Wall clock time and date at job start Tue Mar 31 2020 15:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30799 * 1 3 3 Si 1.86805 * 119.99870 * 2 1 4 4 H 1.48500 * 109.46797 * 89.99906 * 3 2 1 5 5 H 1.48493 * 109.47065 * 210.00067 * 3 2 1 6 6 H 1.48497 * 109.47132 * 330.00521 * 3 2 1 7 7 C 1.40006 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99925 * 17.43329 * 7 2 1 9 9 C 1.41027 * 120.00151 * 197.43761 * 7 2 1 10 10 C 1.40947 * 120.11475 * 29.23524 * 9 7 2 11 11 C 1.36244 * 119.87564 * 179.74456 * 10 9 7 12 12 C 1.39955 * 120.11874 * 0.55607 * 11 10 9 13 13 C 1.47989 * 119.87929 * 179.71685 * 12 11 10 14 14 C 1.39579 * 120.11682 * 179.70459 * 13 12 11 15 15 C 1.38179 * 119.87363 * 179.72043 * 14 13 12 16 16 F 1.35109 * 119.93877 * 180.27176 * 15 14 13 17 17 C 1.38567 * 120.12590 * 0.55495 * 15 14 13 18 18 C 1.38575 * 120.23822 * 359.72094 * 17 15 14 19 19 F 1.35100 * 119.94057 * 179.97438 * 18 17 15 20 20 C 1.38180 * 120.11712 * 359.97438 * 18 17 15 21 21 C 1.39916 * 120.23755 * 359.69326 * 12 11 10 22 22 C 1.36274 * 120.12229 * 0.02798 * 21 12 11 23 23 C 1.50701 * 120.05890 * 179.97438 * 22 21 12 24 24 F 1.39902 * 109.47005 * 0.02562 * 23 22 21 25 25 F 1.39896 * 109.47131 * 120.01601 * 23 22 21 26 26 F 1.39896 * 109.46605 * 240.01832 * 23 22 21 27 27 H 0.96999 * 119.99438 * 175.45633 * 1 2 3 28 28 H 1.08003 * 120.06539 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.93830 * 180.29423 * 11 10 9 30 30 H 1.07994 * 120.06505 * 359.97438 * 14 13 12 31 31 H 1.07998 * 119.88673 * 179.73954 * 17 15 14 32 32 H 1.08004 * 120.06105 * 179.97438 * 20 18 17 33 33 H 1.07997 * 119.93891 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.4894 2.0464 1.4001 5 1 3.5395 1.4403 -0.7000 6 1 1.4394 2.6527 -0.6999 7 6 2.0081 -1.2125 -0.0005 8 1 1.5053 -2.1262 -0.2812 9 6 3.3697 -1.2407 0.3654 10 6 3.8768 -0.2927 1.2769 11 6 5.1920 -0.3277 1.6311 12 6 6.0414 -1.2953 1.0827 13 6 7.4704 -1.3246 1.4663 14 6 8.3207 -2.2913 0.9271 15 6 9.6554 -2.3104 1.2844 16 9 10.4808 -3.2421 0.7591 17 6 10.1477 -1.3793 2.1849 18 6 9.3067 -0.4209 2.7276 19 9 9.7929 0.4836 3.6055 20 6 7.9717 -0.3888 2.3725 21 6 5.5444 -2.2355 0.1734 22 6 4.2294 -2.2130 -0.1833 23 6 3.6956 -3.2259 -1.1632 24 9 4.7306 -4.0780 -1.5634 25 9 2.6837 -3.9757 -0.5541 26 9 3.1772 -2.5645 -2.2816 27 1 -0.4849 -0.8374 -0.0666 28 1 3.2233 0.4578 1.6967 29 1 5.5805 0.3952 2.3330 30 1 7.9371 -3.0204 0.2289 31 1 11.1906 -1.4004 2.4646 32 1 7.3169 0.3583 2.7964 33 1 6.2043 -2.9798 -0.2471 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239656371.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:24 Heat of formation + Delta-G solvation = -220.291255 kcal Electronic energy + Delta-G solvation = -27141.092159 eV Core-core repulsion = 22351.376125 eV Total energy + Delta-G solvation = -4789.716035 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.99628 -49.99949 -49.97223 -48.54641 -48.41208 -40.64400 -39.08862 -35.98267 -33.71642 -32.79905 -31.22142 -30.76983 -27.63186 -26.23771 -24.21223 -23.95049 -22.78561 -21.87644 -20.37096 -19.51924 -19.30784 -19.26532 -18.08364 -17.88925 -17.67532 -16.94912 -16.72620 -16.47358 -16.29024 -16.10811 -15.93808 -15.46501 -15.39686 -15.30114 -15.10712 -14.93057 -14.73360 -14.65534 -14.49271 -14.26528 -13.92699 -13.67492 -13.45208 -13.04019 -12.92256 -12.76687 -12.54813 -12.21600 -12.06696 -11.80834 -11.39800 -11.05385 -10.52523 -9.96960 -9.75657 -9.61141 -9.10518 -6.78457 -0.33435 0.02221 0.47008 0.82813 1.36493 1.54789 1.75593 1.94311 2.09886 2.25812 2.69962 2.83544 3.10697 3.16104 3.32459 3.41948 3.63204 3.73557 3.82114 3.95460 4.10940 4.17072 4.33010 4.63499 4.69884 4.79252 4.85438 4.94712 5.02703 5.13330 5.22074 5.31237 5.43810 5.54576 5.76454 5.81352 5.83900 6.14504 6.31902 6.51597 7.77379 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.013486 B = 0.004499 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.754155 B = 6221.782904 C = 7944.013258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.016 3.984 3 Si 1.095 2.905 4 H -0.241 1.241 5 H -0.256 1.256 6 H -0.281 1.281 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.117 3.883 10 C -0.249 4.249 11 C -0.023 4.023 12 C -0.198 4.198 13 C 0.057 3.943 14 C -0.186 4.186 15 C 0.135 3.865 16 F -0.136 7.136 17 C -0.211 4.211 18 C 0.136 3.864 19 F -0.134 7.134 20 C -0.179 4.179 21 C -0.002 4.002 22 C -0.312 4.312 23 C 0.521 3.479 24 F -0.185 7.185 25 F -0.195 7.195 26 F -0.189 7.189 27 H 0.285 0.715 28 H 0.124 0.876 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.163 0.837 32 H 0.156 0.844 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.780 0.346 3.237 14.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.202 4.202 3 Si 0.914 3.086 4 H -0.166 1.166 5 H -0.180 1.180 6 H -0.207 1.207 7 C -0.538 4.538 8 H 0.083 0.917 9 C 0.114 3.886 10 C -0.267 4.267 11 C -0.040 4.040 12 C -0.199 4.199 13 C 0.057 3.943 14 C -0.205 4.205 15 C 0.115 3.885 16 F -0.115 7.115 17 C -0.231 4.231 18 C 0.117 3.883 19 F -0.113 7.113 20 C -0.197 4.197 21 C -0.020 4.020 22 C -0.314 4.314 23 C 0.467 3.533 24 F -0.166 7.166 25 F -0.177 7.177 26 F -0.171 7.171 27 H 0.096 0.904 28 H 0.142 0.858 29 H 0.165 0.835 30 H 0.162 0.838 31 H 0.181 0.819 32 H 0.174 0.826 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 13.456 1.876 3.264 13.973 hybrid contribution -0.559 -2.496 -0.456 2.598 sum 12.897 -0.620 2.808 13.214 Atomic orbital electron populations 1.70570 1.08730 1.33312 1.30224 1.28524 0.95658 1.06928 0.89099 0.83383 0.75110 0.70138 0.80007 1.16594 1.18043 1.20723 1.21007 0.95907 0.97189 1.39685 0.91744 1.17597 0.92121 0.90253 0.88665 1.21004 0.97174 1.04469 1.04070 1.20991 0.92065 0.95401 0.95581 1.18057 0.92050 1.02543 1.07271 1.18227 0.91595 0.92087 0.92400 1.21339 0.91947 1.02389 1.04837 1.17125 0.87633 0.88417 0.95312 1.91512 1.71648 1.63388 1.84947 1.21063 1.02551 0.97449 1.02002 1.17105 0.91830 0.88739 0.90616 1.91517 1.88356 1.65122 1.66263 1.21358 0.94318 1.02537 1.01526 1.20574 0.92706 0.95753 0.92929 1.19501 0.96444 1.06108 1.09367 1.18255 0.74702 0.80138 0.80209 1.93070 1.58770 1.73022 1.91766 1.93103 1.62676 1.78524 1.83377 1.93133 1.87664 1.80990 1.55278 0.90371 0.85843 0.83518 0.83799 0.81947 0.82634 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.43 13.65 21.84 0.30 -40.14 16 2 C 0.02 0.78 5.42 85.28 0.46 1.25 16 3 Si 1.09 42.40 24.90 68.60 1.71 44.10 16 4 H -0.24 -8.15 6.44 99.48 0.64 -7.51 16 5 H -0.26 -9.80 7.03 99.48 0.70 -9.10 16 6 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.51 -25.41 8.11 23.38 0.19 -25.22 16 8 H 0.06 3.47 6.31 -2.91 -0.02 3.45 16 9 C 0.12 5.31 5.11 -21.28 -0.11 5.20 16 10 C -0.25 -9.84 7.20 22.47 0.16 -9.68 16 11 C -0.02 -0.75 9.36 22.22 0.21 -0.54 16 12 C -0.20 -6.56 5.90 -19.87 -0.12 -6.68 16 13 C 0.06 1.59 5.88 -20.05 -0.12 1.47 16 14 C -0.19 -4.84 9.40 22.58 0.21 -4.63 16 15 C 0.13 3.22 7.29 22.33 0.16 3.38 16 16 F -0.14 -3.29 17.26 44.97 0.78 -2.51 16 17 C -0.21 -4.54 10.00 22.43 0.22 -4.32 16 18 C 0.14 3.11 7.29 22.34 0.16 3.28 16 19 F -0.13 -3.02 17.26 44.97 0.78 -2.24 16 20 C -0.18 -4.33 9.40 22.58 0.21 -4.12 16 21 C 0.00 -0.06 8.75 22.22 0.19 0.13 16 22 C -0.31 -13.16 5.38 -19.67 -0.11 -13.27 16 23 C 0.52 21.82 2.83 71.24 0.20 22.02 16 24 F -0.18 -6.80 15.95 44.97 0.72 -6.08 16 25 F -0.20 -8.60 15.66 44.97 0.70 -7.89 16 26 F -0.19 -8.37 16.54 44.97 0.74 -7.63 16 27 H 0.29 14.24 8.73 -92.71 -0.81 13.44 16 28 H 0.12 4.71 4.42 -2.91 -0.01 4.69 16 29 H 0.15 3.74 6.17 -2.91 -0.02 3.72 16 30 H 0.14 3.57 6.18 -2.91 -0.02 3.55 16 31 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.16 3.27 6.18 -2.91 -0.02 3.25 16 33 H 0.13 4.22 5.23 -2.91 -0.02 4.21 16 Total: -1.00 -50.43 300.42 8.78 -41.65 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 1.11 Total: 12.47 kcal Atomic # 6 Polarization: -33.67 SS G_CDS: 1.94 Total: -31.73 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.30 Total: -40.14 kcal Atomic # 9 Polarization: -30.07 SS G_CDS: 3.72 Total: -26.35 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.71 Total: 44.10 kcal Total: -50.43 8.78 -41.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239656371.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.642 kcal (2) G-P(sol) polarization free energy of solvation -50.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds