Wall clock time and date at job start Tue Mar 31 2020 15:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42904 * 109.46873 * 2 1 4 4 C 1.35692 * 116.99787 * 179.97438 * 3 2 1 5 5 C 1.38916 * 119.67500 * 180.26990 * 4 3 2 6 6 C 1.38373 * 119.12147 * 180.20559 * 5 4 3 7 7 C 1.50701 * 120.75986 * 179.80120 * 6 5 4 8 8 N 1.46906 * 109.46965 * 104.72449 * 7 6 5 9 9 C 1.46902 * 110.99573 * 293.95399 * 8 7 6 10 10 C 1.46898 * 110.99888 * 170.00033 * 8 7 6 11 11 C 1.50702 * 109.46796 * 189.99926 * 10 8 7 12 12 H 1.08003 * 119.99822 * 359.97438 * 11 10 8 13 13 C 1.37873 * 119.99809 * 180.02562 * 11 10 8 14 14 N 1.31519 * 120.00257 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99969 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47271 * 0.02562 * 15 13 11 17 17 H 1.48511 * 109.47155 * 119.99875 * 15 13 11 18 18 H 1.48499 * 109.47180 * 239.99883 * 15 13 11 19 19 C 1.38900 * 118.47670 * 359.53096 * 6 5 4 20 20 Br 1.89098 * 120.36426 * 180.26845 * 19 6 5 21 21 C 1.38125 * 119.27437 * 0.25269 * 19 6 5 22 22 N 1.31971 * 120.81938 * 359.97151 * 21 19 6 23 23 H 1.09003 * 109.47063 * 300.00199 * 1 2 3 24 24 H 1.08997 * 109.47180 * 59.99971 * 1 2 3 25 25 H 1.08995 * 109.46750 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47398 * 239.99654 * 2 1 3 27 27 H 1.09000 * 109.46854 * 119.99354 * 2 1 3 28 28 H 1.07996 * 120.43881 * 359.97438 * 5 4 3 29 29 H 1.08993 * 109.47133 * 344.72486 * 7 6 5 30 30 H 1.08996 * 109.47320 * 224.72227 * 7 6 5 31 31 H 1.09004 * 109.47457 * 60.00221 * 9 8 7 32 32 H 1.09001 * 109.46615 * 179.97438 * 9 8 7 33 33 H 1.08990 * 109.47358 * 299.99539 * 9 8 7 34 34 H 1.08999 * 109.46988 * 309.99510 * 10 8 7 35 35 H 1.08996 * 109.46945 * 69.99996 * 10 8 7 36 36 H 0.97001 * 120.00059 * 180.02562 * 14 13 11 37 37 H 1.07997 * 119.59507 * 179.97438 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3516 1.5251 0.0005 5 6 3.8752 2.8118 0.0063 6 6 5.2487 2.9799 0.0024 7 6 5.8565 4.3589 0.0039 8 7 6.3802 4.6617 1.3426 9 6 5.2916 4.7585 2.3242 10 6 7.1859 5.8899 1.3272 11 6 7.9031 6.0367 2.6444 12 1 7.7730 5.2923 3.4160 13 6 8.7245 7.1219 2.8649 14 7 8.8826 8.0287 1.9256 15 14 9.6129 7.3042 4.4980 16 1 9.2701 6.1587 5.3787 17 1 11.0793 7.3266 4.2641 18 1 9.1962 8.5720 5.1494 19 6 6.0544 1.8484 0.0029 20 35 7.9379 2.0162 0.0054 21 6 5.4647 0.5994 0.0019 22 7 4.1512 0.4718 0.0010 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 3.2191 3.6696 0.0098 29 1 5.0950 5.0918 -0.2627 30 1 6.6689 4.3987 -0.7216 31 1 4.7541 3.8110 2.3653 32 1 5.7072 4.9829 3.3066 33 1 4.6060 5.5527 2.0293 34 1 7.9164 5.8352 0.5200 35 1 6.5347 6.7497 1.1702 36 1 9.4608 8.7919 2.0806 37 1 6.0862 -0.2839 0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238406019.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:16 Heat of formation + Delta-G solvation = -16.164022 kcal Electronic energy + Delta-G solvation = -19817.969541 eV Core-core repulsion = 16641.314693 eV Total energy + Delta-G solvation = -3176.654848 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.84262 -39.47637 -38.13344 -35.00183 -33.84742 -33.36627 -32.11811 -29.83900 -29.31318 -28.47811 -26.08229 -24.55477 -24.17044 -22.88675 -21.83134 -19.17893 -18.41231 -18.12464 -17.36992 -16.83305 -16.74916 -16.09358 -15.98078 -15.55359 -15.15699 -14.96420 -14.86703 -13.98540 -13.64362 -13.56711 -13.44689 -13.32134 -13.09324 -12.85691 -12.66145 -12.57041 -12.44947 -12.30494 -12.06455 -11.87757 -11.48896 -11.31973 -11.25031 -10.70028 -10.63099 -10.56051 -9.41406 -9.01442 -8.16924 -6.24942 -0.10615 -0.01868 0.74589 1.41798 1.43315 1.56000 1.92945 2.41520 2.50312 3.14775 3.16568 3.39169 3.53671 3.80702 3.86867 4.09926 4.17595 4.22892 4.45683 4.46734 4.50368 4.62299 4.63572 4.70484 4.79096 4.96312 4.99323 5.09625 5.17495 5.22125 5.25804 5.33677 5.68388 6.07077 6.11996 6.30649 6.58566 6.60191 6.90400 7.43866 8.94250 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.003941 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.600261 B = 7102.853988 C = 8196.703560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.312 6.312 4 C 0.328 3.672 5 C -0.184 4.184 6 C 0.029 3.971 7 C 0.085 3.915 8 N -0.527 5.527 9 C 0.042 3.958 10 C 0.214 3.786 11 C -0.513 4.513 12 H 0.062 0.938 13 C 0.004 3.996 14 N -0.934 5.934 15 Si 0.963 3.037 16 H -0.265 1.265 17 H -0.281 1.281 18 H -0.280 1.280 19 C -0.171 4.171 20 Br -0.025 7.025 21 C 0.173 3.827 22 N -0.539 5.539 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.155 0.845 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.017 0.983 34 H 0.009 0.991 35 H -0.034 1.034 36 H 0.263 0.737 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.871 -17.477 -5.909 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.015 4.015 3 O -0.220 6.220 4 C 0.149 3.851 5 C -0.206 4.206 6 C 0.020 3.980 7 C -0.042 4.042 8 N -0.251 5.251 9 C -0.106 4.106 10 C 0.088 3.912 11 C -0.552 4.552 12 H 0.080 0.920 13 C -0.194 4.194 14 N -0.575 5.575 15 Si 0.788 3.212 16 H -0.189 1.189 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.254 4.254 20 Br 0.060 6.940 21 C 0.015 3.985 22 N -0.264 5.264 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.119 0.881 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.173 0.827 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.036 0.964 34 H 0.027 0.973 35 H -0.017 1.017 36 H 0.072 0.928 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -11.405 -18.280 -5.800 22.313 hybrid contribution 0.169 1.806 0.381 1.853 sum -11.237 -16.474 -5.419 20.664 Atomic orbital electron populations 1.21843 0.90985 1.04334 1.03340 1.22874 0.96313 0.79750 1.02602 1.86256 1.15970 1.32495 1.87246 1.19885 0.84555 0.89758 0.90888 1.21039 0.94225 0.96672 1.08635 1.19956 0.92131 0.95115 0.90808 1.21109 0.98750 0.91125 0.93261 1.62022 1.21417 1.37599 1.04046 1.22196 0.92358 0.99233 0.96853 1.19350 0.90994 0.84180 0.96711 1.21435 1.26443 1.06874 1.00430 0.92022 1.25809 0.97656 0.95493 1.00463 1.70081 1.39609 1.12664 1.35105 0.85431 0.78132 0.78078 0.79566 1.18865 1.20641 1.20565 1.22730 0.92901 0.96536 1.13250 1.96768 1.01081 1.98620 1.97545 1.22752 0.89189 0.95968 0.90564 1.67502 1.05808 1.32684 1.20420 0.91739 0.91539 0.88058 0.91371 0.91665 0.82723 0.93300 0.89645 0.91894 0.92171 0.96416 0.97257 1.01667 0.92818 0.79178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 71.98 0.74 -1.03 16 2 C 0.06 1.04 6.03 71.98 0.43 1.48 16 3 O -0.31 -7.40 10.12 -90.11 -0.91 -8.32 16 4 C 0.33 8.61 7.49 84.79 0.63 9.24 16 5 C -0.18 -4.98 9.17 22.46 0.21 -4.78 16 6 C 0.03 0.89 4.45 -19.67 -0.09 0.80 16 7 C 0.09 2.98 4.42 85.56 0.38 3.36 16 8 N -0.53 -22.02 4.60 -931.66 -4.29 -26.30 16 9 C 0.04 1.61 9.16 127.69 1.17 2.77 16 10 C 0.21 11.04 4.72 85.56 0.40 11.45 16 11 C -0.51 -28.58 8.46 25.60 0.22 -28.37 16 12 H 0.06 3.41 7.12 -2.91 -0.02 3.39 16 13 C 0.00 0.20 5.46 84.65 0.46 0.67 16 14 N -0.93 -55.61 13.29 21.45 0.28 -55.33 16 15 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 16 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 C -0.17 -4.93 6.24 22.40 0.14 -4.79 16 20 Br -0.02 -0.77 32.20 -20.37 -0.66 -1.42 16 21 C 0.17 4.26 10.93 84.64 0.93 5.18 16 22 N -0.54 -13.77 9.22 -308.87 -2.85 -16.62 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 26 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 27 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 28 H 0.16 3.79 8.05 -2.91 -0.02 3.77 16 29 H 0.05 1.63 7.99 -2.39 -0.02 1.61 16 30 H 0.09 3.09 7.30 -2.39 -0.02 3.07 16 31 H 0.06 2.13 6.88 -2.38 -0.02 2.12 16 32 H 0.06 2.50 6.76 -2.39 -0.02 2.48 16 33 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.01 0.52 7.93 -2.39 -0.02 0.50 16 35 H -0.03 -1.92 8.12 -2.39 -0.02 -1.94 16 36 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 37 H 0.19 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -63.12 332.38 0.29 -62.82 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: 1.06 Total: 2.89 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 5.62 Total: -4.01 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -6.85 Total: -98.25 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.91 Total: -8.32 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -0.66 Total: -1.42 kcal Total: -63.12 0.29 -62.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238406019.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.658 kcal (2) G-P(sol) polarization free energy of solvation -63.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds