Wall clock time and date at job start Tue Mar 31 2020 15:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30811 * 1 3 3 Si 1.86796 * 119.99867 * 2 1 4 4 H 1.48505 * 109.47410 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46973 * 120.00612 * 3 2 1 6 6 H 1.48499 * 109.47413 * 240.00298 * 3 2 1 7 7 C 1.39997 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99918 * 154.59858 * 7 2 1 9 9 C 1.41015 * 119.99948 * 334.59860 * 7 2 1 10 10 C 1.40955 * 120.11246 * 334.26282 * 9 7 2 11 11 C 1.36225 * 119.87352 * 179.75948 * 10 9 7 12 12 C 1.39981 * 120.11917 * 0.49363 * 11 10 9 13 13 C 1.47943 * 119.88168 * 179.74049 * 12 11 10 14 14 C 1.39651 * 120.10988 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.92570 * 180.02562 * 14 13 12 16 16 C 1.38597 * 120.14729 * 0.02562 * 15 14 13 17 17 F 1.35098 * 119.89269 * 179.97438 * 16 15 14 18 18 C 1.38837 * 120.21460 * 359.97059 * 16 15 14 19 19 F 1.35110 * 119.96345 * 180.02562 * 18 16 15 20 20 C 1.38082 * 120.07577 * 359.76724 * 18 16 15 21 21 C 1.39942 * 120.23466 * 359.75905 * 12 11 10 22 22 C 1.36255 * 120.11998 * 359.97438 * 21 12 11 23 23 C 1.50693 * 120.06164 * 179.97438 * 22 21 12 24 24 F 1.39904 * 109.47218 * 0.02562 * 23 22 21 25 25 F 1.39901 * 109.47189 * 120.02232 * 23 22 21 26 26 F 1.39904 * 109.47423 * 240.02464 * 23 22 21 27 27 H 0.97000 * 119.99901 * 174.16795 * 1 2 3 28 28 H 1.07998 * 120.06183 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.93580 * 180.25384 * 11 10 9 30 30 H 1.07998 * 120.03757 * 359.97438 * 14 13 12 31 31 H 1.08000 * 119.92959 * 180.02562 * 15 14 13 32 32 H 1.07997 * 120.07573 * 180.27519 * 20 18 16 33 33 H 1.07996 * 119.94116 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 1.2771 2.7465 0.0006 5 1 3.0959 1.6963 1.2124 6 1 3.0958 1.6965 -1.2125 7 6 2.0081 -1.2124 -0.0005 8 1 3.0098 -1.2574 -0.4018 9 6 1.4053 -2.3748 0.5228 10 6 0.3944 -2.2688 1.4994 11 6 -0.1881 -3.3948 1.9981 12 6 0.2228 -4.6556 1.5499 13 6 -0.4094 -5.8752 2.0992 14 6 -1.4147 -5.7699 3.0628 15 6 -2.0009 -6.9090 3.5725 16 6 -1.5943 -8.1583 3.1311 17 9 -2.1719 -9.2710 3.6345 18 6 -0.5955 -8.2699 2.1733 19 9 -0.2034 -9.4903 1.7462 20 6 -0.0060 -7.1349 1.6527 21 6 1.2296 -4.7666 0.5843 22 6 1.8150 -3.6466 0.0750 23 6 2.8995 -3.7677 -0.9643 24 9 3.1293 -5.1193 -1.2432 25 9 2.5002 -3.1117 -2.1336 26 9 4.0759 -3.1847 -0.4810 27 1 -0.4850 -0.8357 -0.0854 28 1 0.0793 -1.2966 1.8485 29 1 -0.9655 -3.3145 2.7434 30 1 -1.7320 -4.7973 3.4089 31 1 -2.7786 -6.8276 4.3175 32 1 0.7678 -7.2216 0.9044 33 1 1.5432 -5.7418 0.2422 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239584649.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:21 Heat of formation + Delta-G solvation = -215.922049 kcal Electronic energy + Delta-G solvation = -27056.966015 eV Core-core repulsion = 22267.439443 eV Total energy + Delta-G solvation = -4789.526572 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.31574 -49.23864 -48.31722 -46.89474 -46.68981 -39.22910 -37.73860 -34.59627 -31.89213 -31.19641 -30.13893 -28.68182 -26.02377 -24.81115 -23.05596 -22.70456 -21.01515 -20.49255 -18.70227 -17.87054 -17.62432 -17.60370 -17.31016 -16.66894 -16.07274 -16.06375 -15.38111 -14.75897 -14.63733 -14.47901 -14.23439 -14.05632 -13.80469 -13.69481 -13.57663 -13.27466 -13.07168 -13.02162 -12.94736 -12.72246 -12.52455 -12.19092 -12.10402 -11.88580 -11.50356 -11.24559 -11.10830 -10.87322 -10.64405 -10.16366 -9.95381 -9.54655 -9.04715 -8.77372 -8.41613 -7.80064 -7.54533 -5.01238 0.95220 1.22790 2.18534 2.38345 2.93189 2.98197 3.14002 3.62684 3.64295 3.66847 4.02127 4.18943 4.54353 4.72045 4.81322 4.82752 4.96983 5.10370 5.24824 5.33626 5.44100 5.64237 5.78196 5.96217 6.08796 6.14705 6.23717 6.33459 6.48665 6.58483 6.82043 6.94629 7.09426 7.17461 7.23990 7.40792 7.53290 7.67154 8.07647 8.21525 9.46706 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.017065 B = 0.003750 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.357882 B = 7464.337349 C = 8835.381286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.036 3.964 3 Si 1.066 2.934 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.465 4.465 8 H 0.094 0.906 9 C 0.124 3.876 10 C -0.211 4.211 11 C -0.038 4.038 12 C -0.225 4.225 13 C 0.047 3.953 14 C -0.129 4.129 15 C -0.110 4.110 16 C 0.017 3.983 17 F -0.141 7.141 18 C 0.083 3.917 19 F -0.136 7.136 20 C -0.160 4.160 21 C 0.006 3.994 22 C -0.307 4.307 23 C 0.521 3.479 24 F -0.198 7.198 25 F -0.183 7.183 26 F -0.188 7.188 27 H 0.306 0.694 28 H 0.117 0.883 29 H 0.105 0.895 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.825 -4.103 2.954 5.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.190 4.190 3 Si 0.887 3.113 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.490 4.490 8 H 0.112 0.888 9 C 0.120 3.880 10 C -0.230 4.230 11 C -0.056 4.056 12 C -0.226 4.226 13 C 0.047 3.953 14 C -0.147 4.147 15 C -0.129 4.129 16 C -0.003 4.003 17 F -0.120 7.120 18 C 0.063 3.937 19 F -0.115 7.115 20 C -0.179 4.179 21 C -0.012 4.012 22 C -0.310 4.310 23 C 0.468 3.532 24 F -0.180 7.180 25 F -0.164 7.164 26 F -0.170 7.170 27 H 0.121 0.879 28 H 0.135 0.865 29 H 0.123 0.877 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.077 -2.547 2.967 4.056 hybrid contribution 0.313 -2.279 -0.249 2.314 sum -0.764 -4.826 2.718 5.591 Atomic orbital electron populations 1.70475 1.08260 1.35125 1.23559 1.27387 0.95533 1.04999 0.91124 0.83596 0.75862 0.72972 0.78841 1.19213 1.19279 1.19362 1.21164 1.03217 0.93903 1.30724 0.88765 1.17298 0.90372 0.90819 0.89560 1.20844 1.02923 0.97809 1.01398 1.20554 0.96603 0.91783 0.96668 1.17710 1.05982 0.90871 1.08036 1.18717 0.92362 0.91938 0.92282 1.21115 0.97306 0.98260 0.98055 1.20879 1.00983 0.90073 1.00919 1.17576 0.98671 0.83609 1.00442 1.91458 1.83373 1.50837 1.86305 1.17556 0.97490 0.80948 0.97747 1.91489 1.89959 1.41307 1.88740 1.21095 1.03191 0.90226 1.03397 1.20277 0.92196 0.96424 0.92297 1.19209 1.07796 0.96025 1.07944 1.18256 0.81737 0.71902 0.81342 1.93054 1.95361 1.34999 1.94572 1.93150 1.90671 1.81367 1.51256 1.93116 1.51331 1.84425 1.88106 0.87933 0.86524 0.87698 0.84493 0.84400 0.84088 0.87158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.01 12.31 55.55 0.68 -16.33 16 2 C 0.04 0.79 4.93 -17.33 -0.09 0.70 16 3 Si 1.07 18.57 30.00 -169.99 -5.10 13.47 16 4 H -0.27 -4.62 7.11 56.52 0.40 -4.22 16 5 H -0.27 -4.50 7.11 56.52 0.40 -4.10 16 6 H -0.27 -4.53 7.11 56.52 0.40 -4.12 16 7 C -0.47 -10.65 7.73 -37.87 -0.29 -10.94 16 8 H 0.09 2.16 6.08 -52.49 -0.32 1.85 16 9 C 0.12 2.81 5.28 -106.80 -0.56 2.25 16 10 C -0.21 -4.47 7.88 -39.28 -0.31 -4.78 16 11 C -0.04 -0.71 9.36 -39.65 -0.37 -1.08 16 12 C -0.22 -4.23 5.90 -104.63 -0.62 -4.85 16 13 C 0.05 0.78 5.88 -104.88 -0.62 0.17 16 14 C -0.13 -1.84 9.42 -39.19 -0.37 -2.21 16 15 C -0.11 -1.46 10.01 -39.58 -0.40 -1.85 16 16 C 0.02 0.26 7.31 -39.23 -0.29 -0.03 16 17 F -0.14 -2.16 17.17 2.25 0.04 -2.12 16 18 C 0.08 1.31 7.30 -39.42 -0.29 1.02 16 19 F -0.14 -2.20 17.18 2.25 0.04 -2.17 16 20 C -0.16 -2.56 9.40 -39.13 -0.37 -2.93 16 21 C 0.01 0.12 8.75 -39.66 -0.35 -0.22 16 22 C -0.31 -6.65 5.38 -104.32 -0.56 -7.21 16 23 C 0.52 10.85 2.82 36.00 0.10 10.95 16 24 F -0.20 -3.81 15.95 2.25 0.04 -3.77 16 25 F -0.18 -3.94 16.48 2.25 0.04 -3.90 16 26 F -0.19 -3.93 15.67 2.25 0.04 -3.89 16 27 H 0.31 7.06 6.69 -40.82 -0.27 6.78 16 28 H 0.12 2.50 6.49 -52.49 -0.34 2.16 16 29 H 0.11 1.67 6.17 -52.49 -0.32 1.35 16 30 H 0.14 1.72 6.18 -52.49 -0.32 1.39 16 31 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.14 2.15 6.18 -52.49 -0.32 1.82 16 33 H 0.11 1.98 5.23 -52.49 -0.27 1.71 16 LS Contribution 304.53 15.07 4.59 4.59 Total: -1.00 -23.11 304.53 -6.41 -29.52 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -1.40 Total: 5.63 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -5.37 Total: -21.03 kcal Atomic # 7 Polarization: -17.01 SS G_CDS: 0.68 Total: -16.33 kcal Atomic # 9 Polarization: -16.04 SS G_CDS: 0.19 Total: -15.85 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.10 Total: 13.47 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -23.11 -6.41 -29.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239584649.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.399 kcal (2) G-P(sol) polarization free energy of solvation -23.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds