Wall clock time and date at job start Tue Mar 31 2020 15:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30811 * 1 3 3 Si 1.86796 * 119.99867 * 2 1 4 4 H 1.48505 * 109.47410 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46973 * 120.00612 * 3 2 1 6 6 H 1.48499 * 109.47413 * 240.00298 * 3 2 1 7 7 C 1.39997 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99918 * 154.59858 * 7 2 1 9 9 C 1.41015 * 119.99948 * 334.59860 * 7 2 1 10 10 C 1.40955 * 120.11246 * 334.26282 * 9 7 2 11 11 C 1.36225 * 119.87352 * 179.75948 * 10 9 7 12 12 C 1.39981 * 120.11917 * 0.49363 * 11 10 9 13 13 C 1.47943 * 119.88168 * 179.74049 * 12 11 10 14 14 C 1.39651 * 120.10988 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.92570 * 180.02562 * 14 13 12 16 16 C 1.38597 * 120.14729 * 0.02562 * 15 14 13 17 17 F 1.35098 * 119.89269 * 179.97438 * 16 15 14 18 18 C 1.38837 * 120.21460 * 359.97059 * 16 15 14 19 19 F 1.35110 * 119.96345 * 180.02562 * 18 16 15 20 20 C 1.38082 * 120.07577 * 359.76724 * 18 16 15 21 21 C 1.39942 * 120.23466 * 359.75905 * 12 11 10 22 22 C 1.36255 * 120.11998 * 359.97438 * 21 12 11 23 23 C 1.50693 * 120.06164 * 179.97438 * 22 21 12 24 24 F 1.39904 * 109.47218 * 0.02562 * 23 22 21 25 25 F 1.39901 * 109.47189 * 120.02232 * 23 22 21 26 26 F 1.39904 * 109.47423 * 240.02464 * 23 22 21 27 27 H 0.97000 * 119.99901 * 174.16795 * 1 2 3 28 28 H 1.07998 * 120.06183 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.93580 * 180.25384 * 11 10 9 30 30 H 1.07998 * 120.03757 * 359.97438 * 14 13 12 31 31 H 1.08000 * 119.92959 * 180.02562 * 15 14 13 32 32 H 1.07997 * 120.07573 * 180.27519 * 20 18 16 33 33 H 1.07996 * 119.94116 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 1.2771 2.7465 0.0006 5 1 3.0959 1.6963 1.2124 6 1 3.0958 1.6965 -1.2125 7 6 2.0081 -1.2124 -0.0005 8 1 3.0098 -1.2574 -0.4018 9 6 1.4053 -2.3748 0.5228 10 6 0.3944 -2.2688 1.4994 11 6 -0.1881 -3.3948 1.9981 12 6 0.2228 -4.6556 1.5499 13 6 -0.4094 -5.8752 2.0992 14 6 -1.4147 -5.7699 3.0628 15 6 -2.0009 -6.9090 3.5725 16 6 -1.5943 -8.1583 3.1311 17 9 -2.1719 -9.2710 3.6345 18 6 -0.5955 -8.2699 2.1733 19 9 -0.2034 -9.4903 1.7462 20 6 -0.0060 -7.1349 1.6527 21 6 1.2296 -4.7666 0.5843 22 6 1.8150 -3.6466 0.0750 23 6 2.8995 -3.7677 -0.9643 24 9 3.1293 -5.1193 -1.2432 25 9 2.5002 -3.1117 -2.1336 26 9 4.0759 -3.1847 -0.4810 27 1 -0.4850 -0.8357 -0.0854 28 1 0.0793 -1.2966 1.8485 29 1 -0.9655 -3.3145 2.7434 30 1 -1.7320 -4.7973 3.4089 31 1 -2.7786 -6.8276 4.3175 32 1 0.7678 -7.2216 0.9044 33 1 1.5432 -5.7418 0.2422 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239584649.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:21 Heat of formation + Delta-G solvation = -222.695831 kcal Electronic energy + Delta-G solvation = -27057.259748 eV Core-core repulsion = 22267.439443 eV Total energy + Delta-G solvation = -4789.820305 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.97099 -50.47337 -49.55145 -48.52512 -48.37834 -40.63098 -39.15423 -36.14221 -33.38140 -32.57338 -31.48886 -30.12915 -27.58620 -26.35457 -24.40793 -24.04753 -22.50616 -21.98313 -20.29172 -19.28176 -19.26944 -19.16476 -18.66146 -17.93942 -17.45570 -17.30420 -16.87135 -16.10202 -15.99298 -15.91798 -15.62592 -15.46720 -15.36691 -15.16721 -14.97874 -14.91112 -14.67675 -14.62766 -14.45012 -14.27326 -13.92194 -13.59242 -13.48690 -13.35065 -12.96359 -12.65654 -12.50318 -12.22177 -11.99112 -11.68273 -11.47936 -11.07407 -10.41987 -10.03784 -9.96793 -9.43222 -9.01471 -6.67078 -0.34212 0.04387 0.57929 0.88333 1.51542 1.60100 1.80197 1.97565 2.24579 2.29145 2.71091 2.81674 3.16729 3.21861 3.31864 3.36494 3.58935 3.78313 3.80726 4.01949 4.11649 4.20044 4.36054 4.74055 4.78959 4.83766 4.90297 4.91769 5.06673 5.19197 5.25937 5.49931 5.52919 5.60229 5.81585 5.86215 5.93455 6.08046 6.46435 6.60075 7.81222 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.017065 B = 0.003750 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.357882 B = 7464.337349 C = 8835.381286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.012 3.988 3 Si 1.108 2.892 4 H -0.265 1.265 5 H -0.259 1.259 6 H -0.262 1.262 7 C -0.506 4.506 8 H 0.082 0.918 9 C 0.107 3.893 10 C -0.226 4.226 11 C -0.033 4.033 12 C -0.210 4.210 13 C 0.025 3.975 14 C -0.114 4.114 15 C -0.098 4.098 16 C 0.022 3.978 17 F -0.141 7.141 18 C 0.066 3.934 19 F -0.141 7.141 20 C -0.157 4.157 21 C -0.008 4.008 22 C -0.326 4.326 23 C 0.522 3.478 24 F -0.189 7.189 25 F -0.190 7.190 26 F -0.191 7.191 27 H 0.294 0.706 28 H 0.109 0.891 29 H 0.140 0.860 30 H 0.161 0.839 31 H 0.176 0.824 32 H 0.143 0.857 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.077 -5.102 4.642 7.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.210 4.210 3 Si 0.925 3.075 4 H -0.189 1.189 5 H -0.183 1.183 6 H -0.186 1.186 7 C -0.531 4.531 8 H 0.100 0.900 9 C 0.103 3.897 10 C -0.245 4.245 11 C -0.051 4.051 12 C -0.211 4.211 13 C 0.025 3.975 14 C -0.132 4.132 15 C -0.116 4.116 16 C 0.002 3.998 17 F -0.120 7.120 18 C 0.046 3.954 19 F -0.120 7.120 20 C -0.176 4.176 21 C -0.026 4.026 22 C -0.329 4.329 23 C 0.469 3.531 24 F -0.170 7.170 25 F -0.172 7.172 26 F -0.172 7.172 27 H 0.107 0.893 28 H 0.127 0.873 29 H 0.158 0.842 30 H 0.178 0.822 31 H 0.193 0.807 32 H 0.160 0.840 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.329 -3.575 4.657 6.316 hybrid contribution 0.571 -2.361 -0.639 2.511 sum -1.758 -5.936 4.019 7.380 Atomic orbital electron populations 1.70566 1.08699 1.34147 1.26287 1.28435 0.95579 1.07210 0.89738 0.83092 0.75088 0.69974 0.79379 1.18867 1.18314 1.18647 1.21159 1.03281 0.95062 1.33619 0.89968 1.17601 0.90931 0.91276 0.89917 1.20869 1.03477 0.98398 1.01773 1.20897 0.96648 0.90945 0.96634 1.18010 1.04631 0.91920 1.06502 1.18683 0.93933 0.90955 0.93964 1.21395 0.95656 0.99771 0.96375 1.21220 1.01008 0.88601 1.00770 1.17854 0.97909 0.84333 0.99657 1.91469 1.83250 1.51079 1.86182 1.17675 0.98319 0.80763 0.98596 1.91478 1.90117 1.41512 1.88908 1.21133 1.03002 0.90272 1.03167 1.20523 0.92669 0.96558 0.92864 1.19414 1.08477 0.96430 1.08548 1.18221 0.81648 0.72166 0.81090 1.93061 1.95305 1.34158 1.94502 1.93129 1.90763 1.81632 1.51642 1.93103 1.51436 1.84571 1.88129 0.89332 0.87312 0.84229 0.82168 0.80707 0.83959 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -36.10 12.31 21.84 0.27 -35.83 16 2 C 0.01 0.53 4.93 85.27 0.42 0.95 16 3 Si 1.11 38.04 30.00 68.60 2.06 40.10 16 4 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 5 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 6 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 7 C -0.51 -24.05 7.73 23.38 0.18 -23.87 16 8 H 0.08 3.96 6.08 -2.91 -0.02 3.95 16 9 C 0.11 4.96 5.28 -21.28 -0.11 4.85 16 10 C -0.23 -9.65 7.88 22.47 0.18 -9.47 16 11 C -0.03 -1.19 9.36 22.22 0.21 -0.98 16 12 C -0.21 -7.50 5.90 -19.87 -0.12 -7.61 16 13 C 0.03 0.75 5.88 -20.03 -0.12 0.63 16 14 C -0.11 -2.74 9.42 22.53 0.21 -2.52 16 15 C -0.10 -2.11 10.01 22.27 0.22 -1.89 16 16 C 0.02 0.60 7.31 22.50 0.16 0.76 16 17 F -0.14 -3.84 17.17 44.97 0.77 -3.07 16 18 C 0.07 1.94 7.30 22.38 0.16 2.11 16 19 F -0.14 -4.33 17.18 44.97 0.77 -3.55 16 20 C -0.16 -4.66 9.40 22.56 0.21 -4.45 16 21 C -0.01 -0.32 8.75 22.22 0.19 -0.12 16 22 C -0.33 -14.31 5.38 -19.67 -0.11 -14.42 16 23 C 0.52 22.15 2.82 71.23 0.20 22.35 16 24 F -0.19 -7.23 15.95 44.97 0.72 -6.52 16 25 F -0.19 -8.42 16.48 44.97 0.74 -7.68 16 26 F -0.19 -8.17 15.67 44.97 0.70 -7.46 16 27 H 0.29 14.07 6.69 -92.71 -0.62 13.45 16 28 H 0.11 4.76 6.49 -2.91 -0.02 4.74 16 29 H 0.14 3.95 6.17 -2.91 -0.02 3.93 16 30 H 0.16 3.12 6.18 -2.91 -0.02 3.11 16 31 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.14 4.11 6.18 -2.91 -0.02 4.10 16 33 H 0.13 4.38 5.23 -2.91 -0.02 4.36 16 Total: -1.00 -50.53 304.53 9.31 -41.22 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 1.37 Total: 16.48 kcal Atomic # 6 Polarization: -35.59 SS G_CDS: 1.90 Total: -33.69 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.27 Total: -35.83 kcal Atomic # 9 Polarization: -31.99 SS G_CDS: 3.71 Total: -28.28 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.06 Total: 40.10 kcal Total: -50.53 9.31 -41.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239584649.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.475 kcal (2) G-P(sol) polarization free energy of solvation -50.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds