Wall clock time and date at job start Tue Mar 31 2020 15:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30780 * 1 3 3 Si 1.86793 * 120.00033 * 2 1 4 4 H 1.48502 * 109.47173 * 240.00257 * 3 2 1 5 5 H 1.48500 * 109.47526 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46951 * 120.00313 * 3 2 1 7 7 C 1.40060 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00109 * 164.25370 * 7 2 1 9 9 C 1.40873 * 119.99937 * 344.24745 * 7 2 1 10 10 C 1.40753 * 120.33145 * 333.77150 * 9 7 2 11 11 C 1.36423 * 119.98918 * 179.97438 * 10 9 7 12 12 C 1.38946 * 120.68890 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.65954 * 179.97438 * 12 11 10 14 14 F 1.39894 * 109.47330 * 0.02562 * 13 12 11 15 15 F 1.39906 * 109.46735 * 120.00045 * 13 12 11 16 16 F 1.39897 * 109.47310 * 239.99886 * 13 12 11 17 17 C 1.38064 * 120.67760 * 359.71795 * 12 11 10 18 18 C 1.39197 * 119.97796 * 0.55937 * 17 12 11 19 19 C 1.47836 * 120.33374 * 179.72165 * 18 17 12 20 20 C 1.39701 * 120.11170 * 309.72263 * 19 18 17 21 21 C 1.37873 * 119.91742 * 180.02562 * 20 19 18 22 22 C 1.38608 * 120.14922 * 0.25207 * 21 20 19 23 23 F 1.35100 * 119.88245 * 179.74218 * 22 21 20 24 24 C 1.38840 * 120.22564 * 359.49508 * 22 21 20 25 25 F 1.35102 * 119.95702 * 180.23439 * 24 22 21 26 26 C 1.38070 * 120.08306 * 0.50607 * 24 22 21 27 27 H 0.96996 * 120.00120 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.00846 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.65946 * 180.02562 * 11 10 9 30 30 H 1.07999 * 120.01200 * 180.27874 * 17 12 11 31 31 H 1.07994 * 120.04218 * 359.97438 * 20 19 18 32 32 H 1.07999 * 119.92204 * 179.97438 * 21 20 19 33 33 H 1.08000 * 120.07967 * 179.73191 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 3.0955 1.6964 -1.2125 5 1 1.2769 2.7465 0.0006 6 1 3.0956 1.6963 1.2125 7 6 2.0081 -1.2130 -0.0005 8 1 3.0576 -1.2305 -0.2544 9 6 1.3433 -2.4102 0.3301 10 6 0.2081 -2.3865 1.1619 11 6 -0.4306 -3.5500 1.4773 12 6 0.0276 -4.7662 0.9857 13 6 -0.6954 -6.0375 1.3493 14 9 -1.7802 -5.7359 2.1795 15 9 -1.1586 -6.6598 0.1851 16 9 0.1811 -6.8969 2.0203 17 6 1.1352 -4.8214 0.1634 18 6 1.8117 -3.6519 -0.1716 19 6 3.0023 -3.7025 -1.0465 20 6 4.0401 -4.5948 -0.7669 21 6 5.1488 -4.6383 -1.5853 22 6 5.2383 -3.7951 -2.6817 23 9 6.3295 -3.8386 -3.4771 24 6 4.2081 -2.9095 -2.9683 25 9 4.2989 -2.0934 -4.0411 26 6 3.0935 -2.8580 -2.1551 27 1 -0.4850 0.8400 0.0004 28 1 -0.1578 -1.4473 1.5499 29 1 -1.3014 -3.5256 2.1156 30 1 1.4793 -5.7721 -0.2162 31 1 3.9744 -5.2492 0.0897 32 1 5.9514 -5.3279 -1.3690 33 1 2.2941 -2.1661 -2.3756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239586162.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:37 Heat of formation + Delta-G solvation = -213.465302 kcal Electronic energy + Delta-G solvation = -27132.091513 eV Core-core repulsion = 22342.671474 eV Total energy + Delta-G solvation = -4789.420039 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.45056 -49.06958 -48.14812 -46.99449 -46.91966 -39.02039 -37.34900 -34.31708 -32.00118 -30.58216 -30.25274 -28.16667 -26.98142 -24.00110 -22.89696 -22.71444 -21.06039 -20.27219 -17.98689 -17.79132 -17.66223 -17.55976 -17.23209 -16.51593 -16.25809 -15.91222 -15.61439 -14.59062 -14.40972 -14.17030 -14.09333 -14.03231 -13.87415 -13.58324 -13.48941 -13.41899 -13.20123 -13.14008 -12.97883 -12.62924 -12.47742 -11.94109 -11.81607 -11.66721 -11.41804 -11.27965 -11.13286 -10.90542 -10.74578 -10.14629 -9.90167 -9.61255 -8.67935 -8.49186 -7.96123 -7.61765 -7.22601 -4.88024 1.24126 1.46045 2.21977 2.59708 2.85478 2.86804 2.90414 3.49933 3.60667 3.85265 4.11146 4.19967 4.69820 4.76185 4.86220 4.96461 5.06902 5.26015 5.34935 5.45153 5.65946 5.82848 6.02980 6.15237 6.33899 6.37697 6.46654 6.56804 6.68592 6.75668 6.92436 7.09662 7.16478 7.27358 7.49361 7.56570 7.75020 8.11598 8.34588 8.41227 9.65895 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.009286 B = 0.005474 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.728196 B = 5114.193325 C = 7587.369106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.430 4.430 8 H 0.091 0.909 9 C 0.146 3.854 10 C -0.159 4.159 11 C -0.056 4.056 12 C -0.316 4.316 13 C 0.515 3.485 14 F -0.191 7.191 15 F -0.194 7.194 16 F -0.194 7.194 17 C -0.007 4.007 18 C -0.198 4.198 19 C 0.041 3.959 20 C -0.113 4.113 21 C -0.126 4.126 22 C 0.034 3.966 23 F -0.141 7.141 24 C 0.063 3.937 25 F -0.137 7.137 26 C -0.108 4.108 27 H 0.292 0.708 28 H 0.128 0.872 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 -3.735 0.160 4.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.148 4.148 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.457 4.457 8 H 0.109 0.891 9 C 0.142 3.858 10 C -0.178 4.178 11 C -0.075 4.075 12 C -0.319 4.319 13 C 0.462 3.538 14 F -0.172 7.172 15 F -0.175 7.175 16 F -0.176 7.176 17 C -0.026 4.026 18 C -0.199 4.199 19 C 0.040 3.960 20 C -0.131 4.131 21 C -0.145 4.145 22 C 0.014 3.986 23 F -0.120 7.120 24 C 0.043 3.957 25 F -0.116 7.116 26 C -0.127 4.127 27 H 0.103 0.897 28 H 0.146 0.854 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.924 -3.562 0.076 4.609 hybrid contribution 0.325 0.667 -0.318 0.807 sum 3.249 -2.895 -0.242 4.358 Atomic orbital electron populations 1.69749 1.07822 1.30733 1.30300 1.26098 0.94881 1.02029 0.91820 0.86264 0.80344 0.79241 0.80771 1.18273 1.19777 1.18224 1.19813 0.97957 0.90669 1.37224 0.89149 1.17629 0.90097 0.90958 0.87095 1.21008 0.98851 0.96884 1.01038 1.20242 0.98030 0.91585 0.97618 1.18953 1.05295 0.90874 1.16738 1.18536 0.76549 0.85143 0.73615 1.93069 1.57566 1.93263 1.73351 1.93138 1.89622 1.85034 1.49752 1.93128 1.69526 1.73568 1.81344 1.20211 0.92565 0.96481 0.93295 1.18256 1.00408 0.93654 1.07632 1.18603 0.93288 0.92164 0.91922 1.21278 0.92345 0.99896 0.99602 1.20846 1.00044 0.99515 0.94081 1.17680 0.85122 1.01602 0.94172 1.91455 1.51849 1.95923 1.72787 1.17645 0.96340 0.93579 0.88094 1.91480 1.96421 1.70693 1.52984 1.21412 0.96821 1.00789 0.93673 0.89709 0.85427 0.87798 0.87955 0.84734 0.84541 0.82989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -16.67 10.94 55.55 0.61 -16.07 16 2 C 0.07 1.58 5.17 -17.32 -0.09 1.49 16 3 Si 0.91 16.29 29.59 -169.99 -5.03 11.26 16 4 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 5 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 6 H -0.26 -4.63 7.11 56.52 0.40 -4.22 16 7 C -0.43 -9.44 7.13 -37.90 -0.27 -9.71 16 8 H 0.09 1.95 6.60 -52.49 -0.35 1.60 16 9 C 0.15 3.24 5.56 -106.56 -0.59 2.65 16 10 C -0.16 -3.51 8.62 -39.29 -0.34 -3.85 16 11 C -0.06 -1.16 9.35 -39.97 -0.37 -1.53 16 12 C -0.32 -6.34 5.39 -104.42 -0.56 -6.90 16 13 C 0.52 9.52 3.31 36.00 0.12 9.64 16 14 F -0.19 -3.46 15.93 2.25 0.04 -3.42 16 15 F -0.19 -3.57 17.23 2.25 0.04 -3.53 16 16 F -0.19 -3.47 17.23 2.25 0.04 -3.43 16 17 C -0.01 -0.14 9.04 -39.29 -0.35 -0.49 16 18 C -0.20 -4.05 5.52 -104.22 -0.58 -4.63 16 19 C 0.04 0.75 4.93 -104.90 -0.52 0.23 16 20 C -0.11 -1.76 9.53 -39.17 -0.37 -2.14 16 21 C -0.13 -1.83 10.01 -39.58 -0.40 -2.22 16 22 C 0.03 0.56 7.31 -39.22 -0.29 0.28 16 23 F -0.14 -2.32 17.17 2.25 0.04 -2.28 16 24 C 0.06 1.12 7.30 -39.42 -0.29 0.84 16 25 F -0.14 -2.49 17.18 2.25 0.04 -2.45 16 26 C -0.11 -2.00 7.96 -39.11 -0.31 -2.31 16 27 H 0.29 5.79 8.29 -40.82 -0.34 5.46 16 28 H 0.13 2.88 6.21 -52.48 -0.33 2.56 16 29 H 0.10 1.98 7.12 -52.49 -0.37 1.61 16 30 H 0.10 1.81 8.05 -52.49 -0.42 1.39 16 31 H 0.13 1.87 8.05 -52.49 -0.42 1.45 16 32 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.15 2.96 7.30 -52.49 -0.38 2.58 16 LS Contribution 312.38 15.07 4.71 4.71 Total: -1.00 -22.42 312.38 -6.56 -28.99 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -1.83 Total: 4.89 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -5.21 Total: -18.67 kcal Atomic # 7 Polarization: -16.67 SS G_CDS: 0.61 Total: -16.07 kcal Atomic # 9 Polarization: -15.30 SS G_CDS: 0.19 Total: -15.11 kcal Atomic # 14 Polarization: 16.29 SS G_CDS: -5.03 Total: 11.26 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -22.42 -6.56 -28.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239586162.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.478 kcal (2) G-P(sol) polarization free energy of solvation -22.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds