Wall clock time and date at job start Tue Mar 31 2020 15:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86794 * 120.00421 * 2 1 4 4 H 1.48496 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47134 * 299.99631 * 3 2 1 6 6 H 1.48496 * 109.47436 * 59.99755 * 3 2 1 7 7 C 1.40055 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00200 * 195.47092 * 7 2 1 9 9 C 1.40852 * 119.99723 * 15.47189 * 7 2 1 10 10 C 1.40762 * 120.33380 * 25.32164 * 9 7 2 11 11 C 1.36414 * 119.98949 * 179.69755 * 10 9 7 12 12 C 1.50695 * 119.65339 * 180.29721 * 11 10 9 13 13 F 1.39896 * 109.47315 * 180.26169 * 12 11 10 14 14 F 1.39905 * 109.47230 * 300.26328 * 12 11 10 15 15 F 1.39908 * 109.47159 * 60.26035 * 12 11 10 16 16 C 1.38955 * 120.69541 * 0.55876 * 11 10 9 17 17 C 1.38037 * 120.68279 * 359.44142 * 16 11 10 18 18 C 1.39222 * 119.98233 * 0.27093 * 17 16 11 19 19 C 1.47773 * 120.34494 * 180.02562 * 18 17 16 20 20 C 1.39701 * 120.13888 * 65.00298 * 19 18 17 21 21 C 1.37805 * 119.90287 * 180.02562 * 20 19 18 22 22 C 1.38729 * 120.18164 * 359.97438 * 21 20 19 23 23 F 1.35092 * 119.85810 * 180.02562 * 22 21 20 24 24 C 1.38543 * 120.27711 * 359.97438 * 22 21 20 25 25 C 1.38143 * 120.10327 * 359.76815 * 24 22 21 26 26 F 1.35103 * 120.09582 * 180.25871 * 25 24 22 27 27 H 0.97002 * 120.00028 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00383 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.65718 * 179.70939 * 16 11 10 30 30 H 1.08007 * 120.00850 * 180.25418 * 17 16 11 31 31 H 1.08005 * 120.05038 * 0.02562 * 20 19 18 32 32 H 1.07997 * 119.91561 * 179.97438 * 21 20 19 33 33 H 1.08008 * 119.95226 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6176 0.0000 4 1 3.7019 1.3462 -0.0006 5 1 1.8833 2.3963 -1.2126 6 1 1.8833 2.3964 1.2124 7 6 2.0081 -1.2129 0.0005 8 1 3.0587 -1.2298 0.2500 9 6 1.3420 -2.4107 -0.3243 10 6 0.1921 -2.3872 -1.1358 11 6 -0.4439 -3.5520 -1.4512 12 6 -1.6704 -3.5186 -2.3261 13 9 -2.1499 -4.8204 -2.5068 14 9 -2.6580 -2.7385 -1.7150 15 9 -1.3421 -2.9658 -3.5686 16 6 0.0242 -4.7686 -0.9698 17 6 1.1492 -4.8245 -0.1718 18 6 1.8237 -3.6535 0.1628 19 6 3.0292 -3.7042 1.0160 20 6 4.1852 -4.3422 0.5597 21 6 5.3064 -4.3870 1.3596 22 6 5.2905 -3.7998 2.6164 23 9 6.3935 -3.8472 3.3950 24 6 4.1485 -3.1642 3.0760 25 6 3.0197 -3.1078 2.2817 26 9 1.9078 -2.4834 2.7279 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1839 -1.4474 -1.5124 29 1 -0.4951 -5.6802 -1.2261 30 1 1.5058 -5.7765 0.1930 31 1 4.2002 -4.7997 -0.4185 32 1 6.2001 -4.8806 1.0073 33 1 4.1420 -2.7085 4.0552 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239678909.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:17 Heat of formation + Delta-G solvation = -207.059034 kcal Electronic energy + Delta-G solvation = -27470.222501 eV Core-core repulsion = 22681.080259 eV Total energy + Delta-G solvation = -4789.142243 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.43911 -48.72058 -48.17678 -46.98359 -46.88040 -38.78351 -37.41811 -34.07828 -32.22897 -30.50088 -29.91723 -28.82587 -25.72556 -24.91970 -22.75122 -22.20203 -21.37511 -20.12273 -18.15860 -17.76031 -17.74387 -17.57377 -16.58391 -16.53037 -16.10111 -15.54190 -15.21229 -15.10438 -14.70676 -14.10891 -13.91799 -13.82565 -13.72334 -13.56385 -13.47204 -13.38213 -13.14548 -13.09886 -13.08984 -12.72931 -12.13692 -11.91095 -11.54722 -11.46250 -11.39962 -11.28713 -11.03521 -10.97357 -10.66065 -10.06830 -9.93169 -9.49936 -8.71281 -8.32343 -7.80384 -7.71034 -7.06506 -4.68325 1.30054 1.44325 2.21361 2.59052 2.94412 2.98101 3.00457 3.48452 3.72740 3.79269 4.21204 4.29476 4.64526 4.87346 4.87832 4.94717 5.04603 5.16512 5.37189 5.39551 5.61568 5.96743 6.13991 6.19197 6.28559 6.39385 6.43966 6.63478 6.71973 6.78301 6.95185 7.05451 7.16348 7.42031 7.54250 7.61315 7.81916 8.16735 8.48822 8.53071 9.85415 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.005105 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.808801 B = 5483.412233 C = 7124.101919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.434 4.434 8 H 0.084 0.916 9 C 0.130 3.870 10 C -0.103 4.103 11 C -0.153 4.153 12 C 0.503 3.497 13 F -0.190 7.190 14 F -0.183 7.183 15 F -0.188 7.188 16 C -0.215 4.215 17 C -0.058 4.058 18 C -0.181 4.181 19 C -0.024 4.024 20 C -0.068 4.068 21 C -0.168 4.168 22 C 0.102 3.898 23 F -0.143 7.143 24 C -0.200 4.200 25 C 0.148 3.852 26 F -0.115 7.115 27 H 0.288 0.712 28 H 0.132 0.868 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.307 -4.165 0.506 6.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.461 4.461 8 H 0.102 0.898 9 C 0.127 3.873 10 C -0.123 4.123 11 C -0.154 4.154 12 C 0.450 3.550 13 F -0.171 7.171 14 F -0.164 7.164 15 F -0.170 7.170 16 C -0.235 4.235 17 C -0.077 4.077 18 C -0.183 4.183 19 C -0.025 4.025 20 C -0.086 4.086 21 C -0.187 4.187 22 C 0.083 3.917 23 F -0.122 7.122 24 C -0.219 4.219 25 C 0.128 3.872 26 F -0.093 7.093 27 H 0.100 0.900 28 H 0.150 0.850 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.049 -3.957 0.547 5.688 hybrid contribution 0.010 0.954 0.161 0.968 sum 4.060 -3.003 0.709 5.099 Atomic orbital electron populations 1.69744 1.07697 1.30191 1.32046 1.26021 0.94831 1.01835 0.91878 0.86205 0.81109 0.80380 0.79025 1.18015 1.19260 1.19511 1.19578 0.97518 0.90535 1.38503 0.89767 1.17359 0.90237 0.91355 0.88361 1.20911 0.97285 0.95862 0.98193 1.19417 0.95791 0.97157 1.03064 1.18780 0.84834 0.72537 0.78883 1.93078 1.89845 1.38528 1.95669 1.93176 1.64912 1.75314 1.82992 1.93145 1.92686 1.85820 1.45319 1.19975 1.01025 0.95103 1.07370 1.20462 0.94582 0.95896 0.96724 1.18397 0.99113 0.94145 1.06648 1.18892 0.95011 0.96655 0.91990 1.21064 0.90470 0.97750 0.99339 1.20981 1.00358 1.03895 0.93444 1.17285 0.82946 1.01420 0.90053 1.91461 1.51389 1.94920 1.74424 1.20882 0.92498 1.06183 1.02384 1.17529 0.82938 0.94403 0.92343 1.91571 1.49829 1.79230 1.88690 0.90049 0.84997 0.87589 0.87983 0.84411 0.84870 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.44 10.87 55.55 0.60 -17.84 16 2 C 0.08 1.73 5.18 -17.32 -0.09 1.64 16 3 Si 0.91 17.47 29.59 -169.99 -5.03 12.44 16 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 6 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.43 -10.30 7.48 -37.91 -0.28 -10.58 16 8 H 0.08 1.97 7.08 -52.49 -0.37 1.60 16 9 C 0.13 3.09 5.46 -106.55 -0.58 2.51 16 10 C -0.10 -2.47 8.12 -39.29 -0.32 -2.78 16 11 C -0.15 -3.35 5.34 -105.02 -0.56 -3.92 16 12 C 0.50 10.20 3.30 36.00 0.12 10.32 16 13 F -0.19 -3.56 15.93 2.25 0.04 -3.53 16 14 F -0.18 -3.80 17.22 2.25 0.04 -3.77 16 15 F -0.19 -3.74 17.23 2.25 0.04 -3.70 16 16 C -0.22 -4.41 9.41 -39.39 -0.37 -4.78 16 17 C -0.06 -1.17 9.73 -39.29 -0.38 -1.55 16 18 C -0.18 -3.88 5.06 -104.23 -0.53 -4.41 16 19 C -0.02 -0.46 4.40 -104.82 -0.46 -0.92 16 20 C -0.07 -1.06 9.74 -39.19 -0.38 -1.44 16 21 C -0.17 -2.36 10.01 -39.56 -0.40 -2.75 16 22 C 0.10 1.55 7.30 -39.29 -0.29 1.26 16 23 F -0.14 -2.09 17.26 2.25 0.04 -2.05 16 24 C -0.20 -3.24 9.99 -39.50 -0.39 -3.63 16 25 C 0.15 2.81 6.49 -38.99 -0.25 2.55 16 26 F -0.12 -2.47 16.12 2.25 0.04 -2.44 16 27 H 0.29 6.25 8.30 -40.82 -0.34 5.91 16 28 H 0.13 3.28 6.12 -52.49 -0.32 2.96 16 29 H 0.11 1.97 7.12 -52.48 -0.37 1.59 16 30 H 0.10 1.75 8.06 -52.48 -0.42 1.32 16 31 H 0.14 1.90 8.06 -52.48 -0.42 1.48 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.14 1.99 8.06 -52.48 -0.42 1.56 16 LS Contribution 313.40 15.07 4.72 4.72 Total: -1.00 -24.49 313.40 -6.58 -31.07 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -1.89 Total: 3.59 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -5.17 Total: -18.49 kcal Atomic # 7 Polarization: -18.44 SS G_CDS: 0.60 Total: -17.84 kcal Atomic # 9 Polarization: -15.68 SS G_CDS: 0.19 Total: -15.49 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -24.49 -6.58 -31.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239678909.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.988 kcal (2) G-P(sol) polarization free energy of solvation -24.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds