Wall clock time and date at job start Tue Mar 31 2020 15:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86794 * 120.00421 * 2 1 4 4 H 1.48496 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47134 * 299.99631 * 3 2 1 6 6 H 1.48496 * 109.47436 * 59.99755 * 3 2 1 7 7 C 1.40055 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00200 * 195.47092 * 7 2 1 9 9 C 1.40852 * 119.99723 * 15.47189 * 7 2 1 10 10 C 1.40762 * 120.33380 * 25.32164 * 9 7 2 11 11 C 1.36414 * 119.98949 * 179.69755 * 10 9 7 12 12 C 1.50695 * 119.65339 * 180.29721 * 11 10 9 13 13 F 1.39896 * 109.47315 * 180.26169 * 12 11 10 14 14 F 1.39905 * 109.47230 * 300.26328 * 12 11 10 15 15 F 1.39908 * 109.47159 * 60.26035 * 12 11 10 16 16 C 1.38955 * 120.69541 * 0.55876 * 11 10 9 17 17 C 1.38037 * 120.68279 * 359.44142 * 16 11 10 18 18 C 1.39222 * 119.98233 * 0.27093 * 17 16 11 19 19 C 1.47773 * 120.34494 * 180.02562 * 18 17 16 20 20 C 1.39701 * 120.13888 * 65.00298 * 19 18 17 21 21 C 1.37805 * 119.90287 * 180.02562 * 20 19 18 22 22 C 1.38729 * 120.18164 * 359.97438 * 21 20 19 23 23 F 1.35092 * 119.85810 * 180.02562 * 22 21 20 24 24 C 1.38543 * 120.27711 * 359.97438 * 22 21 20 25 25 C 1.38143 * 120.10327 * 359.76815 * 24 22 21 26 26 F 1.35103 * 120.09582 * 180.25871 * 25 24 22 27 27 H 0.97002 * 120.00028 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00383 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.65718 * 179.70939 * 16 11 10 30 30 H 1.08007 * 120.00850 * 180.25418 * 17 16 11 31 31 H 1.08005 * 120.05038 * 0.02562 * 20 19 18 32 32 H 1.07997 * 119.91561 * 179.97438 * 21 20 19 33 33 H 1.08008 * 119.95226 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6176 0.0000 4 1 3.7019 1.3462 -0.0006 5 1 1.8833 2.3963 -1.2126 6 1 1.8833 2.3964 1.2124 7 6 2.0081 -1.2129 0.0005 8 1 3.0587 -1.2298 0.2500 9 6 1.3420 -2.4107 -0.3243 10 6 0.1921 -2.3872 -1.1358 11 6 -0.4439 -3.5520 -1.4512 12 6 -1.6704 -3.5186 -2.3261 13 9 -2.1499 -4.8204 -2.5068 14 9 -2.6580 -2.7385 -1.7150 15 9 -1.3421 -2.9658 -3.5686 16 6 0.0242 -4.7686 -0.9698 17 6 1.1492 -4.8245 -0.1718 18 6 1.8237 -3.6535 0.1628 19 6 3.0292 -3.7042 1.0160 20 6 4.1852 -4.3422 0.5597 21 6 5.3064 -4.3870 1.3596 22 6 5.2905 -3.7998 2.6164 23 9 6.3935 -3.8472 3.3950 24 6 4.1485 -3.1642 3.0760 25 6 3.0197 -3.1078 2.2817 26 9 1.9078 -2.4834 2.7279 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1839 -1.4474 -1.5124 29 1 -0.4951 -5.6802 -1.2261 30 1 1.5058 -5.7765 0.1930 31 1 4.2002 -4.7997 -0.4185 32 1 6.2001 -4.8806 1.0073 33 1 4.1420 -2.7085 4.0552 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239678909.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:16 Heat of formation + Delta-G solvation = -215.224341 kcal Electronic energy + Delta-G solvation = -27470.576575 eV Core-core repulsion = 22681.080259 eV Total energy + Delta-G solvation = -4789.496317 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.06396 -49.91158 -49.69932 -48.57593 -48.53153 -40.26483 -38.89170 -35.76555 -33.75972 -31.85027 -31.52604 -30.28101 -27.44795 -26.48193 -24.08117 -23.60920 -23.03155 -21.67262 -19.82576 -19.39495 -19.20106 -19.04420 -18.23788 -17.91172 -17.51621 -16.88070 -16.73321 -16.48150 -16.15113 -15.66953 -15.45570 -15.33112 -15.17646 -15.16214 -14.99833 -14.96375 -14.77094 -14.72412 -14.49820 -14.23765 -13.73886 -13.41276 -13.15133 -12.95625 -12.86286 -12.74334 -12.61787 -12.36260 -12.16658 -11.68488 -11.56606 -11.18392 -10.01748 -9.79737 -9.49701 -9.22329 -8.73926 -6.43386 -0.04398 0.17622 0.58162 0.92281 1.35384 1.43821 1.48868 1.83823 2.13914 2.45658 2.58505 2.98618 3.01906 3.26140 3.31776 3.60073 3.67879 3.82013 3.93187 4.05733 4.34861 4.43043 4.59084 4.91317 4.97455 4.99258 5.06234 5.11385 5.15760 5.22932 5.36952 5.42831 5.70065 5.79797 5.90645 5.98356 6.14847 6.43684 6.78270 6.81458 8.20024 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.005105 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.808801 B = 5483.412233 C = 7124.101919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.039 3.961 3 Si 0.969 3.031 4 H -0.255 1.255 5 H -0.262 1.262 6 H -0.268 1.268 7 C -0.456 4.456 8 H 0.079 0.921 9 C 0.103 3.897 10 C -0.132 4.132 11 C -0.164 4.164 12 C 0.510 3.490 13 F -0.178 7.178 14 F -0.188 7.188 15 F -0.187 7.187 16 C -0.210 4.210 17 C -0.062 4.062 18 C -0.175 4.175 19 C -0.051 4.051 20 C -0.060 4.060 21 C -0.149 4.149 22 C 0.108 3.892 23 F -0.136 7.136 24 C -0.198 4.198 25 C 0.120 3.880 26 F -0.140 7.140 27 H 0.292 0.708 28 H 0.112 0.888 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.159 0.841 32 H 0.172 0.828 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.359 -5.739 0.589 8.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.179 4.179 3 Si 0.790 3.210 4 H -0.178 1.178 5 H -0.186 1.186 6 H -0.193 1.193 7 C -0.484 4.484 8 H 0.097 0.903 9 C 0.100 3.900 10 C -0.151 4.151 11 C -0.165 4.165 12 C 0.456 3.544 13 F -0.159 7.159 14 F -0.170 7.170 15 F -0.168 7.168 16 C -0.230 4.230 17 C -0.080 4.080 18 C -0.176 4.176 19 C -0.052 4.052 20 C -0.078 4.078 21 C -0.167 4.167 22 C 0.089 3.911 23 F -0.115 7.115 24 C -0.217 4.217 25 C 0.100 3.900 26 F -0.119 7.119 27 H 0.103 0.897 28 H 0.129 0.871 29 H 0.148 0.852 30 H 0.154 0.846 31 H 0.177 0.823 32 H 0.190 0.810 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.105 -5.547 0.628 8.273 hybrid contribution -0.545 1.242 0.180 1.369 sum 5.560 -4.305 0.808 7.078 Atomic orbital electron populations 1.69805 1.08914 1.30966 1.33811 1.26726 0.95394 1.04493 0.91257 0.85321 0.79823 0.76776 0.79064 1.17805 1.18648 1.19305 1.19622 0.97335 0.91346 1.40121 0.90294 1.17691 0.90750 0.92656 0.88908 1.20792 0.98625 0.95803 0.99908 1.19630 0.96230 0.97269 1.03378 1.18554 0.84281 0.72900 0.78687 1.93096 1.89644 1.37572 1.95590 1.93163 1.65029 1.75599 1.83166 1.93144 1.92680 1.85887 1.45105 1.20351 1.00960 0.95284 1.06370 1.20859 0.94071 0.96917 0.96140 1.18759 0.99650 0.93733 1.05491 1.18964 0.95510 0.98748 0.91948 1.21263 0.89593 0.96655 1.00278 1.21332 1.00920 1.02223 0.92256 1.17369 0.82583 1.00734 0.90455 1.91489 1.50872 1.94780 1.74356 1.20997 0.92023 1.06015 1.02704 1.17790 0.83209 0.95671 0.93319 1.91503 1.51279 1.80060 1.89049 0.89738 0.87061 0.85248 0.84611 0.82304 0.81028 0.82915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.51 10.87 21.85 0.24 -40.27 16 2 C 0.04 1.83 5.18 85.29 0.44 2.27 16 3 Si 0.97 36.69 29.59 68.60 2.03 38.72 16 4 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 5 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 6 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 7 C -0.46 -22.40 7.48 23.35 0.17 -22.23 16 8 H 0.08 3.81 7.08 -2.91 -0.02 3.79 16 9 C 0.10 5.02 5.46 -21.11 -0.12 4.91 16 10 C -0.13 -6.51 8.12 22.46 0.18 -6.32 16 11 C -0.16 -7.22 5.34 -20.12 -0.11 -7.32 16 12 C 0.51 20.58 3.30 71.23 0.24 20.81 16 13 F -0.18 -6.42 15.93 44.97 0.72 -5.71 16 14 F -0.19 -7.95 17.22 44.97 0.77 -7.17 16 15 F -0.19 -7.44 17.23 44.97 0.77 -6.67 16 16 C -0.21 -8.33 9.41 22.39 0.21 -8.11 16 17 C -0.06 -2.37 9.73 22.46 0.22 -2.15 16 18 C -0.17 -7.42 5.06 -19.61 -0.10 -7.52 16 19 C -0.05 -1.86 4.40 -20.00 -0.09 -1.95 16 20 C -0.06 -1.69 9.74 22.52 0.22 -1.47 16 21 C -0.15 -3.56 10.01 22.28 0.22 -3.34 16 22 C 0.11 2.92 7.30 22.46 0.16 3.09 16 23 F -0.14 -3.50 17.26 44.97 0.78 -2.72 16 24 C -0.20 -6.11 9.99 22.32 0.22 -5.89 16 25 C 0.12 4.51 6.49 22.65 0.15 4.66 16 26 F -0.14 -6.23 16.12 44.97 0.73 -5.50 16 27 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 28 H 0.11 5.87 6.12 -2.91 -0.02 5.85 16 29 H 0.13 4.46 7.12 -2.91 -0.02 4.43 16 30 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 31 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 32 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 33 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -54.44 313.40 9.26 -45.18 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 1.20 Total: 14.71 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 2.03 Total: -30.57 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.24 Total: -40.27 kcal Atomic # 9 Polarization: -31.54 SS G_CDS: 3.77 Total: -27.78 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 2.03 Total: 38.72 kcal Total: -54.44 9.26 -45.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239678909.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.044 kcal (2) G-P(sol) polarization free energy of solvation -54.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds