Wall clock time and date at job start Tue Mar 31 2020 15:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30811 * 1 3 3 Si 1.86802 * 120.00056 * 2 1 4 4 H 1.48501 * 109.47122 * 275.38488 * 3 2 1 5 5 H 1.48503 * 109.46996 * 35.38457 * 3 2 1 6 6 H 1.48504 * 109.47175 * 155.38771 * 3 2 1 7 7 C 1.39982 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99823 * 342.19471 * 7 2 1 9 9 C 1.40998 * 120.00614 * 162.19161 * 7 2 1 10 10 C 1.40973 * 120.10930 * 329.43818 * 9 7 2 11 11 C 1.36201 * 119.87987 * 180.02562 * 10 9 7 12 12 C 1.40015 * 120.11611 * 0.02562 * 11 10 9 13 13 C 1.47879 * 119.88402 * 179.97438 * 12 11 10 14 14 C 1.39839 * 120.17581 * 244.71983 * 13 12 11 15 15 F 1.35103 * 120.08860 * 0.02870 * 14 13 12 16 16 C 1.38186 * 119.82087 * 179.79025 * 14 13 12 17 17 C 1.38354 * 120.17466 * 0.48888 * 16 14 13 18 18 C 1.38356 * 120.35743 * 359.74442 * 17 16 14 19 19 C 1.38185 * 120.17526 * 0.02562 * 18 17 16 20 20 F 1.35102 * 120.08661 * 179.97438 * 19 18 17 21 21 C 1.39976 * 120.22984 * 359.75053 * 12 11 10 22 22 C 1.36241 * 120.11422 * 0.50023 * 21 12 11 23 23 C 1.50695 * 120.05712 * 179.77877 * 22 21 12 24 24 F 1.39898 * 109.47089 * 359.72141 * 23 22 21 25 25 F 1.39898 * 109.46882 * 239.72359 * 23 22 21 26 26 F 1.39895 * 109.47242 * 119.72232 * 23 22 21 27 27 H 0.97005 * 119.99665 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.05938 * 0.02562 * 10 9 7 29 29 H 1.07992 * 119.94363 * 180.02562 * 11 10 9 30 30 H 1.08002 * 119.91124 * 180.23203 * 16 14 13 31 31 H 1.07997 * 119.81905 * 179.72020 * 17 16 14 32 32 H 1.08001 * 119.91233 * 179.97438 * 18 17 16 33 33 H 1.07993 * 119.93968 * 180.28139 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3759 2.1121 -1.3939 5 1 1.5011 2.6172 0.8108 6 1 3.5920 1.4100 0.5831 7 6 2.0081 -1.2122 -0.0005 8 1 1.5069 -2.1254 0.2851 9 6 3.3674 -1.2414 -0.3740 10 6 3.8632 -0.3130 -1.3118 11 6 5.1770 -0.3457 -1.6696 12 6 6.0345 -1.2996 -1.1081 13 6 7.4599 -1.3308 -1.5006 14 6 7.9774 -2.4374 -2.1812 15 9 7.1761 -3.4824 -2.4832 16 6 9.3095 -2.4570 -2.5483 17 6 10.1328 -1.3901 -2.2354 18 6 9.6296 -0.2937 -1.5580 19 6 8.2988 -0.2566 -1.1880 20 9 7.8094 0.8147 -0.5261 21 6 5.5482 -2.2206 -0.1729 22 6 4.2346 -2.1997 0.1879 23 6 3.7114 -3.1951 1.1911 24 9 4.7525 -4.0348 1.6013 25 9 2.6987 -3.9607 0.6035 26 9 3.1975 -2.5138 2.2996 27 1 -0.4850 0.8401 0.0004 28 1 3.2025 0.4228 -1.7458 29 1 5.5580 0.3652 -2.3876 30 1 9.7098 -3.3093 -3.0773 31 1 11.1741 -1.4134 -2.5212 32 1 10.2789 0.5350 -1.3170 33 1 6.2148 -2.9514 0.2607 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239573221.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:32 Heat of formation + Delta-G solvation = -204.005548 kcal Electronic energy + Delta-G solvation = -27834.332936 eV Core-core repulsion = 23045.323103 eV Total energy + Delta-G solvation = -4789.009833 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.16751 -48.66854 -48.64619 -46.74934 -46.53128 -38.88852 -37.85091 -34.17756 -32.31207 -30.90958 -30.19934 -29.45199 -26.03741 -24.55110 -22.68388 -22.59170 -21.51622 -20.37755 -18.02916 -17.90599 -17.45508 -17.42779 -17.21579 -16.85258 -15.76199 -15.60014 -15.45773 -15.36656 -14.98287 -14.25112 -14.19607 -14.13606 -13.88146 -13.58806 -13.48594 -13.11911 -12.93119 -12.78751 -12.75957 -12.63942 -12.58878 -12.23038 -11.83888 -11.83411 -11.60874 -11.34588 -11.09236 -10.88838 -10.60782 -10.17751 -9.90792 -9.44348 -8.78500 -8.65982 -8.25546 -7.77232 -7.30353 -4.88352 1.05543 1.08888 2.12463 2.33018 2.92730 3.04605 3.14996 3.47043 3.74273 3.77772 4.06799 4.08702 4.56849 4.73372 4.85029 4.88442 5.01254 5.05912 5.15984 5.25760 5.57041 5.73264 5.82883 5.91013 6.08618 6.11217 6.11892 6.20300 6.36175 6.48183 6.78722 6.85814 6.98463 7.17382 7.30240 7.46911 7.68563 7.98683 8.20099 8.38571 9.68032 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.005365 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.104270 B = 5217.787082 C = 6455.740500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.085 3.915 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.237 1.237 7 C -0.418 4.418 8 H 0.106 0.894 9 C 0.127 3.873 10 C -0.230 4.230 11 C -0.022 4.022 12 C -0.220 4.220 13 C -0.063 4.063 14 C 0.126 3.874 15 F -0.125 7.125 16 C -0.167 4.167 17 C -0.080 4.080 18 C -0.168 4.168 19 C 0.125 3.875 20 F -0.126 7.126 21 C 0.009 3.991 22 C -0.293 4.293 23 C 0.522 3.478 24 F -0.199 7.199 25 F -0.186 7.186 26 F -0.181 7.181 27 H 0.294 0.706 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.781 -0.021 -3.014 14.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.139 4.139 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.160 1.160 7 C -0.444 4.444 8 H 0.124 0.876 9 C 0.123 3.877 10 C -0.249 4.249 11 C -0.041 4.041 12 C -0.221 4.221 13 C -0.065 4.065 14 C 0.106 3.894 15 F -0.104 7.104 16 C -0.186 4.186 17 C -0.098 4.098 18 C -0.187 4.187 19 C 0.106 3.894 20 F -0.105 7.105 21 C -0.009 4.009 22 C -0.296 4.296 23 C 0.469 3.531 24 F -0.181 7.181 25 F -0.167 7.167 26 F -0.163 7.163 27 H 0.105 0.895 28 H 0.129 0.871 29 H 0.119 0.881 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.381 0.033 -2.940 13.700 hybrid contribution -0.181 0.532 0.180 0.590 sum 13.200 0.565 -2.761 13.497 Atomic orbital electron populations 1.69664 1.08355 1.31314 1.30083 1.26333 0.94858 1.02256 0.90446 0.86287 0.81784 0.78914 0.79408 1.18994 1.21024 1.15992 1.19886 0.92785 0.96981 1.34728 0.87585 1.17292 0.92320 0.89350 0.88729 1.20644 0.95652 1.04795 1.03830 1.20404 0.93050 0.94710 0.95916 1.17473 0.90103 1.05347 1.09168 1.18888 0.94933 0.92767 0.99905 1.17639 0.88281 0.85260 0.98173 1.91533 1.73349 1.54741 1.90752 1.21086 0.92043 1.01089 1.04419 1.20733 0.99730 0.92066 0.97290 1.21080 0.93800 1.00837 1.02954 1.17637 0.91468 0.84884 0.95436 1.91528 1.88412 1.52707 1.77817 1.20113 0.93390 0.94498 0.92899 1.19190 0.95287 1.06775 1.08319 1.18189 0.74545 0.79745 0.80647 1.93048 1.59210 1.74128 1.91665 1.93128 1.61989 1.77478 1.84114 1.93151 1.87606 1.79826 1.55668 0.89548 0.87079 0.88105 0.84523 0.84541 0.84556 0.87345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.17 13.93 55.55 0.77 -18.40 16 2 C 0.09 2.09 5.40 -17.33 -0.09 2.00 16 3 Si 0.91 19.48 24.52 -169.99 -4.17 15.31 16 4 H -0.26 -5.38 6.71 56.52 0.38 -5.00 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.24 -5.29 6.86 56.52 0.39 -4.90 16 7 C -0.42 -10.74 8.23 -37.88 -0.31 -11.05 16 8 H 0.11 2.89 6.34 -52.48 -0.33 2.56 16 9 C 0.13 3.11 5.08 -106.80 -0.54 2.56 16 10 C -0.23 -5.25 7.09 -39.28 -0.28 -5.53 16 11 C -0.02 -0.47 9.49 -39.65 -0.38 -0.84 16 12 C -0.22 -4.49 4.74 -104.63 -0.50 -4.99 16 13 C -0.06 -1.09 5.31 -104.75 -0.56 -1.65 16 14 C 0.13 1.95 7.24 -39.00 -0.28 1.67 16 15 F -0.13 -2.15 16.68 2.25 0.04 -2.11 16 16 C -0.17 -1.96 10.01 -39.56 -0.40 -2.35 16 17 C -0.08 -0.80 10.04 -39.50 -0.40 -1.20 16 18 C -0.17 -1.96 10.01 -39.56 -0.40 -2.35 16 19 C 0.13 1.94 7.24 -39.00 -0.28 1.66 16 20 F -0.13 -2.16 16.68 2.25 0.04 -2.12 16 21 C 0.01 0.20 8.88 -39.65 -0.35 -0.15 16 22 C -0.29 -6.80 5.38 -104.33 -0.56 -7.36 16 23 C 0.52 11.65 2.84 36.00 0.10 11.75 16 24 F -0.20 -4.05 15.95 2.25 0.04 -4.01 16 25 F -0.19 -4.23 15.66 2.25 0.04 -4.20 16 26 F -0.18 -4.15 16.55 2.25 0.04 -4.11 16 27 H 0.29 6.49 8.30 -40.82 -0.34 6.15 16 28 H 0.11 2.46 4.78 -52.49 -0.25 2.21 16 29 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.11 2.15 7.11 -52.49 -0.37 1.77 16 LS Contribution 306.39 15.07 4.62 4.62 Total: -1.00 -26.28 306.39 -5.63 -31.91 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -1.82 Total: 0.95 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -5.22 Total: -17.83 kcal Atomic # 7 Polarization: -19.17 SS G_CDS: 0.77 Total: -18.40 kcal Atomic # 9 Polarization: -16.74 SS G_CDS: 0.18 Total: -16.56 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.17 Total: 15.31 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -26.28 -5.63 -31.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239573221.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.094 kcal (2) G-P(sol) polarization free energy of solvation -26.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds