Wall clock time and date at job start Tue Mar 31 2020 15:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.46890 * 2 1 4 4 C 1.46900 * 110.99622 * 164.39228 * 3 2 1 5 5 C 1.50705 * 109.47014 * 293.94957 * 4 3 2 6 6 H 1.07998 * 119.99937 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99943 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00100 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99830 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46957 * 90.00226 * 9 7 5 11 11 H 1.48508 * 109.47184 * 210.00039 * 9 7 5 12 12 H 1.48498 * 109.47175 * 330.00025 * 9 7 5 13 13 C 1.46896 * 111.00004 * 288.34174 * 3 2 1 14 14 C 1.50699 * 109.46980 * 165.81140 * 13 3 2 15 15 C 1.38778 * 120.36225 * 103.78311 * 14 13 3 16 16 C 1.38405 * 118.49992 * 179.78150 * 15 14 13 17 17 C 1.38899 * 119.13417 * 0.47193 * 16 15 14 18 18 O 1.35679 * 119.67714 * 179.74680 * 17 16 15 19 19 C 1.42898 * 116.99524 * 180.02562 * 18 17 16 20 20 N 1.32260 * 120.64245 * 359.77034 * 17 16 15 21 21 C 1.32039 * 121.63581 * 359.97438 * 20 17 16 22 22 Br 1.89098 * 119.59489 * 179.97438 * 21 20 17 23 23 H 1.09002 * 109.46941 * 306.08103 * 1 2 3 24 24 H 1.09000 * 109.46724 * 66.08369 * 1 2 3 25 25 H 1.08997 * 109.46946 * 186.07764 * 1 2 3 26 26 H 1.08997 * 109.46979 * 240.00154 * 2 1 3 27 27 H 1.09003 * 109.46826 * 119.99818 * 2 1 3 28 28 H 1.08997 * 109.47537 * 53.94876 * 4 3 2 29 29 H 1.09001 * 109.47043 * 173.95637 * 4 3 2 30 30 H 0.96996 * 119.99682 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47234 * 285.81352 * 13 3 2 32 32 H 1.09004 * 109.46860 * 45.81638 * 13 3 2 33 33 H 1.08003 * 120.74940 * 0.02679 * 15 14 13 34 34 H 1.08004 * 120.43288 * 180.24671 * 16 15 14 35 35 H 1.08994 * 109.47354 * 60.00071 * 19 18 17 36 36 H 1.09002 * 109.46973 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.47329 * 299.99591 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4405 1.4410 0.3690 5 6 3.6051 1.0026 1.8014 6 1 2.7408 0.7111 2.3797 7 6 4.8592 0.9736 2.3737 8 7 5.0029 0.5905 3.6236 9 14 6.3540 1.4785 1.3737 10 1 6.5869 2.9364 1.5334 11 1 7.5451 0.7316 1.8523 12 1 6.1185 1.1689 -0.0594 13 6 1.7882 2.0252 -1.3017 14 6 1.9725 3.5149 -1.1687 15 6 3.1263 4.1240 -1.6416 16 6 3.2533 5.4953 -1.5035 17 6 2.2324 6.2107 -0.8910 18 8 2.3477 7.5547 -0.7452 19 6 1.2643 8.2333 -0.1066 20 7 1.1492 5.5945 -0.4480 21 6 0.9968 4.2886 -0.5697 22 35 -0.5755 3.4669 0.0851 23 1 -0.3633 0.6052 0.8306 24 1 -0.3633 0.4166 -0.9395 25 1 -0.3633 -1.0219 0.1088 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.0113 0.7785 -0.2816 29 1 3.8048 2.4623 0.2575 30 1 5.8852 0.5698 4.0260 31 1 2.4989 1.6348 -2.0301 32 1 0.7724 1.8131 -1.6354 33 1 3.9057 3.5417 -2.1105 34 1 4.1364 6.0020 -1.8641 35 1 1.1325 7.8396 0.9012 36 1 1.4836 9.2997 -0.0547 37 1 0.3502 8.0782 -0.6797 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238180696.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:24 Heat of formation + Delta-G solvation = 11.178072 kcal Electronic energy + Delta-G solvation = -20517.845318 eV Core-core repulsion = 17342.376113 eV Total energy + Delta-G solvation = -3175.469205 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.64148 -38.29579 -36.81833 -32.86896 -32.64560 -32.06917 -30.30332 -29.59138 -27.98864 -26.77597 -24.76826 -23.18289 -22.08051 -21.97250 -19.77677 -18.32005 -17.13927 -16.83992 -16.05066 -15.61913 -14.82818 -14.55364 -14.36476 -14.22742 -13.77096 -13.52485 -13.44234 -13.06391 -12.74602 -12.39254 -12.10670 -11.89287 -11.61609 -11.39807 -11.21870 -11.06748 -10.62674 -10.46838 -10.44292 -10.14613 -9.90789 -9.85263 -9.64484 -9.54719 -9.24371 -8.56414 -8.24345 -7.37755 -6.04773 -4.01300 1.01679 1.28786 1.61539 3.07576 3.26597 3.33534 3.34256 3.67192 4.41040 4.47538 4.74702 4.92233 5.04076 5.13896 5.24114 5.28043 5.28784 5.37708 5.53741 5.61826 5.71998 5.83774 5.94421 5.98549 6.10740 6.27204 6.32170 6.36456 6.67873 6.71788 6.92164 6.98514 7.15339 7.59502 7.68891 7.89713 8.03732 8.65833 9.05283 9.57151 11.08409 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.011531 B = 0.006446 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.627100 B = 4342.432493 C = 5841.366989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 N -0.515 5.515 4 C 0.161 3.839 5 C -0.505 4.505 6 H 0.082 0.918 7 C 0.069 3.931 8 N -0.900 5.900 9 Si 0.870 3.130 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.089 3.911 14 C -0.116 4.116 15 C -0.031 4.031 16 C -0.177 4.177 17 C 0.321 3.679 18 O -0.308 6.308 19 C 0.040 3.960 20 N -0.522 5.522 21 C 0.185 3.815 22 Br 0.007 6.993 23 H 0.063 0.937 24 H 0.043 0.957 25 H 0.048 0.952 26 H 0.019 0.981 27 H 0.093 0.907 28 H -0.012 1.012 29 H 0.022 0.978 30 H 0.263 0.737 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.643 8.902 -12.382 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.069 4.069 3 N -0.239 5.239 4 C 0.034 3.966 5 C -0.543 4.543 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.697 3.303 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.040 4.040 14 C -0.121 4.121 15 C -0.058 4.058 16 C -0.198 4.198 17 C 0.140 3.860 18 O -0.215 6.215 19 C -0.055 4.055 20 N -0.246 5.246 21 C -0.031 4.031 22 Br 0.092 6.908 23 H 0.082 0.918 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.037 0.963 27 H 0.111 0.889 28 H 0.005 0.995 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.815 9.502 -11.301 18.302 hybrid contribution 2.238 -0.271 -1.282 2.594 sum -8.577 9.230 -12.583 17.807 Atomic orbital electron populations 1.21843 0.96392 1.00462 1.01589 1.21979 0.94387 0.89203 1.01311 1.61983 1.21016 1.16603 1.24285 1.20211 0.83342 0.95805 0.97206 1.21014 0.94674 1.43834 0.94786 0.89964 1.24881 0.98558 0.95074 0.94737 1.69888 1.23339 1.48252 1.12394 0.86946 0.83242 0.79080 0.81035 1.20204 1.21206 1.19257 1.21037 1.01632 0.88380 0.92935 1.20507 0.94018 0.97630 0.99991 1.21379 0.95970 0.93326 0.95129 1.21089 0.99975 0.94028 1.04725 1.19668 0.89783 0.84329 0.92259 1.86224 1.44447 1.15341 1.75461 1.22853 0.88865 0.95935 0.97887 1.66977 1.24079 1.11032 1.22545 1.22183 0.94651 0.89258 0.96989 1.96735 1.29509 1.78155 1.86426 0.91793 0.93769 0.93339 0.96316 0.88904 0.99458 0.95963 0.92724 0.94346 0.89625 0.83555 0.83711 0.92070 0.88751 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.67 37.16 0.36 -1.82 16 2 C 0.06 1.07 5.53 -3.82 -0.02 1.05 16 3 N -0.51 -10.18 4.23 -237.51 -1.00 -11.18 16 4 C 0.16 3.76 3.64 -4.97 -0.02 3.74 16 5 C -0.50 -14.07 8.84 -34.44 -0.30 -14.38 16 6 H 0.08 2.51 7.49 -52.49 -0.39 2.11 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 9 Si 0.87 21.30 27.47 -169.99 -4.67 16.63 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 13 C 0.09 1.45 4.23 -4.98 -0.02 1.43 16 14 C -0.12 -1.92 4.66 -104.44 -0.49 -2.40 16 15 C -0.03 -0.47 8.95 -39.32 -0.35 -0.82 16 16 C -0.18 -2.53 10.04 -39.27 -0.39 -2.93 16 17 C 0.32 5.02 7.49 -17.12 -0.13 4.89 16 18 O -0.31 -4.32 10.48 -18.74 -0.20 -4.52 16 19 C 0.04 0.44 10.38 101.05 1.05 1.49 16 20 N -0.52 -8.75 9.18 -11.72 -0.11 -8.86 16 21 C 0.18 3.15 7.16 -17.48 -0.13 3.02 16 22 Br 0.01 0.11 31.54 -68.01 -2.15 -2.03 16 23 H 0.06 1.03 7.75 -51.93 -0.40 0.63 16 24 H 0.04 0.59 6.76 -51.93 -0.35 0.24 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.02 0.32 8.06 -51.93 -0.42 -0.10 16 27 H 0.09 1.94 6.59 -51.93 -0.34 1.60 16 28 H -0.01 -0.29 7.18 -51.93 -0.37 -0.66 16 29 H 0.02 0.53 5.94 -51.93 -0.31 0.22 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.04 0.59 7.94 -51.93 -0.41 0.18 16 32 H 0.09 1.26 5.61 -51.93 -0.29 0.97 16 33 H 0.15 1.86 8.05 -52.48 -0.42 1.44 16 34 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 35 H 0.06 0.73 8.10 -51.93 -0.42 0.30 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 323.90 15.07 4.88 4.88 Total: -1.00 -31.22 323.90 -8.00 -39.22 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -4.99 Total: -2.59 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -0.54 Total: -4.85 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.34 Total: -46.73 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.20 Total: -4.52 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Atomic # 35 Polarization: 0.11 SS G_CDS: -2.15 Total: -2.03 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.22 -8.00 -39.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238180696.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.397 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds