Wall clock time and date at job start Tue Mar 31 2020 15:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42904 * 109.46873 * 2 1 4 4 C 1.35692 * 116.99787 * 179.97438 * 3 2 1 5 5 C 1.38916 * 119.67500 * 180.26990 * 4 3 2 6 6 C 1.38373 * 119.12147 * 180.20559 * 5 4 3 7 7 C 1.50701 * 120.75986 * 179.80120 * 6 5 4 8 8 N 1.46906 * 109.46965 * 104.72449 * 7 6 5 9 9 C 1.46902 * 110.99573 * 293.95399 * 8 7 6 10 10 C 1.46898 * 110.99888 * 170.00033 * 8 7 6 11 11 C 1.50702 * 109.46796 * 189.99926 * 10 8 7 12 12 H 1.08003 * 119.99822 * 359.97438 * 11 10 8 13 13 C 1.37873 * 119.99809 * 180.02562 * 11 10 8 14 14 N 1.31519 * 120.00257 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99969 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47271 * 0.02562 * 15 13 11 17 17 H 1.48511 * 109.47155 * 119.99875 * 15 13 11 18 18 H 1.48499 * 109.47180 * 239.99883 * 15 13 11 19 19 C 1.38900 * 118.47670 * 359.53096 * 6 5 4 20 20 Br 1.89098 * 120.36426 * 180.26845 * 19 6 5 21 21 C 1.38125 * 119.27437 * 0.25269 * 19 6 5 22 22 N 1.31971 * 120.81938 * 359.97151 * 21 19 6 23 23 H 1.09003 * 109.47063 * 300.00199 * 1 2 3 24 24 H 1.08997 * 109.47180 * 59.99971 * 1 2 3 25 25 H 1.08995 * 109.46750 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47398 * 239.99654 * 2 1 3 27 27 H 1.09000 * 109.46854 * 119.99354 * 2 1 3 28 28 H 1.07996 * 120.43881 * 359.97438 * 5 4 3 29 29 H 1.08993 * 109.47133 * 344.72486 * 7 6 5 30 30 H 1.08996 * 109.47320 * 224.72227 * 7 6 5 31 31 H 1.09004 * 109.47457 * 60.00221 * 9 8 7 32 32 H 1.09001 * 109.46615 * 179.97438 * 9 8 7 33 33 H 1.08990 * 109.47358 * 299.99539 * 9 8 7 34 34 H 1.08999 * 109.46988 * 309.99510 * 10 8 7 35 35 H 1.08996 * 109.46945 * 69.99996 * 10 8 7 36 36 H 0.97001 * 120.00059 * 180.02562 * 14 13 11 37 37 H 1.07997 * 119.59507 * 179.97438 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3516 1.5251 0.0005 5 6 3.8752 2.8118 0.0063 6 6 5.2487 2.9799 0.0024 7 6 5.8565 4.3589 0.0039 8 7 6.3802 4.6617 1.3426 9 6 5.2916 4.7585 2.3242 10 6 7.1859 5.8899 1.3272 11 6 7.9031 6.0367 2.6444 12 1 7.7730 5.2923 3.4160 13 6 8.7245 7.1219 2.8649 14 7 8.8826 8.0287 1.9256 15 14 9.6129 7.3042 4.4980 16 1 9.2701 6.1587 5.3787 17 1 11.0793 7.3266 4.2641 18 1 9.1962 8.5720 5.1494 19 6 6.0544 1.8484 0.0029 20 35 7.9379 2.0162 0.0054 21 6 5.4647 0.5994 0.0019 22 7 4.1512 0.4718 0.0010 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 3.2191 3.6696 0.0098 29 1 5.0950 5.0918 -0.2627 30 1 6.6689 4.3987 -0.7216 31 1 4.7541 3.8110 2.3653 32 1 5.7072 4.9829 3.3066 33 1 4.6060 5.5527 2.0293 34 1 7.9164 5.8352 0.5200 35 1 6.5347 6.7497 1.1702 36 1 9.4608 8.7919 2.0806 37 1 6.0862 -0.2839 0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238406019.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:16 Heat of formation + Delta-G solvation = 3.400972 kcal Electronic energy + Delta-G solvation = -19817.121139 eV Core-core repulsion = 16641.314693 eV Total energy + Delta-G solvation = -3175.806446 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.75169 -38.38699 -36.60240 -33.30575 -32.48379 -32.12420 -31.13813 -28.69624 -27.53459 -26.91473 -24.49483 -23.38225 -23.13306 -21.54682 -20.29793 -18.07163 -17.04770 -16.44815 -16.30478 -15.61845 -15.03788 -14.86818 -14.40462 -14.16604 -13.89693 -13.78042 -13.46541 -12.87366 -12.66185 -12.26071 -12.05689 -11.89973 -11.73925 -11.41436 -11.30110 -11.07070 -10.90743 -10.67429 -10.50529 -10.43816 -10.11071 -9.94097 -9.54260 -9.43049 -9.18921 -8.43475 -8.30493 -7.29674 -6.02397 -4.02881 1.00016 1.14604 1.91362 2.88471 3.31495 3.39155 3.44149 3.61327 4.18016 4.43446 4.71470 4.78042 4.78434 4.88784 4.95883 5.11443 5.17090 5.34229 5.40649 5.53645 5.58866 5.67159 5.67998 5.80647 5.96743 6.13516 6.16952 6.29723 6.36021 6.72913 7.11031 7.24915 7.30256 7.68641 7.78416 8.04755 8.15332 8.50900 9.04599 9.61025 11.08597 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.003941 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.600261 B = 7102.853988 C = 8196.703560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.066 3.934 3 O -0.306 6.306 4 C 0.329 3.671 5 C -0.183 4.183 6 C 0.039 3.961 7 C 0.081 3.919 8 N -0.523 5.523 9 C 0.035 3.965 10 C 0.196 3.804 11 C -0.502 4.502 12 H 0.064 0.936 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.286 1.286 19 C -0.162 4.162 20 Br -0.013 7.013 21 C 0.164 3.836 22 N -0.540 5.540 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.145 0.855 29 H 0.041 0.959 30 H 0.093 0.907 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.013 0.987 34 H 0.033 0.967 35 H -0.009 1.009 36 H 0.260 0.740 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.833 -15.949 -6.516 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.213 6.213 4 C 0.150 3.850 5 C -0.205 4.205 6 C 0.029 3.971 7 C -0.047 4.047 8 N -0.247 5.247 9 C -0.113 4.113 10 C 0.071 3.929 11 C -0.540 4.540 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.212 1.212 19 C -0.245 4.245 20 Br 0.072 6.928 21 C 0.007 3.993 22 N -0.265 5.265 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.162 0.838 29 H 0.059 0.941 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.031 0.969 34 H 0.051 0.949 35 H 0.009 0.991 36 H 0.070 0.930 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.338 -16.729 -6.404 20.682 hybrid contribution -0.048 1.418 0.628 1.552 sum -10.385 -15.311 -5.776 19.381 Atomic orbital electron populations 1.21822 0.93085 1.02805 1.03353 1.22601 0.94671 0.81133 1.02536 1.86244 1.16802 1.30609 1.87667 1.19775 0.83879 0.89854 0.91491 1.20980 0.94713 0.95906 1.08915 1.20187 0.91464 0.96228 0.89177 1.21185 0.98721 0.89465 0.95304 1.62173 1.20459 1.40236 1.01845 1.22268 0.92844 0.97998 0.98235 1.19744 0.91489 0.83225 0.98420 1.21157 1.26258 1.06931 0.99697 0.91751 1.24966 0.96851 0.95808 0.96967 1.69966 1.38780 1.12052 1.33088 0.86474 0.79459 0.77883 0.83804 1.19642 1.21047 1.21183 1.22669 0.93549 0.95953 1.12283 1.96777 1.00016 1.98571 1.97464 1.22367 0.89135 0.95746 0.92079 1.67402 1.05738 1.32806 1.20507 0.91607 0.91669 0.90362 0.91635 0.91578 0.83771 0.94075 0.88926 0.93976 0.90410 0.96876 0.94903 0.99073 0.93018 0.81786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.07 0.65 6.03 37.16 0.22 0.87 16 3 O -0.31 -3.92 10.12 -18.78 -0.19 -4.11 16 4 C 0.33 4.63 7.49 -17.12 -0.13 4.50 16 5 C -0.18 -2.63 9.17 -39.28 -0.36 -2.99 16 6 C 0.04 0.61 4.45 -104.33 -0.46 0.15 16 7 C 0.08 1.43 4.42 -4.97 -0.02 1.40 16 8 N -0.52 -10.88 4.60 -245.83 -1.13 -12.01 16 9 C 0.04 0.68 9.16 60.07 0.55 1.23 16 10 C 0.20 4.94 4.72 -4.98 -0.02 4.92 16 11 C -0.50 -13.81 8.46 -34.44 -0.29 -14.11 16 12 H 0.06 1.77 7.12 -52.48 -0.37 1.40 16 13 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 15 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 19 C -0.16 -2.42 6.24 -39.38 -0.25 -2.67 16 20 Br -0.01 -0.21 32.20 -68.01 -2.19 -2.39 16 21 C 0.16 2.19 10.93 -17.53 -0.19 2.00 16 22 N -0.54 -7.48 9.22 -13.31 -0.12 -7.60 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 27 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 28 H 0.14 1.89 8.05 -52.49 -0.42 1.46 16 29 H 0.04 0.69 7.99 -51.93 -0.41 0.27 16 30 H 0.09 1.64 7.30 -51.93 -0.38 1.27 16 31 H 0.04 0.74 6.88 -51.93 -0.36 0.38 16 32 H 0.08 1.62 6.76 -51.93 -0.35 1.27 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.03 0.88 7.93 -51.93 -0.41 0.47 16 35 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.17 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 332.38 15.07 5.01 5.01 Total: -1.00 -29.82 332.38 -8.80 -38.62 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -5.22 Total: -4.42 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.67 Total: -3.96 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -0.52 Total: -45.28 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.19 Total: -4.11 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 35 Polarization: -0.21 SS G_CDS: -2.19 Total: -2.39 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.82 -8.80 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238406019.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.016 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds