 0.148 0.852 27 H 0.056 0.944 28 H 0.087 0.913 29 H -0.021 1.021 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.123 0.877 34 H 0.266 0.734 35 H 0.178 0.822 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.033 -4.722 15.379 17.558 hybrid contribution -0.087 0.824 -0.703 1.086 sum 6.946 -3.899 14.677 16.699 Atomic orbital electron populations 1.81190 1.14482 1.10755 1.10883 1.29492 0.95411 0.91337 0.91249 1.19408 0.79286 1.03355 1.03322 1.21805 0.88740 0.96148 0.99442 1.61970 1.03943 1.56625 1.02261 1.19299 0.95335 0.89320 0.86682 1.21553 1.31130 1.11649 0.91431 0.92017 1.25695 0.95654 0.95657 1.02064 1.70094 1.38344 1.22911 1.25292 0.85685 0.77877 0.79259 0.79628 1.20460 1.21159 1.19143 1.21015 0.89906 0.98387 0.94313 1.19991 0.97140 0.92877 0.99491 1.18451 0.91523 0.86922 0.94696 1.85043 1.91888 1.15892 1.37994 1.21672 0.96036 0.97351 1.00391 1.21118 0.99822 0.91963 0.97071 1.20844 0.92716 0.89083 1.05773 1.98367 1.93880 1.21816 1.88104 1.20432 0.88601 0.91614 1.02527 1.98351 1.51580 1.63034 1.87873 0.85803 0.85162 0.94408 0.91335 1.02118 0.95699 0.93180 0.93609 0.87724 0.73440 0.82208 0.81325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.43 18.54 20.00 0.37 -16.06 16 2 C 0.24 6.74 15.43 89.44 1.38 8.12 16 3 C -0.01 -0.32 5.65 28.79 0.16 -0.16 16 4 C 0.07 2.18 4.77 86.30 0.41 2.60 16 5 N -0.52 -18.92 4.40 -905.37 -3.99 -22.91 16 6 C 0.22 10.59 4.31 85.56 0.37 10.96 16 7 C -0.52 -27.89 8.29 25.60 0.21 -27.68 16 8 H 0.06 3.26 7.25 -2.91 -0.02 3.23 16 9 C 0.01 0.42 5.46 84.66 0.46 0.89 16 10 N -0.93 -54.47 13.29 21.45 0.28 -54.19 16 11 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 15 C 0.09 2.60 4.28 85.56 0.37 2.97 16 16 C -0.09 -2.66 4.90 -19.75 -0.10 -2.76 16 17 C 0.13 3.64 5.68 22.50 0.13 3.77 16 18 O -0.50 -14.41 11.38 -92.65 -1.05 -15.46 16 19 C -0.14 -3.14 9.99 22.37 0.22 -2.92 16 20 C -0.08 -1.72 9.82 22.27 0.22 -1.50 16 21 C -0.06 -1.38 6.32 22.35 0.14 -1.24 16 22 Cl -0.05 -1.11 27.95 -2.72 -0.08 -1.19 16 23 C 0.00 -0.09 6.32 22.33 0.14 0.05 16 24 Cl -0.04 -0.91 26.43 -2.72 -0.07 -0.98 16 25 H 0.12 2.85 8.14 -2.38 -0.02 2.83 16 26 H 0.13 2.29 6.73 -2.39 -0.02 2.28 16 27 H 0.04 1.16 8.06 -2.39 -0.02 1.14 16 28 H 0.07 2.61 6.58 -2.39 -0.02 2.59 16 29 H -0.04 -2.09 8.12 -2.39 -0.02 -2.11 16 30 H 0.02 1.32 5.62 -2.39 -0.01 1.30 16 31 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.05 1.32 7.25 -2.39 -0.02 1.30 16 33 H 0.10 2.36 5.41 -2.39 -0.01 2.34 16 34 H 0.41 6.95 9.06 -74.06 -0.67 6.28 16 35 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 36 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -68.93 340.71 2.09 -66.84 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 0.48 Total: 4.73 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 4.12 Total: -6.90 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -3.33 Total: -93.15 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -1.05 Total: -15.46 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.15 Total: -2.17 kcal Total: -68.93 2.09 -66.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237084837.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.039 kcal (2) G-P(sol) polarization free energy of solvation -68.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds