Wall clock time and date at job start Tue Mar 31 2020 15:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86794 * 120.00203 * 2 1 4 4 H 1.48505 * 109.47413 * 274.96315 * 3 2 1 5 5 H 1.48497 * 109.47126 * 34.96241 * 3 2 1 6 6 H 1.48499 * 109.47427 * 154.96635 * 3 2 1 7 7 C 1.40057 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99754 * 163.57176 * 7 2 1 9 9 C 1.40849 * 119.99821 * 343.57748 * 7 2 1 10 10 C 1.40753 * 120.33751 * 334.12263 * 9 7 2 11 11 C 1.36412 * 119.98995 * 179.97438 * 10 9 7 12 12 C 1.38946 * 120.70186 * 0.27601 * 11 10 9 13 13 C 1.50704 * 119.66131 * 179.72524 * 12 11 10 14 14 F 1.39902 * 109.46863 * 359.97438 * 13 12 11 15 15 F 1.39903 * 109.46924 * 119.99897 * 13 12 11 16 16 F 1.39895 * 109.47152 * 240.00141 * 13 12 11 17 17 C 1.38043 * 120.68079 * 359.44237 * 12 11 10 18 18 C 1.39225 * 119.97753 * 0.55214 * 17 12 11 19 19 C 1.47766 * 120.34373 * 179.70104 * 18 17 12 20 20 C 1.39886 * 120.18052 * 269.75437 * 19 18 17 21 21 F 1.35100 * 120.09325 * 359.97438 * 20 19 18 22 22 C 1.38175 * 119.81390 * 179.81368 * 20 19 18 23 23 C 1.38360 * 120.17742 * 0.43219 * 22 20 19 24 24 C 1.38355 * 120.37260 * 359.79642 * 23 22 20 25 25 C 1.38170 * 120.17853 * 359.97438 * 24 23 22 26 26 F 1.35096 * 120.09434 * 179.97438 * 25 24 23 27 27 H 0.97000 * 120.00127 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00331 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.64310 * 180.02562 * 11 10 9 30 30 H 1.08001 * 120.00907 * 180.25957 * 17 12 11 31 31 H 1.08000 * 119.90975 * 180.20732 * 22 20 19 32 32 H 1.08005 * 119.81154 * 179.76552 * 23 22 20 33 33 H 1.07999 * 119.91337 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6176 0.0000 4 1 2.3845 2.1070 -1.3948 5 1 1.4958 2.6200 0.8023 6 1 3.5880 1.4121 0.5924 7 6 2.0081 -1.2129 0.0005 8 1 3.0551 -1.2321 -0.2640 9 6 1.3469 -2.4077 0.3459 10 6 0.2158 -2.3778 1.1831 11 6 -0.4195 -3.5391 1.5126 12 6 0.0410 -4.7599 1.0348 13 6 -0.6751 -6.0291 1.4188 14 9 -1.7563 -5.7208 2.2514 15 9 -1.1417 -6.6685 0.2652 16 9 0.2081 -6.8761 2.0967 17 6 1.1442 -4.8216 0.2074 18 6 1.8142 -3.6537 -0.1470 19 6 2.9999 -3.7110 -1.0269 20 6 4.2784 -3.8485 -0.4761 21 9 4.4338 -3.9288 0.8635 22 6 5.3816 -3.9051 -1.3062 23 6 5.2250 -3.8174 -2.6781 24 6 3.9644 -3.6766 -3.2307 25 6 2.8504 -3.6230 -2.4150 26 9 1.6204 -3.4849 -2.9564 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1497 -1.4354 1.5637 29 1 -1.2872 -3.5096 2.1550 30 1 1.4903 -5.7760 -0.1611 31 1 6.3690 -4.0146 -0.8828 32 1 6.0917 -3.8585 -3.3212 33 1 3.8508 -3.6084 -4.3025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239574770.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:42 Heat of formation + Delta-G solvation = -208.726172 kcal Electronic energy + Delta-G solvation = -27835.111412 eV Core-core repulsion = 23045.896877 eV Total energy + Delta-G solvation = -4789.214535 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.36467 -48.37716 -48.30266 -46.90862 -46.83286 -38.63798 -37.47635 -34.17760 -32.20049 -30.37046 -29.91942 -28.41339 -26.86478 -23.90986 -23.00028 -22.25709 -21.12540 -20.22403 -17.82580 -17.70541 -17.64659 -17.45810 -17.23499 -16.57842 -15.61705 -15.45518 -15.28121 -15.07487 -14.65417 -14.29133 -13.93647 -13.84564 -13.78747 -13.61842 -13.39432 -13.33568 -13.10697 -13.05566 -12.71416 -12.32222 -12.30892 -11.93681 -11.58394 -11.54553 -11.49885 -11.29862 -11.14480 -10.89482 -10.66338 -10.11288 -9.82303 -9.51431 -8.36057 -8.28601 -7.85366 -7.79504 -7.14090 -4.78789 1.39099 1.41969 2.31228 2.62975 2.89214 2.90245 2.97049 3.58361 3.67496 3.76848 4.18796 4.38064 4.84524 4.85825 4.94874 5.00333 5.03329 5.27429 5.31597 5.50382 5.52332 5.92969 6.07527 6.20766 6.39211 6.42202 6.45935 6.49036 6.68808 6.80106 6.93912 7.16510 7.20986 7.33819 7.59428 7.66543 7.86027 8.22286 8.46423 8.54234 9.77562 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.009782 B = 0.006264 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.766085 B = 4468.908844 C = 6119.799618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.431 4.431 8 H 0.084 0.916 9 C 0.152 3.848 10 C -0.160 4.160 11 C -0.055 4.055 12 C -0.318 4.318 13 C 0.516 3.484 14 F -0.191 7.191 15 F -0.194 7.194 16 F -0.194 7.194 17 C -0.004 4.004 18 C -0.199 4.199 19 C -0.047 4.047 20 C 0.130 3.870 21 F -0.127 7.127 22 C -0.174 4.174 23 C -0.080 4.080 24 C -0.174 4.174 25 C 0.139 3.861 26 F -0.124 7.124 27 H 0.289 0.711 28 H 0.128 0.872 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.887 -3.231 -2.864 7.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.458 4.458 8 H 0.102 0.898 9 C 0.149 3.851 10 C -0.179 4.179 11 C -0.074 4.074 12 C -0.320 4.320 13 C 0.462 3.538 14 F -0.173 7.173 15 F -0.176 7.176 16 F -0.176 7.176 17 C -0.023 4.023 18 C -0.201 4.201 19 C -0.049 4.049 20 C 0.110 3.890 21 F -0.106 7.106 22 C -0.193 4.193 23 C -0.098 4.098 24 C -0.193 4.193 25 C 0.119 3.881 26 F -0.102 7.102 27 H 0.101 0.899 28 H 0.145 0.855 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.599 -3.092 -2.832 6.995 hybrid contribution -0.088 0.539 0.134 0.562 sum 5.511 -2.553 -2.698 6.646 Atomic orbital electron populations 1.69779 1.07818 1.30367 1.30821 1.26084 0.94859 1.01953 0.91771 0.86210 0.80949 0.79806 0.79594 1.19026 1.19477 1.17907 1.19685 0.97838 0.90876 1.37357 0.89795 1.17588 0.90054 0.90754 0.86717 1.20965 0.98932 0.96884 1.01146 1.20212 0.97963 0.91552 0.97642 1.18886 1.05430 0.90816 1.16861 1.18525 0.76435 0.85104 0.73703 1.93065 1.57835 1.93124 1.73236 1.93132 1.89512 1.84333 1.50594 1.93126 1.69150 1.74262 1.81053 1.20107 0.92441 0.96250 0.93454 1.18012 1.00170 0.93888 1.08013 1.18717 0.93084 1.01259 0.91856 1.17668 0.92840 1.00883 0.77603 1.91506 1.96149 1.93206 1.29697 1.21017 0.97994 1.06429 0.93844 1.20674 0.96559 0.98659 0.93904 1.21041 0.91702 1.06222 1.00288 1.17629 0.80283 0.99847 0.90325 1.91523 1.40531 1.92578 1.85599 0.89948 0.85456 0.87815 0.88402 0.84802 0.84796 0.84773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.01 10.96 55.55 0.61 -17.41 16 2 C 0.08 1.73 5.16 -17.32 -0.09 1.65 16 3 Si 0.91 17.17 29.59 -169.99 -5.03 12.14 16 4 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 6 H -0.26 -4.82 7.11 56.52 0.40 -4.41 16 7 C -0.43 -10.48 8.49 -37.91 -0.32 -10.81 16 8 H 0.08 2.01 7.28 -52.48 -0.38 1.63 16 9 C 0.15 3.78 5.58 -106.55 -0.59 3.19 16 10 C -0.16 -3.90 8.63 -39.29 -0.34 -4.24 16 11 C -0.05 -1.25 9.35 -39.98 -0.37 -1.62 16 12 C -0.32 -7.08 5.39 -104.43 -0.56 -7.64 16 13 C 0.52 10.44 3.31 36.01 0.12 10.56 16 14 F -0.19 -3.73 15.93 2.25 0.04 -3.69 16 15 F -0.19 -3.88 17.23 2.25 0.04 -3.84 16 16 F -0.19 -3.82 17.23 2.25 0.04 -3.79 16 17 C 0.00 -0.09 9.29 -39.29 -0.37 -0.46 16 18 C -0.20 -4.64 4.66 -104.23 -0.49 -5.12 16 19 C -0.05 -0.97 4.06 -104.77 -0.43 -1.40 16 20 C 0.13 2.39 7.29 -38.99 -0.28 2.10 16 21 F -0.13 -2.51 16.83 2.25 0.04 -2.47 16 22 C -0.17 -2.50 10.01 -39.56 -0.40 -2.89 16 23 C -0.08 -1.01 10.04 -39.49 -0.40 -1.41 16 24 C -0.17 -2.54 10.01 -39.56 -0.40 -2.94 16 25 C 0.14 2.63 7.29 -38.99 -0.28 2.34 16 26 F -0.12 -2.59 16.83 2.25 0.04 -2.55 16 27 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 28 H 0.13 3.12 6.20 -52.49 -0.33 2.79 16 29 H 0.10 2.15 7.12 -52.48 -0.37 1.78 16 30 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 31 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 33 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 315.59 15.07 4.76 4.76 Total: -1.00 -25.80 315.59 -6.58 -32.38 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -1.91 Total: 3.16 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -5.20 Total: -18.69 kcal Atomic # 7 Polarization: -18.01 SS G_CDS: 0.61 Total: -17.41 kcal Atomic # 9 Polarization: -16.53 SS G_CDS: 0.19 Total: -16.34 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -25.80 -6.58 -32.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239574770.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.345 kcal (2) G-P(sol) polarization free energy of solvation -25.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds