Wall clock time and date at job start Tue Mar 31 2020 15:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30811 * 1 3 3 Si 1.86802 * 120.00056 * 2 1 4 4 H 1.48501 * 109.47122 * 275.38488 * 3 2 1 5 5 H 1.48503 * 109.46996 * 35.38457 * 3 2 1 6 6 H 1.48504 * 109.47175 * 155.38771 * 3 2 1 7 7 C 1.39982 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99823 * 342.19471 * 7 2 1 9 9 C 1.40998 * 120.00614 * 162.19161 * 7 2 1 10 10 C 1.40973 * 120.10930 * 329.43818 * 9 7 2 11 11 C 1.36201 * 119.87987 * 180.02562 * 10 9 7 12 12 C 1.40015 * 120.11611 * 0.02562 * 11 10 9 13 13 C 1.47879 * 119.88402 * 179.97438 * 12 11 10 14 14 C 1.39839 * 120.17581 * 244.71983 * 13 12 11 15 15 F 1.35103 * 120.08860 * 0.02870 * 14 13 12 16 16 C 1.38186 * 119.82087 * 179.79025 * 14 13 12 17 17 C 1.38354 * 120.17466 * 0.48888 * 16 14 13 18 18 C 1.38356 * 120.35743 * 359.74442 * 17 16 14 19 19 C 1.38185 * 120.17526 * 0.02562 * 18 17 16 20 20 F 1.35102 * 120.08661 * 179.97438 * 19 18 17 21 21 C 1.39976 * 120.22984 * 359.75053 * 12 11 10 22 22 C 1.36241 * 120.11422 * 0.50023 * 21 12 11 23 23 C 1.50695 * 120.05712 * 179.77877 * 22 21 12 24 24 F 1.39898 * 109.47089 * 359.72141 * 23 22 21 25 25 F 1.39898 * 109.46882 * 239.72359 * 23 22 21 26 26 F 1.39895 * 109.47242 * 119.72232 * 23 22 21 27 27 H 0.97005 * 119.99665 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.05938 * 0.02562 * 10 9 7 29 29 H 1.07992 * 119.94363 * 180.02562 * 11 10 9 30 30 H 1.08002 * 119.91124 * 180.23203 * 16 14 13 31 31 H 1.07997 * 119.81905 * 179.72020 * 17 16 14 32 32 H 1.08001 * 119.91233 * 179.97438 * 18 17 16 33 33 H 1.07993 * 119.93968 * 180.28139 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3759 2.1121 -1.3939 5 1 1.5011 2.6172 0.8108 6 1 3.5920 1.4100 0.5831 7 6 2.0081 -1.2122 -0.0005 8 1 1.5069 -2.1254 0.2851 9 6 3.3674 -1.2414 -0.3740 10 6 3.8632 -0.3130 -1.3118 11 6 5.1770 -0.3457 -1.6696 12 6 6.0345 -1.2996 -1.1081 13 6 7.4599 -1.3308 -1.5006 14 6 7.9774 -2.4374 -2.1812 15 9 7.1761 -3.4824 -2.4832 16 6 9.3095 -2.4570 -2.5483 17 6 10.1328 -1.3901 -2.2354 18 6 9.6296 -0.2937 -1.5580 19 6 8.2988 -0.2566 -1.1880 20 9 7.8094 0.8147 -0.5261 21 6 5.5482 -2.2206 -0.1729 22 6 4.2346 -2.1997 0.1879 23 6 3.7114 -3.1951 1.1911 24 9 4.7525 -4.0348 1.6013 25 9 2.6987 -3.9607 0.6035 26 9 3.1975 -2.5138 2.2996 27 1 -0.4850 0.8401 0.0004 28 1 3.2025 0.4228 -1.7458 29 1 5.5580 0.3652 -2.3876 30 1 9.7098 -3.3093 -3.0773 31 1 11.1741 -1.4134 -2.5212 32 1 10.2789 0.5350 -1.3170 33 1 6.2148 -2.9514 0.2607 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239573221.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:32 Heat of formation + Delta-G solvation = -215.931743 kcal Electronic energy + Delta-G solvation = -27834.850095 eV Core-core repulsion = 23045.323103 eV Total energy + Delta-G solvation = -4789.526992 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.97517 -49.88264 -49.86192 -48.52706 -48.37946 -40.32060 -39.19880 -35.91425 -33.83153 -32.65423 -31.20597 -30.89829 -27.71559 -26.22089 -24.14111 -23.69994 -23.08848 -22.01625 -19.74137 -19.29297 -19.28118 -19.19332 -18.67136 -18.01461 -17.33589 -16.89218 -16.78706 -16.50612 -16.22791 -15.97796 -15.76901 -15.48743 -15.39566 -15.28477 -15.20305 -14.90769 -14.63687 -14.61805 -14.56162 -14.20336 -13.90896 -13.62314 -13.33562 -13.04274 -12.91647 -12.79468 -12.67145 -12.53007 -12.22757 -11.82589 -11.68433 -11.17988 -10.09994 -9.96976 -9.68345 -9.39413 -9.10931 -6.75186 -0.05786 0.07249 0.38843 0.61223 1.20418 1.34067 1.43010 1.95193 2.02117 2.31482 2.49495 2.98666 3.06725 3.13541 3.34934 3.53976 3.69999 3.73625 3.95196 4.01651 4.07064 4.26120 4.29627 4.60453 4.71698 4.86567 5.00064 5.02702 5.10139 5.13797 5.25117 5.26863 5.40399 5.55347 5.69253 5.89497 5.92049 6.10522 6.39078 6.52950 7.94454 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.005365 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.104270 B = 5217.787082 C = 6455.740500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.057 3.943 3 Si 0.957 3.043 4 H -0.246 1.246 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.457 4.457 8 H 0.074 0.926 9 C 0.115 3.885 10 C -0.241 4.241 11 C -0.027 4.027 12 C -0.197 4.197 13 C -0.103 4.103 14 C 0.106 3.894 15 F -0.144 7.144 16 C -0.154 4.154 17 C -0.054 4.054 18 C -0.154 4.154 19 C 0.107 3.893 20 F -0.143 7.143 21 C -0.004 4.004 22 C -0.307 4.307 23 C 0.524 3.476 24 F -0.186 7.186 25 F -0.192 7.192 26 F -0.187 7.187 27 H 0.303 0.697 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.168 0.832 31 H 0.188 0.812 32 H 0.169 0.831 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.395 0.869 -4.436 18.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.164 4.164 3 Si 0.779 3.221 4 H -0.170 1.170 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.484 4.484 8 H 0.092 0.908 9 C 0.111 3.889 10 C -0.260 4.260 11 C -0.045 4.045 12 C -0.199 4.199 13 C -0.105 4.105 14 C 0.087 3.913 15 F -0.122 7.122 16 C -0.173 4.173 17 C -0.071 4.071 18 C -0.172 4.172 19 C 0.087 3.913 20 F -0.122 7.122 21 C -0.022 4.022 22 C -0.310 4.310 23 C 0.470 3.530 24 F -0.168 7.168 25 F -0.173 7.173 26 F -0.169 7.169 27 H 0.115 0.885 28 H 0.133 0.867 29 H 0.145 0.855 30 H 0.185 0.815 31 H 0.205 0.795 32 H 0.186 0.814 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 17.993 0.915 -4.369 18.539 hybrid contribution -1.225 0.133 0.539 1.344 sum 16.768 1.049 -3.831 17.232 Atomic orbital electron populations 1.69670 1.09220 1.32516 1.32118 1.26894 0.95388 1.04220 0.89858 0.85605 0.79801 0.76285 0.80398 1.17019 1.19466 1.17823 1.19734 0.93775 0.96625 1.38269 0.90823 1.17470 0.92100 0.90226 0.89089 1.20789 0.96680 1.04799 1.03712 1.20764 0.92420 0.95284 0.96054 1.17928 0.92241 1.03128 1.06560 1.18833 0.93445 0.95040 1.03166 1.17948 0.89711 0.84394 0.99287 1.91491 1.74191 1.55461 1.91064 1.21506 0.90170 1.02543 1.03050 1.21359 1.01606 0.89968 0.94189 1.21504 0.92141 1.02231 1.01343 1.17925 0.92935 0.84018 0.96387 1.91489 1.88875 1.53393 1.78400 1.20362 0.92854 0.95487 0.93488 1.19440 0.96092 1.06850 1.08616 1.18145 0.74594 0.79806 0.80466 1.93061 1.58483 1.73694 1.91521 1.93110 1.62402 1.77579 1.84244 1.93131 1.87767 1.80040 1.55913 0.88545 0.86658 0.85507 0.81454 0.79491 0.81382 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.10 13.93 21.83 0.30 -41.79 16 2 C 0.06 2.89 5.40 85.27 0.46 3.35 16 3 Si 0.96 40.61 24.52 68.60 1.68 42.30 16 4 H -0.25 -9.56 6.71 99.48 0.67 -8.89 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.25 -11.38 6.86 99.48 0.68 -10.70 16 7 C -0.46 -24.86 8.23 23.37 0.19 -24.67 16 8 H 0.07 4.35 6.34 -2.91 -0.02 4.33 16 9 C 0.11 5.81 5.08 -21.27 -0.11 5.70 16 10 C -0.24 -11.11 7.09 22.47 0.16 -10.95 16 11 C -0.03 -1.11 9.49 22.23 0.21 -0.90 16 12 C -0.20 -7.95 4.74 -19.87 -0.09 -8.04 16 13 C -0.10 -3.35 5.31 -19.95 -0.11 -3.46 16 14 C 0.11 3.00 7.24 22.65 0.16 3.16 16 15 F -0.14 -4.73 16.68 44.97 0.75 -3.98 16 16 C -0.15 -2.81 10.01 22.29 0.22 -2.59 16 17 C -0.05 -0.72 10.04 22.33 0.22 -0.49 16 18 C -0.15 -2.76 10.01 22.29 0.22 -2.54 16 19 C 0.11 2.99 7.24 22.64 0.16 3.15 16 20 F -0.14 -4.62 16.68 44.97 0.75 -3.87 16 21 C 0.00 -0.16 8.88 22.23 0.20 0.04 16 22 C -0.31 -14.70 5.38 -19.67 -0.11 -14.80 16 23 C 0.52 24.22 2.84 71.23 0.20 24.43 16 24 F -0.19 -7.66 15.95 44.97 0.72 -6.95 16 25 F -0.19 -9.21 15.66 44.97 0.70 -8.51 16 26 F -0.19 -8.96 16.55 44.97 0.74 -8.21 16 27 H 0.30 13.88 8.30 -92.70 -0.77 13.12 16 28 H 0.12 5.12 4.78 -2.91 -0.01 5.11 16 29 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 30 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 31 H 0.19 0.78 8.06 -2.91 -0.02 0.76 16 32 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 33 H 0.12 4.81 7.11 -2.91 -0.02 4.79 16 Total: -1.00 -61.35 306.39 8.80 -52.55 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.14 Total: 7.08 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: 2.01 Total: -28.61 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.30 Total: -41.79 kcal Atomic # 9 Polarization: -35.19 SS G_CDS: 3.67 Total: -31.52 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 1.68 Total: 42.30 kcal Total: -61.35 8.80 -52.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239573221.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.386 kcal (2) G-P(sol) polarization free energy of solvation -61.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds