Wall clock time and date at job start Tue Mar 31 2020 15:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86794 * 120.00011 * 2 1 4 4 H 1.48498 * 109.47396 * 90.00019 * 3 2 1 5 5 H 1.48500 * 109.47058 * 210.00207 * 3 2 1 6 6 H 1.48504 * 109.47328 * 329.99938 * 3 2 1 7 7 C 1.39985 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00025 * 17.44248 * 7 2 1 9 9 C 1.40997 * 119.99757 * 197.45159 * 7 2 1 10 10 C 1.40968 * 120.11501 * 29.25321 * 9 7 2 11 11 C 1.36208 * 119.87972 * 179.78839 * 10 9 7 12 12 C 1.40005 * 120.11536 * 0.46973 * 11 10 9 13 13 C 1.47890 * 119.88416 * 179.76240 * 12 11 10 14 14 C 1.39659 * 120.13521 * 129.74972 * 13 12 11 15 15 C 1.37822 * 119.90002 * 179.72019 * 14 13 12 16 16 C 1.38710 * 120.17849 * 0.55058 * 15 14 13 17 17 F 1.35100 * 119.86064 * 179.74188 * 16 15 14 18 18 C 1.38542 * 120.27477 * 359.72306 * 16 15 14 19 19 C 1.38149 * 120.09218 * 359.97438 * 18 16 15 20 20 F 1.35101 * 120.09142 * 179.97438 * 19 18 16 21 21 C 1.39976 * 120.23186 * 359.78333 * 12 11 10 22 22 C 1.36234 * 120.11527 * 359.97438 * 21 12 11 23 23 C 1.50699 * 120.06110 * 179.97438 * 22 21 12 24 24 F 1.39907 * 109.46661 * 0.02562 * 23 22 21 25 25 F 1.39900 * 109.47262 * 120.02142 * 23 22 21 26 26 F 1.39901 * 109.47406 * 240.02318 * 23 22 21 27 27 H 0.97003 * 120.00087 * 175.46243 * 1 2 3 28 28 H 1.07995 * 120.05951 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.94059 * 180.22730 * 11 10 9 30 30 H 1.08004 * 120.04623 * 359.97414 * 14 13 12 31 31 H 1.08003 * 119.90842 * 180.25236 * 15 14 13 32 32 H 1.08000 * 119.95490 * 180.02562 * 18 16 15 33 33 H 1.08001 * 119.94126 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.4897 2.0464 1.4000 5 1 3.5397 1.4401 -0.7001 6 1 1.4396 2.6527 -0.7001 7 6 2.0080 -1.2123 -0.0005 8 1 1.5053 -2.1260 -0.2813 9 6 3.3693 -1.2406 0.3657 10 6 3.8762 -0.2928 1.2778 11 6 5.1911 -0.3272 1.6315 12 6 6.0409 -1.2955 1.0834 13 6 7.4689 -1.3248 1.4670 14 6 8.0575 -2.5195 1.8874 15 6 9.3901 -2.5426 2.2382 16 6 10.1452 -1.3801 2.1859 17 9 11.4497 -1.4090 2.5363 18 6 9.5673 -0.1898 1.7754 19 6 8.2341 -0.1551 1.4152 20 9 7.6704 1.0058 1.0155 21 6 5.5438 -2.2356 0.1732 22 6 4.2292 -2.2129 -0.1834 23 6 3.6954 -3.2253 -1.1639 24 9 4.7305 -4.0771 -1.5645 25 9 2.6834 -3.9754 -0.5553 26 9 3.1770 -2.5633 -2.2820 27 1 -0.4850 -0.8374 -0.0665 28 1 3.2223 0.4568 1.6982 29 1 5.5797 0.3962 2.3330 30 1 7.4703 -3.4248 1.9334 31 1 9.8465 -3.4672 2.5594 32 1 10.1601 0.7121 1.7362 33 1 6.2036 -2.9802 -0.2471 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239677335.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:28 Heat of formation + Delta-G solvation = -220.801048 kcal Electronic energy + Delta-G solvation = -27378.985935 eV Core-core repulsion = 22589.247794 eV Total energy + Delta-G solvation = -4789.738141 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.97616 -49.94617 -49.90066 -48.52265 -48.39438 -40.44156 -39.15977 -35.96218 -33.59899 -32.65597 -31.76738 -30.44110 -27.46923 -26.07085 -24.21613 -23.70572 -23.03236 -21.94995 -20.33544 -19.29897 -19.28130 -19.22236 -18.83467 -17.98766 -17.06307 -16.84463 -16.65861 -16.31545 -16.29781 -16.16961 -15.90513 -15.44241 -15.34981 -15.27640 -15.01188 -14.89296 -14.79841 -14.63812 -14.52513 -14.37779 -13.89574 -13.49961 -13.34627 -13.23083 -12.95789 -12.74413 -12.47307 -12.19255 -12.14947 -11.79371 -11.41785 -11.01724 -10.22212 -9.98162 -9.93226 -9.55461 -9.13069 -6.77867 -0.19897 0.08092 0.45291 0.70059 1.33795 1.51052 1.72652 1.95743 2.08259 2.31764 2.54250 2.91804 3.10751 3.14736 3.35769 3.47703 3.69728 3.75427 3.77331 3.97643 4.11146 4.25548 4.33073 4.69590 4.78295 4.81974 4.88536 4.98480 5.08194 5.16940 5.24030 5.33730 5.45900 5.53367 5.71944 5.81511 5.85845 6.17017 6.34550 6.54460 7.80434 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.014632 B = 0.004556 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.213789 B = 6144.400659 C = 7561.075933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.019 3.981 3 Si 1.094 2.906 4 H -0.248 1.248 5 H -0.262 1.262 6 H -0.278 1.278 7 C -0.519 4.519 8 H 0.066 0.934 9 C 0.118 3.882 10 C -0.249 4.249 11 C -0.025 4.025 12 C -0.192 4.192 13 C -0.058 4.058 14 C -0.062 4.062 15 C -0.144 4.144 16 C 0.108 3.892 17 F -0.136 7.136 18 C -0.184 4.184 19 C 0.108 3.892 20 F -0.139 7.139 21 C -0.001 4.001 22 C -0.311 4.311 23 C 0.522 3.478 24 F -0.183 7.183 25 F -0.194 7.194 26 F -0.191 7.191 27 H 0.285 0.715 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.157 0.843 31 H 0.170 0.830 32 H 0.161 0.839 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.519 -2.163 3.732 16.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.199 4.199 3 Si 0.914 3.086 4 H -0.173 1.173 5 H -0.186 1.186 6 H -0.204 1.204 7 C -0.546 4.546 8 H 0.084 0.916 9 C 0.114 3.886 10 C -0.267 4.267 11 C -0.043 4.043 12 C -0.193 4.193 13 C -0.059 4.059 14 C -0.080 4.080 15 C -0.163 4.163 16 C 0.089 3.911 17 F -0.115 7.115 18 C -0.203 4.203 19 C 0.089 3.911 20 F -0.117 7.117 21 C -0.019 4.019 22 C -0.313 4.313 23 C 0.469 3.531 24 F -0.165 7.165 25 F -0.176 7.176 26 F -0.172 7.172 27 H 0.096 0.904 28 H 0.136 0.864 29 H 0.144 0.856 30 H 0.174 0.826 31 H 0.187 0.813 32 H 0.178 0.822 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 15.179 -0.574 3.741 15.644 hybrid contribution -0.693 -1.843 -0.467 2.024 sum 14.486 -2.417 3.274 15.047 Atomic orbital electron populations 1.70572 1.08604 1.33219 1.31030 1.28346 0.95691 1.06663 0.89199 0.83365 0.74966 0.70650 0.79648 1.17281 1.18612 1.20413 1.20914 0.95915 0.97140 1.40671 0.91627 1.17543 0.92220 0.90187 0.88608 1.20926 0.96974 1.04577 1.04271 1.20819 0.92426 0.95235 0.95856 1.18015 0.92055 1.02210 1.06984 1.18925 0.92615 0.93073 1.01279 1.21247 0.94211 0.97166 0.95330 1.21368 0.93868 0.98445 1.02616 1.17426 0.78666 0.94241 1.00766 1.91511 1.33158 1.97191 1.89605 1.21014 0.93965 0.99987 1.05356 1.17606 0.91214 0.81715 1.00610 1.91497 1.85404 1.46610 1.88233 1.20466 0.92554 0.95773 0.93137 1.19494 0.96448 1.06095 1.09287 1.18207 0.74702 0.80085 0.80124 1.93070 1.58703 1.72966 1.91740 1.93103 1.62647 1.78464 1.83385 1.93131 1.87688 1.81029 1.55356 0.90404 0.86414 0.85590 0.82551 0.81295 0.82185 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.15 13.65 21.83 0.30 -41.85 16 2 C 0.02 0.96 5.41 85.27 0.46 1.42 16 3 Si 1.09 45.64 24.90 68.60 1.71 47.35 16 4 H -0.25 -9.29 6.44 99.48 0.64 -8.65 16 5 H -0.26 -10.99 7.03 99.48 0.70 -10.29 16 6 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.52 -26.80 8.11 23.37 0.19 -26.61 16 8 H 0.07 3.63 6.31 -2.91 -0.02 3.61 16 9 C 0.12 5.59 5.11 -21.27 -0.11 5.48 16 10 C -0.25 -10.71 7.20 22.47 0.16 -10.55 16 11 C -0.03 -0.95 8.79 22.23 0.20 -0.75 16 12 C -0.19 -6.72 5.34 -19.87 -0.11 -6.83 16 13 C -0.06 -1.64 5.47 -19.98 -0.11 -1.75 16 14 C -0.06 -1.35 9.51 22.51 0.21 -1.13 16 15 C -0.14 -2.63 10.01 22.28 0.22 -2.41 16 16 C 0.11 2.21 7.30 22.46 0.16 2.38 16 17 F -0.14 -2.76 17.26 44.97 0.78 -1.98 16 18 C -0.18 -4.07 9.99 22.32 0.22 -3.85 16 19 C 0.11 2.96 7.16 22.64 0.16 3.12 16 20 F -0.14 -4.29 15.88 44.97 0.71 -3.58 16 21 C 0.00 -0.05 8.83 22.22 0.20 0.15 16 22 C -0.31 -13.49 5.38 -19.67 -0.11 -13.60 16 23 C 0.52 22.19 2.83 71.24 0.20 22.40 16 24 F -0.18 -6.74 15.95 44.97 0.72 -6.03 16 25 F -0.19 -8.62 15.66 44.97 0.70 -7.91 16 26 F -0.19 -8.63 16.54 44.97 0.74 -7.88 16 27 H 0.28 14.66 8.73 -92.71 -0.81 13.85 16 28 H 0.12 4.97 4.43 -2.91 -0.01 4.96 16 29 H 0.13 4.14 7.77 -2.91 -0.02 4.12 16 30 H 0.16 2.96 8.04 -2.91 -0.02 2.94 16 31 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.14 4.30 7.09 -2.91 -0.02 4.27 16 Total: -1.00 -53.89 305.36 8.72 -45.17 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.09 Total: 9.25 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: 1.96 Total: -32.54 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.30 Total: -41.85 kcal Atomic # 9 Polarization: -31.04 SS G_CDS: 3.66 Total: -27.38 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.71 Total: 47.35 kcal Total: -53.89 8.72 -45.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239677335.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.627 kcal (2) G-P(sol) polarization free energy of solvation -53.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds