Wall clock time and date at job start Tue Mar 31 2020 15:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86794 * 120.00203 * 2 1 4 4 H 1.48505 * 109.47413 * 274.96315 * 3 2 1 5 5 H 1.48497 * 109.47126 * 34.96241 * 3 2 1 6 6 H 1.48499 * 109.47427 * 154.96635 * 3 2 1 7 7 C 1.40057 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99754 * 163.57176 * 7 2 1 9 9 C 1.40849 * 119.99821 * 343.57748 * 7 2 1 10 10 C 1.40753 * 120.33751 * 334.12263 * 9 7 2 11 11 C 1.36412 * 119.98995 * 179.97438 * 10 9 7 12 12 C 1.38946 * 120.70186 * 0.27601 * 11 10 9 13 13 C 1.50704 * 119.66131 * 179.72524 * 12 11 10 14 14 F 1.39902 * 109.46863 * 359.97438 * 13 12 11 15 15 F 1.39903 * 109.46924 * 119.99897 * 13 12 11 16 16 F 1.39895 * 109.47152 * 240.00141 * 13 12 11 17 17 C 1.38043 * 120.68079 * 359.44237 * 12 11 10 18 18 C 1.39225 * 119.97753 * 0.55214 * 17 12 11 19 19 C 1.47766 * 120.34373 * 179.70104 * 18 17 12 20 20 C 1.39886 * 120.18052 * 269.75437 * 19 18 17 21 21 F 1.35100 * 120.09325 * 359.97438 * 20 19 18 22 22 C 1.38175 * 119.81390 * 179.81368 * 20 19 18 23 23 C 1.38360 * 120.17742 * 0.43219 * 22 20 19 24 24 C 1.38355 * 120.37260 * 359.79642 * 23 22 20 25 25 C 1.38170 * 120.17853 * 359.97438 * 24 23 22 26 26 F 1.35096 * 120.09434 * 179.97438 * 25 24 23 27 27 H 0.97000 * 120.00127 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00331 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.64310 * 180.02562 * 11 10 9 30 30 H 1.08001 * 120.00907 * 180.25957 * 17 12 11 31 31 H 1.08000 * 119.90975 * 180.20732 * 22 20 19 32 32 H 1.08005 * 119.81154 * 179.76552 * 23 22 20 33 33 H 1.07999 * 119.91337 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6176 0.0000 4 1 2.3845 2.1070 -1.3948 5 1 1.4958 2.6200 0.8023 6 1 3.5880 1.4121 0.5924 7 6 2.0081 -1.2129 0.0005 8 1 3.0551 -1.2321 -0.2640 9 6 1.3469 -2.4077 0.3459 10 6 0.2158 -2.3778 1.1831 11 6 -0.4195 -3.5391 1.5126 12 6 0.0410 -4.7599 1.0348 13 6 -0.6751 -6.0291 1.4188 14 9 -1.7563 -5.7208 2.2514 15 9 -1.1417 -6.6685 0.2652 16 9 0.2081 -6.8761 2.0967 17 6 1.1442 -4.8216 0.2074 18 6 1.8142 -3.6537 -0.1470 19 6 2.9999 -3.7110 -1.0269 20 6 4.2784 -3.8485 -0.4761 21 9 4.4338 -3.9288 0.8635 22 6 5.3816 -3.9051 -1.3062 23 6 5.2250 -3.8174 -2.6781 24 6 3.9644 -3.6766 -3.2307 25 6 2.8504 -3.6230 -2.4150 26 9 1.6204 -3.4849 -2.9564 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1497 -1.4354 1.5637 29 1 -1.2872 -3.5096 2.1550 30 1 1.4903 -5.7760 -0.1611 31 1 6.3690 -4.0146 -0.8828 32 1 6.0917 -3.8585 -3.3212 33 1 3.8508 -3.6084 -4.3025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239574770.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:42 Heat of formation + Delta-G solvation = -218.566249 kcal Electronic energy + Delta-G solvation = -27835.538110 eV Core-core repulsion = 23045.896877 eV Total energy + Delta-G solvation = -4789.641233 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.00612 -49.81235 -49.78425 -48.53609 -48.47094 -40.15664 -38.96369 -35.93285 -33.72888 -32.12753 -31.15618 -29.96757 -28.60092 -25.59444 -24.46864 -23.54571 -22.87541 -21.82646 -19.49043 -19.34605 -19.21475 -19.13711 -18.73260 -17.95324 -17.29032 -16.82596 -16.70134 -16.45766 -16.13656 -15.93091 -15.64005 -15.41779 -15.27485 -15.09351 -15.01386 -14.96403 -14.74452 -14.68388 -14.33323 -14.01303 -13.67359 -13.52946 -13.13676 -13.02232 -12.87218 -12.77997 -12.61613 -12.46764 -12.20904 -11.80111 -11.52930 -11.22442 -9.68212 -9.63508 -9.62425 -9.56934 -8.85863 -6.60408 0.12962 0.15440 0.54449 0.83508 1.33569 1.40336 1.49519 1.91229 2.10652 2.44512 2.52916 3.08142 3.14662 3.29926 3.31210 3.60190 3.71527 3.83795 4.02111 4.14838 4.17541 4.33809 4.43565 4.91164 4.99669 5.00510 5.12042 5.14733 5.16848 5.17858 5.29009 5.43311 5.53070 5.75383 5.84269 5.97574 6.06416 6.40951 6.66869 6.73726 8.09124 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.009782 B = 0.006264 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.766085 B = 4468.908844 C = 6119.799618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.039 3.961 3 Si 0.979 3.021 4 H -0.258 1.258 5 H -0.260 1.260 6 H -0.256 1.256 7 C -0.453 4.453 8 H 0.080 0.920 9 C 0.124 3.876 10 C -0.183 4.183 11 C -0.059 4.059 12 C -0.326 4.326 13 C 0.525 3.475 14 F -0.185 7.185 15 F -0.191 7.191 16 F -0.189 7.189 17 C -0.019 4.019 18 C -0.202 4.202 19 C -0.084 4.084 20 C 0.102 3.898 21 F -0.145 7.145 22 C -0.158 4.158 23 C -0.057 4.057 24 C -0.159 4.159 25 C 0.105 3.895 26 F -0.147 7.147 27 H 0.298 0.702 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.169 0.831 32 H 0.190 0.810 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.300 -3.096 -4.282 9.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.181 4.181 3 Si 0.799 3.201 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.179 1.179 7 C -0.479 4.479 8 H 0.098 0.902 9 C 0.120 3.880 10 C -0.202 4.202 11 C -0.077 4.077 12 C -0.328 4.328 13 C 0.472 3.528 14 F -0.166 7.166 15 F -0.172 7.172 16 F -0.170 7.170 17 C -0.038 4.038 18 C -0.203 4.203 19 C -0.085 4.085 20 C 0.083 3.917 21 F -0.123 7.123 22 C -0.176 4.176 23 C -0.075 4.075 24 C -0.178 4.178 25 C 0.086 3.914 26 F -0.126 7.126 27 H 0.109 0.891 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.127 0.873 31 H 0.187 0.813 32 H 0.207 0.793 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.001 -2.978 -4.247 9.535 hybrid contribution -0.785 0.407 0.517 1.024 sum 7.216 -2.572 -3.730 8.520 Atomic orbital electron populations 1.69810 1.09126 1.31729 1.31184 1.26898 0.95542 1.04797 0.90846 0.85210 0.79455 0.75565 0.79889 1.18263 1.18360 1.17928 1.19813 0.97783 0.91743 1.38605 0.90230 1.17965 0.90671 0.91979 0.87360 1.20980 0.99899 0.97078 1.02252 1.20390 0.98254 0.91412 0.97666 1.19125 1.05531 0.91620 1.16570 1.18162 0.76422 0.84409 0.73841 1.93076 1.57459 1.93091 1.73013 1.93136 1.89440 1.84136 1.50528 1.93134 1.69070 1.73929 1.80912 1.20363 0.92778 0.96787 0.93833 1.18395 1.00972 0.93419 1.07511 1.18780 0.93046 1.04263 0.92442 1.18012 0.93458 1.02790 0.77425 1.91454 1.96196 1.93606 1.31067 1.21480 0.98039 1.03844 0.94244 1.21318 0.97346 0.95137 0.93658 1.21477 0.90936 1.03898 1.01484 1.18039 0.80780 1.02193 0.90386 1.91455 1.42234 1.93122 1.85765 0.89065 0.86437 0.86250 0.87276 0.81328 0.79304 0.81620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.59 10.96 21.85 0.24 -38.35 16 2 C 0.04 1.81 5.16 85.29 0.44 2.25 16 3 Si 0.98 35.20 29.59 68.60 2.03 37.23 16 4 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 5 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 6 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 7 C -0.45 -22.88 8.49 23.35 0.20 -22.68 16 8 H 0.08 3.95 7.28 -2.91 -0.02 3.93 16 9 C 0.12 6.43 5.58 -21.11 -0.12 6.31 16 10 C -0.18 -9.36 8.63 22.46 0.19 -9.16 16 11 C -0.06 -2.76 9.35 22.01 0.21 -2.55 16 12 C -0.33 -14.88 5.39 -19.74 -0.11 -14.98 16 13 C 0.53 21.20 3.31 71.24 0.24 21.44 16 14 F -0.18 -7.12 15.93 44.97 0.72 -6.41 16 15 F -0.19 -7.56 17.23 44.97 0.77 -6.78 16 16 F -0.19 -7.35 17.23 44.97 0.77 -6.58 16 17 C -0.02 -0.89 9.29 22.46 0.21 -0.68 16 18 C -0.20 -9.77 4.66 -19.61 -0.09 -9.86 16 19 C -0.08 -3.49 4.06 -19.96 -0.08 -3.57 16 20 C 0.10 3.73 7.29 22.65 0.17 3.89 16 21 F -0.14 -5.80 16.83 44.97 0.76 -5.05 16 22 C -0.16 -3.98 10.01 22.28 0.22 -3.75 16 23 C -0.06 -1.16 10.04 22.33 0.22 -0.94 16 24 C -0.16 -4.17 10.01 22.28 0.22 -3.95 16 25 C 0.11 3.97 7.29 22.65 0.17 4.13 16 26 F -0.15 -6.33 16.83 44.97 0.76 -5.57 16 27 H 0.30 12.87 8.30 -92.71 -0.77 12.10 16 28 H 0.12 6.10 6.20 -2.91 -0.02 6.08 16 29 H 0.12 5.07 7.12 -2.91 -0.02 5.05 16 30 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 31 H 0.17 3.07 8.06 -2.91 -0.02 3.04 16 32 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.17 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -59.68 315.59 9.33 -50.34 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 1.20 Total: 15.26 kcal Atomic # 6 Polarization: -36.19 SS G_CDS: 2.09 Total: -34.10 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.24 Total: -38.35 kcal Atomic # 9 Polarization: -34.16 SS G_CDS: 3.78 Total: -30.38 kcal Atomic # 14 Polarization: 35.20 SS G_CDS: 2.03 Total: 37.23 kcal Total: -59.68 9.33 -50.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239574770.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.221 kcal (2) G-P(sol) polarization free energy of solvation -59.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds