Wall clock time and date at job start Tue Mar 31 2020 15:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30776 * 1 3 3 Si 1.86803 * 119.99944 * 2 1 4 4 H 1.48492 * 109.46971 * 239.99601 * 3 2 1 5 5 H 1.48501 * 109.46875 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47162 * 119.99466 * 3 2 1 7 7 C 1.40069 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00147 * 164.41228 * 7 2 1 9 9 C 1.40887 * 119.99942 * 344.40797 * 7 2 1 10 10 C 1.40749 * 120.32823 * 333.38715 * 9 7 2 11 11 C 1.36437 * 119.98633 * 179.97438 * 10 9 7 12 12 C 1.50703 * 119.65775 * 180.02562 * 11 10 9 13 13 F 1.39902 * 109.47135 * 89.99871 * 12 11 10 14 14 F 1.39902 * 109.46735 * 209.99629 * 12 11 10 15 15 F 1.39898 * 109.46902 * 329.99755 * 12 11 10 16 16 C 1.38925 * 120.68385 * 0.02562 * 11 10 9 17 17 C 1.38090 * 120.67362 * 359.67916 * 16 11 10 18 18 C 1.39157 * 119.98173 * 0.60069 * 17 16 11 19 19 C 1.47883 * 120.33423 * 179.70206 * 18 17 16 20 20 C 1.39622 * 120.12121 * 129.44702 * 19 18 17 21 21 C 1.38167 * 119.86916 * 179.77027 * 20 19 18 22 22 F 1.35098 * 119.93944 * 180.25560 * 21 20 19 23 23 C 1.38580 * 120.12663 * 0.52400 * 21 20 19 24 24 C 1.38578 * 120.24989 * 359.70637 * 23 21 20 25 25 F 1.35095 * 119.94024 * 180.02562 * 24 23 21 26 26 C 1.38175 * 120.12253 * 0.04143 * 24 23 21 27 27 H 0.96996 * 119.99907 * 0.02562 * 1 2 3 28 28 H 1.07995 * 120.00891 * 359.95950 * 10 9 7 29 29 H 1.08004 * 119.65912 * 179.97438 * 16 11 10 30 30 H 1.07997 * 120.00935 * 180.30589 * 17 16 11 31 31 H 1.07994 * 120.06723 * 0.02562 * 20 19 18 32 32 H 1.07993 * 119.87482 * 179.72337 * 23 21 20 33 33 H 1.08000 * 120.05934 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 3.0955 1.6964 -1.2124 5 1 1.2767 2.7464 -0.0006 6 1 3.0954 1.6965 1.2125 7 6 2.0081 -1.2130 0.0005 8 1 3.0584 -1.2303 -0.2508 9 6 1.3426 -2.4105 0.3290 10 6 0.2102 -2.3882 1.1646 11 6 -0.4293 -3.5520 1.4778 12 6 -1.6414 -3.5194 2.3727 13 9 -2.7928 -3.3670 1.5928 14 9 -1.7212 -4.7158 3.0934 15 9 -1.5353 -2.4450 3.2625 16 6 0.0255 -4.7668 0.9803 17 6 1.1301 -4.8203 0.1534 18 6 1.8070 -3.6509 -0.1793 19 6 2.9947 -3.6999 -1.0590 20 6 3.0806 -2.8559 -2.1679 21 6 4.1949 -2.9027 -2.9836 22 9 4.2818 -2.0831 -4.0540 23 6 5.2210 -3.7927 -2.7090 24 6 5.1389 -4.6361 -1.6124 25 9 6.1431 -5.5009 -1.3503 26 6 4.0317 -4.5943 -0.7869 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1523 -1.4500 1.5580 29 1 -0.4931 -5.6781 1.2392 30 1 1.4713 -5.7700 -0.2313 31 1 2.2796 -2.1650 -2.3854 32 1 6.0880 -3.8290 -3.3518 33 1 3.9686 -5.2523 0.0672 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239656723.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:13 Heat of formation + Delta-G solvation = -217.660743 kcal Electronic energy + Delta-G solvation = -27140.285193 eV Core-core repulsion = 22350.683226 eV Total energy + Delta-G solvation = -4789.601967 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.06168 -49.95722 -49.93600 -48.57358 -48.53066 -40.46684 -38.83396 -35.80260 -33.84845 -31.85728 -31.05560 -30.69284 -27.49757 -26.72540 -23.99041 -23.79286 -22.90105 -21.73137 -19.84398 -19.40059 -19.21837 -18.93502 -18.20529 -17.93126 -17.24198 -16.94443 -16.80841 -16.52407 -16.25907 -16.23873 -15.65976 -15.44209 -15.23547 -15.17852 -15.10312 -15.00338 -14.77132 -14.71949 -14.36969 -13.92989 -13.64723 -13.52178 -13.15743 -12.98578 -12.79890 -12.78173 -12.69376 -12.48980 -12.23221 -11.69162 -11.58997 -11.16721 -10.22456 -9.68903 -9.49531 -9.32288 -8.77044 -6.44514 -0.15223 0.09050 0.65469 0.92086 1.38135 1.46288 1.48937 1.83926 2.14236 2.41558 2.59146 2.88533 2.98165 3.25552 3.29391 3.52993 3.70362 3.74268 3.94330 4.08433 4.27679 4.39307 4.56119 4.82792 4.86630 4.95658 4.99874 5.09157 5.13400 5.21801 5.34669 5.47747 5.68561 5.78034 5.90429 5.94702 6.12036 6.42228 6.75302 6.77740 8.17350 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.010867 B = 0.005032 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.925916 B = 5562.627590 C = 7469.165360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.042 3.958 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.461 4.461 8 H 0.087 0.913 9 C 0.104 3.896 10 C -0.131 4.131 11 C -0.160 4.160 12 C 0.509 3.491 13 F -0.187 7.187 14 F -0.179 7.179 15 F -0.187 7.187 16 C -0.208 4.208 17 C -0.059 4.059 18 C -0.179 4.179 19 C 0.056 3.944 20 C -0.149 4.149 21 C 0.118 3.882 22 F -0.139 7.139 23 C -0.199 4.199 24 C 0.127 3.873 25 F -0.134 7.134 26 C -0.164 4.164 27 H 0.294 0.706 28 H 0.115 0.885 29 H 0.128 0.872 30 H 0.137 0.863 31 H 0.128 0.872 32 H 0.166 0.834 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.475 -4.713 -1.348 6.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.176 4.176 3 Si 0.788 3.212 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.488 4.488 8 H 0.105 0.895 9 C 0.102 3.898 10 C -0.150 4.150 11 C -0.162 4.162 12 C 0.455 3.545 13 F -0.168 7.168 14 F -0.160 7.160 15 F -0.169 7.169 16 C -0.227 4.227 17 C -0.076 4.076 18 C -0.181 4.181 19 C 0.055 3.945 20 C -0.169 4.169 21 C 0.099 3.901 22 F -0.118 7.118 23 C -0.218 4.218 24 C 0.108 3.892 25 F -0.112 7.112 26 C -0.183 4.183 27 H 0.105 0.895 28 H 0.133 0.867 29 H 0.145 0.855 30 H 0.155 0.845 31 H 0.146 0.854 32 H 0.183 0.817 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.258 -4.545 -1.369 6.377 hybrid contribution -0.183 1.030 0.091 1.050 sum 4.075 -3.515 -1.278 5.531 Atomic orbital electron populations 1.69768 1.08867 1.31341 1.33306 1.26679 0.95334 1.04288 0.91272 0.85437 0.79120 0.76320 0.80326 1.18292 1.19295 1.18320 1.19727 0.97790 0.91157 1.40173 0.89484 1.17668 0.90669 0.92553 0.88959 1.20863 0.98615 0.95987 0.99525 1.19635 0.96297 0.97280 1.02953 1.18561 0.84046 0.72874 0.78975 1.93158 1.53238 1.95427 1.74976 1.93126 1.96748 1.46702 1.79415 1.93128 1.96287 1.57050 1.70418 1.20302 1.01451 0.95243 1.05688 1.20872 0.94112 0.96952 0.95711 1.18797 1.00122 0.93980 1.05205 1.18235 0.92613 0.92020 0.91602 1.21386 0.98275 1.01727 0.95462 1.17206 0.95400 0.91675 0.85837 1.91484 1.96412 1.70627 1.53283 1.21040 1.01460 0.98768 1.00553 1.17054 0.86029 0.90661 0.95480 1.91502 1.58658 1.67399 1.93644 1.21417 0.92737 1.02424 1.01701 0.89519 0.86703 0.85453 0.84544 0.85364 0.81673 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.27 10.96 21.85 0.24 -38.03 16 2 C 0.04 1.90 5.17 85.29 0.44 2.34 16 3 Si 0.97 35.10 29.59 68.60 2.03 37.13 16 4 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 5 H -0.27 -9.39 7.11 99.48 0.71 -8.68 16 6 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 7 C -0.46 -21.39 7.13 23.36 0.17 -21.23 16 8 H 0.09 3.94 6.64 -2.91 -0.02 3.92 16 9 C 0.10 4.86 5.56 -21.12 -0.12 4.74 16 10 C -0.13 -6.15 7.95 22.46 0.18 -5.98 16 11 C -0.16 -6.78 5.42 -20.12 -0.11 -6.89 16 12 C 0.51 19.85 3.35 71.24 0.24 20.09 16 13 F -0.19 -7.33 17.30 44.97 0.78 -6.55 16 14 F -0.18 -6.29 16.43 44.97 0.74 -5.55 16 15 F -0.19 -7.48 16.41 44.97 0.74 -6.74 16 16 C -0.21 -7.90 9.38 22.40 0.21 -7.69 16 17 C -0.06 -2.15 9.52 22.46 0.21 -1.94 16 18 C -0.18 -7.32 5.52 -19.61 -0.11 -7.43 16 19 C 0.06 2.01 4.92 -20.06 -0.10 1.91 16 20 C -0.15 -5.41 7.99 22.59 0.18 -5.23 16 21 C 0.12 3.74 7.29 22.33 0.16 3.91 16 22 F -0.14 -4.43 17.26 44.97 0.78 -3.65 16 23 C -0.20 -5.40 10.00 22.43 0.22 -5.18 16 24 C 0.13 3.56 7.29 22.34 0.16 3.72 16 25 F -0.13 -3.53 17.26 44.97 0.78 -2.75 16 26 C -0.16 -5.00 9.51 22.59 0.21 -4.79 16 27 H 0.29 12.77 8.29 -92.71 -0.77 12.00 16 28 H 0.12 5.77 5.72 -2.91 -0.02 5.76 16 29 H 0.13 4.21 7.57 -2.91 -0.02 4.19 16 30 H 0.14 4.07 8.05 -2.91 -0.02 4.05 16 31 H 0.13 5.17 7.33 -2.91 -0.02 5.15 16 32 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.15 4.13 8.05 -2.91 -0.02 4.10 16 Total: -1.00 -48.11 312.23 9.24 -38.87 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 1.20 Total: 16.90 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 1.96 Total: -29.63 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.24 Total: -38.03 kcal Atomic # 9 Polarization: -29.05 SS G_CDS: 3.81 Total: -25.24 kcal Atomic # 14 Polarization: 35.10 SS G_CDS: 2.03 Total: 37.13 kcal Total: -48.11 9.24 -38.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239656723.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.791 kcal (2) G-P(sol) polarization free energy of solvation -48.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds