Wall clock time and date at job start Tue Mar 31 2020 15:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35688 * 117.00058 * 180.02562 * 3 2 1 5 5 N 1.32269 * 119.67539 * 359.72524 * 4 3 2 6 6 C 1.31933 * 121.66093 * 179.71105 * 5 4 3 7 7 C 1.38175 * 120.81702 * 0.56484 * 6 5 4 8 8 Br 1.89102 * 120.36846 * 179.74407 * 7 6 5 9 9 C 1.38858 * 119.26804 * 359.72716 * 7 6 5 10 10 C 1.38420 * 118.47754 * 359.97438 * 9 7 6 11 11 C 1.50703 * 120.43697 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.46997 * 259.97811 * 11 10 9 13 13 C 1.46896 * 110.99986 * 66.04350 * 12 11 10 14 14 C 1.46897 * 111.00166 * 190.00273 * 12 11 10 15 15 C 1.50698 * 109.47407 * 169.99824 * 14 12 11 16 16 H 1.08000 * 119.99486 * 0.02562 * 15 14 12 17 17 C 1.37873 * 120.00069 * 179.97438 * 15 14 12 18 18 N 1.31513 * 119.99885 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99941 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47431 * 60.00029 * 19 17 15 21 21 H 1.48501 * 109.47228 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47261 * 299.99910 * 19 17 15 23 23 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 26 26 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 27 27 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 28 28 H 1.07995 * 119.59597 * 180.27053 * 6 5 4 29 29 H 1.08003 * 120.76183 * 180.02562 * 9 7 6 30 30 H 1.09002 * 109.47240 * 19.97673 * 11 10 9 31 31 H 1.08996 * 109.47034 * 139.97905 * 11 10 9 32 32 H 1.09007 * 109.46748 * 60.00595 * 13 12 11 33 33 H 1.09005 * 109.47085 * 179.97438 * 13 12 11 34 34 H 1.09001 * 109.47884 * 300.00422 * 13 12 11 35 35 H 1.09005 * 109.46990 * 290.00304 * 14 12 11 36 36 H 1.09001 * 109.46928 * 49.99651 * 14 12 11 37 37 H 0.97008 * 119.99750 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3515 1.5250 -0.0005 5 7 4.1513 0.4715 0.0045 6 6 5.4644 0.5989 -0.0015 7 6 6.0544 1.8483 -0.0016 8 35 7.9380 2.0161 -0.0029 9 6 5.2490 2.9794 -0.0011 10 6 3.8750 2.8113 -0.0010 11 6 2.9594 4.0082 -0.0011 12 7 2.4705 4.2508 1.3628 13 6 3.5689 4.6509 2.2524 14 6 1.3976 5.2541 1.3668 15 6 0.7567 5.2988 2.7300 16 1 1.1113 4.6473 3.5150 17 6 -0.2816 6.1721 2.9753 18 7 -0.7131 6.9658 2.0195 19 14 -1.0755 6.2280 4.6653 20 1 -0.0542 6.5909 5.6803 21 1 -2.1603 7.2422 4.6693 22 1 -1.6438 4.8949 4.9896 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 6.0860 -0.2843 -0.0015 29 1 5.6845 3.9677 -0.0016 30 1 3.5057 4.8836 -0.3522 31 1 2.1136 3.8186 -0.6619 32 1 4.0253 5.5668 1.8767 33 1 3.1791 4.8246 3.2554 34 1 4.3171 3.8590 2.2850 35 1 1.8144 6.2328 1.1290 36 1 0.6481 4.9876 0.6216 37 1 -1.4439 7.5799 2.1920 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238438663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:19 Heat of formation + Delta-G solvation = -17.737847 kcal Electronic energy + Delta-G solvation = -20170.765533 eV Core-core repulsion = 16994.042440 eV Total energy + Delta-G solvation = -3176.723094 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.88317 -39.13853 -38.29906 -34.95833 -33.94399 -33.47072 -32.18078 -30.09256 -29.18737 -28.24956 -25.93181 -25.16197 -23.38050 -23.13983 -21.82737 -19.52815 -18.51747 -18.19511 -17.37148 -16.82090 -16.48052 -16.05097 -15.80489 -15.54722 -15.03762 -14.96037 -14.62511 -14.16165 -13.83720 -13.57784 -13.47005 -13.37935 -13.06614 -12.94795 -12.65513 -12.55610 -12.35686 -12.31541 -12.19102 -11.84260 -11.51578 -11.44797 -11.36207 -10.75260 -10.71652 -10.58940 -9.37436 -8.99800 -8.18747 -6.28430 -0.11565 0.02164 0.51886 1.41345 1.44312 1.52212 2.06172 2.40113 2.50534 3.13692 3.14238 3.41982 3.71316 3.72918 3.83438 4.10804 4.14204 4.20370 4.41265 4.44933 4.52261 4.65628 4.67824 4.78469 4.80167 4.91868 4.96753 5.06292 5.18335 5.19505 5.27571 5.30715 5.65015 6.05369 6.23528 6.32421 6.59676 6.65455 6.86437 7.40719 8.91995 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.014493 B = 0.003672 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.454648 B = 7623.184109 C = 9023.149707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.306 6.306 4 C 0.344 3.656 5 N -0.542 5.542 6 C 0.172 3.828 7 C -0.187 4.187 8 Br -0.020 7.020 9 C -0.007 4.007 10 C -0.147 4.147 11 C 0.110 3.890 12 N -0.540 5.540 13 C 0.044 3.956 14 C 0.212 3.788 15 C -0.522 4.522 16 H 0.059 0.941 17 C 0.005 3.995 18 N -0.933 5.933 19 Si 0.966 3.034 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.270 1.270 23 H 0.061 0.939 24 H 0.106 0.894 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.195 0.805 29 H 0.159 0.841 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.018 0.982 33 H 0.056 0.944 34 H 0.065 0.935 35 H -0.034 1.034 36 H 0.003 0.997 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.386 -14.503 -6.302 22.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 O -0.212 6.212 4 C 0.165 3.835 5 N -0.267 5.267 6 C 0.014 3.986 7 C -0.269 4.269 8 Br 0.064 6.936 9 C -0.034 4.034 10 C -0.151 4.151 11 C -0.018 4.018 12 N -0.264 5.264 13 C -0.105 4.105 14 C 0.086 3.914 15 C -0.560 4.560 16 H 0.078 0.922 17 C -0.194 4.194 18 N -0.574 5.574 19 Si 0.791 3.209 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.195 1.195 23 H 0.080 0.920 24 H 0.125 0.875 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.212 0.788 29 H 0.177 0.823 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.084 0.916 35 H -0.016 1.016 36 H 0.021 0.979 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.099 -15.384 -6.156 23.102 hybrid contribution -0.436 1.747 0.351 1.834 sum 15.662 -13.637 -5.805 21.563 Atomic orbital electron populations 1.21825 0.91988 1.04065 1.02770 1.22804 0.95822 0.80038 1.02471 1.86427 1.16564 1.31968 1.86282 1.19846 0.84476 0.89571 0.89603 1.67560 1.06334 1.32194 1.20587 1.22898 0.88931 0.96687 0.90114 1.22687 0.92759 0.96629 1.14863 1.96714 1.00378 1.98535 1.97927 1.21462 0.90724 0.99653 0.91546 1.19840 0.94242 0.93305 1.07720 1.20704 0.96420 0.93295 0.91428 1.62001 1.10305 1.46571 1.07515 1.22174 0.92884 0.97805 0.97613 1.19345 0.88551 0.86925 0.96553 1.21387 1.16933 1.20245 0.97443 0.92237 1.25852 0.97342 0.94979 1.01178 1.70075 1.28339 1.24341 1.34615 0.85484 0.78059 0.77971 0.79393 1.19251 1.20728 1.19534 0.92009 0.87533 0.93064 0.90744 0.91755 0.78808 0.82297 0.93703 0.91232 0.96314 0.92502 0.91621 1.01592 0.97859 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 10.28 71.98 0.74 -2.75 16 2 C 0.06 1.67 6.03 71.98 0.43 2.10 16 3 O -0.31 -10.53 9.37 -90.07 -0.84 -11.37 16 4 C 0.34 11.02 7.47 84.78 0.63 11.66 16 5 N -0.54 -14.89 9.21 -308.87 -2.85 -17.74 16 6 C 0.17 3.77 10.94 84.66 0.93 4.70 16 7 C -0.19 -4.12 6.25 22.40 0.14 -3.98 16 8 Br -0.02 -0.35 33.73 -20.37 -0.69 -1.04 16 9 C -0.01 -0.17 8.67 22.46 0.19 0.02 16 10 C -0.15 -4.61 4.59 -19.67 -0.09 -4.70 16 11 C 0.11 4.07 4.78 85.56 0.41 4.48 16 12 N -0.54 -23.95 4.74 -931.64 -4.42 -28.37 16 13 C 0.04 1.71 9.10 127.69 1.16 2.87 16 14 C 0.21 11.47 4.72 85.56 0.40 11.88 16 15 C -0.52 -29.95 8.46 25.60 0.22 -29.74 16 16 H 0.06 3.38 7.12 -2.91 -0.02 3.36 16 17 C 0.00 0.26 5.46 84.65 0.46 0.72 16 18 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 19 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.07 1.72 8.11 -2.39 -0.02 1.70 16 27 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 28 H 0.20 2.92 8.06 -2.91 -0.02 2.90 16 29 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 30 H 0.04 1.55 8.01 -2.39 -0.02 1.53 16 31 H 0.07 2.75 7.66 -2.39 -0.02 2.73 16 32 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.06 2.43 6.76 -2.38 -0.02 2.41 16 34 H 0.07 2.24 6.66 -2.39 -0.02 2.22 16 35 H -0.03 -1.94 8.12 -2.38 -0.02 -1.96 16 36 H 0.00 0.19 7.93 -2.39 -0.02 0.17 16 37 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -65.73 333.40 0.20 -65.53 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 1.06 Total: 5.19 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 5.63 Total: -2.73 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -6.98 Total: -102.20 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.84 Total: -11.37 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -0.69 Total: -1.04 kcal Total: -65.73 0.20 -65.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238438663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.793 kcal (2) G-P(sol) polarization free energy of solvation -65.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds