Wall clock time and date at job start Tue Mar 31 2020 15:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30799 * 1 3 3 Si 1.86805 * 119.99870 * 2 1 4 4 H 1.48500 * 109.46797 * 89.99906 * 3 2 1 5 5 H 1.48493 * 109.47065 * 210.00067 * 3 2 1 6 6 H 1.48497 * 109.47132 * 330.00521 * 3 2 1 7 7 C 1.40006 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99925 * 17.43329 * 7 2 1 9 9 C 1.41027 * 120.00151 * 197.43761 * 7 2 1 10 10 C 1.40947 * 120.11475 * 29.23524 * 9 7 2 11 11 C 1.36244 * 119.87564 * 179.74456 * 10 9 7 12 12 C 1.39955 * 120.11874 * 0.55607 * 11 10 9 13 13 C 1.47989 * 119.87929 * 179.71685 * 12 11 10 14 14 C 1.39579 * 120.11682 * 179.70459 * 13 12 11 15 15 C 1.38179 * 119.87363 * 179.72043 * 14 13 12 16 16 F 1.35109 * 119.93877 * 180.27176 * 15 14 13 17 17 C 1.38567 * 120.12590 * 0.55495 * 15 14 13 18 18 C 1.38575 * 120.23822 * 359.72094 * 17 15 14 19 19 F 1.35100 * 119.94057 * 179.97438 * 18 17 15 20 20 C 1.38180 * 120.11712 * 359.97438 * 18 17 15 21 21 C 1.39916 * 120.23755 * 359.69326 * 12 11 10 22 22 C 1.36274 * 120.12229 * 0.02798 * 21 12 11 23 23 C 1.50701 * 120.05890 * 179.97438 * 22 21 12 24 24 F 1.39902 * 109.47005 * 0.02562 * 23 22 21 25 25 F 1.39896 * 109.47131 * 120.01601 * 23 22 21 26 26 F 1.39896 * 109.46605 * 240.01832 * 23 22 21 27 27 H 0.96999 * 119.99438 * 175.45633 * 1 2 3 28 28 H 1.08003 * 120.06539 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.93830 * 180.29423 * 11 10 9 30 30 H 1.07994 * 120.06505 * 359.97438 * 14 13 12 31 31 H 1.07998 * 119.88673 * 179.73954 * 17 15 14 32 32 H 1.08004 * 120.06105 * 179.97438 * 20 18 17 33 33 H 1.07997 * 119.93891 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.4894 2.0464 1.4001 5 1 3.5395 1.4403 -0.7000 6 1 1.4394 2.6527 -0.6999 7 6 2.0081 -1.2125 -0.0005 8 1 1.5053 -2.1262 -0.2812 9 6 3.3697 -1.2407 0.3654 10 6 3.8768 -0.2927 1.2769 11 6 5.1920 -0.3277 1.6311 12 6 6.0414 -1.2953 1.0827 13 6 7.4704 -1.3246 1.4663 14 6 8.3207 -2.2913 0.9271 15 6 9.6554 -2.3104 1.2844 16 9 10.4808 -3.2421 0.7591 17 6 10.1477 -1.3793 2.1849 18 6 9.3067 -0.4209 2.7276 19 9 9.7929 0.4836 3.6055 20 6 7.9717 -0.3888 2.3725 21 6 5.5444 -2.2355 0.1734 22 6 4.2294 -2.2130 -0.1833 23 6 3.6956 -3.2259 -1.1632 24 9 4.7306 -4.0780 -1.5634 25 9 2.6837 -3.9757 -0.5541 26 9 3.1772 -2.5645 -2.2816 27 1 -0.4849 -0.8374 -0.0666 28 1 3.2233 0.4578 1.6967 29 1 5.5805 0.3952 2.3330 30 1 7.9371 -3.0204 0.2289 31 1 11.1906 -1.4004 2.4646 32 1 7.3169 0.3583 2.7964 33 1 6.2043 -2.9798 -0.2471 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239656371.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:25 Heat of formation + Delta-G solvation = -212.358527 kcal Electronic energy + Delta-G solvation = -27140.748171 eV Core-core repulsion = 22351.376125 eV Total energy + Delta-G solvation = -4789.372046 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.35461 -48.91452 -48.88967 -46.93396 -46.72681 -39.26324 -37.72370 -34.40406 -32.28554 -31.30669 -30.02040 -29.38579 -26.09386 -24.73570 -22.85466 -22.61575 -21.39806 -20.38212 -18.74045 -18.22128 -17.65507 -17.64347 -16.83407 -16.59895 -16.45677 -15.85800 -15.50529 -15.21027 -15.06990 -14.60393 -14.40678 -14.20344 -13.82308 -13.77157 -13.63903 -13.32532 -13.15678 -12.98142 -12.89683 -12.83689 -12.54127 -12.33011 -12.07551 -11.64837 -11.55444 -11.44901 -11.17348 -10.77927 -10.55826 -10.26338 -9.78668 -9.57377 -9.13353 -8.64156 -8.44328 -7.97801 -7.59590 -5.09180 0.91118 1.15706 2.04195 2.29385 2.92099 3.09074 3.27772 3.55580 3.58226 3.67216 3.96481 4.18853 4.51620 4.71004 4.76726 4.80355 4.96032 4.98544 5.11429 5.29151 5.38379 5.55993 5.69240 5.94213 6.01396 6.12709 6.13681 6.17053 6.37073 6.41662 6.77674 6.86377 6.98604 7.07478 7.11533 7.27168 7.37919 7.82312 7.91721 8.13618 9.46303 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.013486 B = 0.004499 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.754155 B = 6221.782904 C = 7944.013258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.041 3.959 3 Si 1.070 2.930 4 H -0.269 1.269 5 H -0.256 1.256 6 H -0.282 1.282 7 C -0.467 4.467 8 H 0.095 0.905 9 C 0.128 3.872 10 C -0.237 4.237 11 C -0.025 4.025 12 C -0.221 4.221 13 C 0.080 3.920 14 C -0.192 4.192 15 C 0.141 3.859 16 F -0.138 7.138 17 C -0.232 4.232 18 C 0.140 3.860 19 F -0.138 7.138 20 C -0.190 4.190 21 C 0.010 3.990 22 C -0.297 4.297 23 C 0.521 3.479 24 F -0.197 7.197 25 F -0.188 7.188 26 F -0.181 7.181 27 H 0.295 0.705 28 H 0.119 0.881 29 H 0.110 0.890 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.743 -0.536 1.775 9.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.184 4.184 3 Si 0.894 3.106 4 H -0.196 1.196 5 H -0.180 1.180 6 H -0.208 1.208 7 C -0.492 4.492 8 H 0.113 0.887 9 C 0.123 3.877 10 C -0.255 4.255 11 C -0.043 4.043 12 C -0.222 4.222 13 C 0.080 3.920 14 C -0.211 4.211 15 C 0.121 3.879 16 F -0.117 7.117 17 C -0.252 4.252 18 C 0.120 3.880 19 F -0.117 7.117 20 C -0.209 4.209 21 C -0.009 4.009 22 C -0.299 4.299 23 C 0.468 3.532 24 F -0.179 7.179 25 F -0.169 7.169 26 F -0.162 7.162 27 H 0.108 0.892 28 H 0.136 0.864 29 H 0.128 0.872 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.406 1.010 1.789 9.628 hybrid contribution 0.155 -2.083 -0.101 2.091 sum 9.561 -1.073 1.688 9.768 Atomic orbital electron populations 1.70504 1.08185 1.34061 1.26342 1.27632 0.95596 1.04950 0.90215 0.83630 0.76035 0.72449 0.78463 1.19580 1.17963 1.20850 1.21220 0.94802 0.97792 1.35416 0.88742 1.17369 0.92431 0.89382 0.88504 1.20840 0.95937 1.04533 1.04210 1.20587 0.93015 0.95016 0.95680 1.17718 0.90795 1.04197 1.09518 1.18373 0.92724 0.90420 0.90520 1.21221 0.91543 1.02885 1.05411 1.17132 0.87886 0.87983 0.94879 1.91498 1.71824 1.63405 1.84927 1.20763 1.01402 0.99059 1.03995 1.17130 0.91988 0.88451 0.90382 1.91493 1.88478 1.65270 1.66433 1.21192 0.93703 1.03194 1.02825 1.20323 0.93357 0.94762 0.92413 1.19292 0.95525 1.06056 1.09034 1.18221 0.74667 0.79988 0.80359 1.93058 1.59507 1.73422 1.91883 1.93122 1.62191 1.78383 1.83243 1.93155 1.87460 1.80752 1.54878 0.89239 0.86372 0.87245 0.84278 0.84360 0.84182 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.19 13.65 55.55 0.76 -17.43 16 2 C 0.04 0.94 5.42 -17.33 -0.09 0.84 16 3 Si 1.07 21.04 24.90 -169.99 -4.23 16.81 16 4 H -0.27 -4.89 6.44 56.52 0.36 -4.52 16 5 H -0.26 -5.01 7.03 56.52 0.40 -4.62 16 6 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.47 -11.00 8.11 -37.86 -0.31 -11.31 16 8 H 0.09 2.33 6.31 -52.48 -0.33 2.00 16 9 C 0.13 2.85 5.11 -106.80 -0.55 2.30 16 10 C -0.24 -4.85 7.20 -39.27 -0.28 -5.13 16 11 C -0.02 -0.45 9.36 -39.66 -0.37 -0.82 16 12 C -0.22 -4.01 5.90 -104.63 -0.62 -4.63 16 13 C 0.08 1.28 5.88 -104.90 -0.62 0.66 16 14 C -0.19 -2.86 9.40 -39.10 -0.37 -3.23 16 15 C 0.14 1.98 7.29 -39.48 -0.29 1.69 16 16 F -0.14 -1.92 17.26 2.25 0.04 -1.88 16 17 C -0.23 -3.08 10.00 -39.34 -0.39 -3.47 16 18 C 0.14 1.94 7.29 -39.48 -0.29 1.65 16 19 F -0.14 -1.88 17.26 2.25 0.04 -1.84 16 20 C -0.19 -2.77 9.40 -39.10 -0.37 -3.14 16 21 C 0.01 0.18 8.75 -39.66 -0.35 -0.16 16 22 C -0.30 -6.27 5.38 -104.32 -0.56 -6.83 16 23 C 0.52 10.71 2.83 36.01 0.10 10.81 16 24 F -0.20 -3.68 15.95 2.25 0.04 -3.64 16 25 F -0.19 -3.96 15.66 2.25 0.04 -3.93 16 26 F -0.18 -3.86 16.54 2.25 0.04 -3.82 16 27 H 0.30 6.77 8.73 -40.82 -0.36 6.42 16 28 H 0.12 2.34 4.42 -52.48 -0.23 2.11 16 29 H 0.11 1.67 6.17 -52.49 -0.32 1.34 16 30 H 0.14 1.96 6.18 -52.49 -0.32 1.64 16 31 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.14 1.86 6.18 -52.48 -0.32 1.53 16 33 H 0.11 1.94 5.23 -52.49 -0.27 1.66 16 LS Contribution 300.42 15.07 4.53 4.53 Total: -1.00 -22.78 300.42 -5.53 -28.31 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -1.43 Total: 3.66 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -5.35 Total: -20.75 kcal Atomic # 7 Polarization: -18.19 SS G_CDS: 0.76 Total: -17.43 kcal Atomic # 9 Polarization: -15.31 SS G_CDS: 0.19 Total: -15.12 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.23 Total: 16.81 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -22.78 -5.53 -28.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239656371.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.049 kcal (2) G-P(sol) polarization free energy of solvation -22.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds