Wall clock time and date at job start Tue Mar 31 2020 15:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30803 * 1 3 3 Si 1.86796 * 119.99918 * 2 1 4 4 H 1.48499 * 109.47612 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47130 * 120.00659 * 3 2 1 6 6 H 1.48509 * 109.47267 * 240.00352 * 3 2 1 7 7 C 1.39997 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99918 * 154.60164 * 7 2 1 9 9 C 1.41015 * 119.99948 * 334.60165 * 7 2 1 10 10 C 1.40955 * 120.11651 * 334.26318 * 9 7 2 11 11 C 1.36221 * 119.87761 * 179.73483 * 10 9 7 12 12 C 1.39981 * 120.11894 * 0.51796 * 11 10 9 13 13 C 1.47938 * 119.88218 * 179.73408 * 12 11 10 14 14 C 1.39657 * 120.14705 * 310.02365 * 13 12 11 15 15 C 1.37878 * 119.91868 * 180.02562 * 14 13 12 16 16 C 1.38439 * 120.23072 * 359.97438 * 15 14 13 17 17 C 1.38481 * 120.29448 * 0.02562 * 16 15 14 18 18 F 1.35104 * 119.95753 * 180.02562 * 17 16 15 19 19 C 1.38439 * 120.07508 * 359.72711 * 17 16 15 20 20 F 1.35100 * 120.11368 * 180.29698 * 19 17 16 21 21 C 1.39940 * 120.23227 * 359.75879 * 12 11 10 22 22 C 1.36255 * 120.12237 * 359.97438 * 21 12 11 23 23 C 1.50697 * 120.06099 * 180.02562 * 22 21 12 24 24 F 1.39904 * 109.46999 * 359.97438 * 23 22 21 25 25 F 1.39899 * 109.47211 * 119.98105 * 23 22 21 26 26 F 1.39902 * 109.47065 * 239.97818 * 23 22 21 27 27 H 0.97002 * 120.00265 * 174.17331 * 1 2 3 28 28 H 1.08007 * 120.05836 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.93593 * 180.25347 * 11 10 9 30 30 H 1.07997 * 120.03604 * 359.97438 * 14 13 12 31 31 H 1.08000 * 119.88571 * 179.97438 * 15 14 13 32 32 H 1.07997 * 119.85237 * 180.02562 * 16 15 14 33 33 H 1.08000 * 119.94041 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 1.2771 2.7465 0.0006 5 1 3.0958 1.6963 1.2124 6 1 3.0957 1.6965 -1.2126 7 6 2.0080 -1.2124 -0.0005 8 1 3.0097 -1.2574 -0.4017 9 6 1.4051 -2.3749 0.5227 10 6 0.3942 -2.2689 1.4993 11 6 -0.1886 -3.3948 1.9975 12 6 0.2222 -4.6557 1.5493 13 6 -0.4102 -5.8752 2.0982 14 6 -0.5258 -6.0443 3.4797 15 6 -1.1156 -7.1830 3.9862 16 6 -1.5945 -8.1597 3.1300 17 6 -1.4848 -8.0016 1.7587 18 9 -1.9550 -8.9589 0.9293 19 6 -0.8994 -6.8608 1.2365 20 9 -0.7973 -6.7030 -0.1013 21 6 1.2295 -4.7667 0.5842 22 6 1.8153 -3.6467 0.0753 23 6 2.8994 -3.7677 -0.9644 24 9 3.1293 -5.1193 -1.2432 25 9 2.4996 -3.1117 -2.1336 26 9 4.0758 -3.1846 -0.4815 27 1 -0.4850 -0.8357 -0.0853 28 1 0.0797 -1.2967 1.8491 29 1 -0.9661 -3.3146 2.7428 30 1 -0.1528 -5.2844 4.1504 31 1 -1.2043 -7.3134 5.0546 32 1 -2.0558 -9.0490 3.5334 33 1 1.5431 -5.7418 0.2420 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239706494.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:44 Heat of formation + Delta-G solvation = -214.678665 kcal Electronic energy + Delta-G solvation = -27538.409454 eV Core-core repulsion = 22748.936800 eV Total energy + Delta-G solvation = -4789.472655 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.22120 -49.18215 -48.21331 -46.79622 -46.59538 -39.01914 -37.80216 -34.52836 -32.00455 -30.65563 -30.07354 -28.90380 -26.02826 -24.65950 -22.91369 -22.53115 -21.10062 -20.52257 -18.52181 -17.84220 -17.52472 -17.51268 -17.09264 -16.74332 -16.14939 -16.02063 -15.11712 -14.70376 -14.66949 -14.41745 -14.29036 -14.05292 -13.87992 -13.61008 -13.50536 -13.17601 -12.96653 -12.87997 -12.85291 -12.54730 -12.34855 -12.09184 -11.90674 -11.74028 -11.54788 -11.41441 -11.22393 -10.71013 -10.57780 -10.12792 -9.88427 -9.39496 -8.91954 -8.57336 -8.30725 -7.78364 -7.60321 -4.93016 1.07070 1.13501 2.25655 2.42403 2.99311 3.04714 3.19940 3.57969 3.73078 3.75286 3.97253 4.17267 4.56508 4.81820 4.83585 4.93482 5.02800 5.09622 5.23184 5.27178 5.53797 5.78152 5.88759 5.93451 6.05247 6.13060 6.27143 6.42564 6.56122 6.60430 6.92304 6.93294 7.15999 7.26316 7.34286 7.47006 7.65164 7.78661 8.20007 8.34622 9.58914 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016217 B = 0.004236 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.163178 B = 6607.645841 C = 7596.323963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.038 3.962 3 Si 1.066 2.934 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.477 4.477 8 H 0.092 0.908 9 C 0.128 3.872 10 C -0.213 4.213 11 C -0.034 4.034 12 C -0.230 4.230 13 C 0.011 3.989 14 C -0.110 4.110 15 C -0.098 4.098 16 C -0.154 4.154 17 C 0.067 3.933 18 F -0.136 7.136 19 C 0.053 3.947 20 F -0.125 7.125 21 C 0.011 3.989 22 C -0.309 4.309 23 C 0.522 3.478 24 F -0.198 7.198 25 F -0.183 7.183 26 F -0.189 7.189 27 H 0.305 0.695 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.923 -6.665 5.754 8.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.188 4.188 3 Si 0.888 3.112 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.502 4.502 8 H 0.110 0.890 9 C 0.124 3.876 10 C -0.232 4.232 11 C -0.053 4.053 12 C -0.231 4.231 13 C 0.010 3.990 14 C -0.128 4.128 15 C -0.116 4.116 16 C -0.173 4.173 17 C 0.047 3.953 18 F -0.115 7.115 19 C 0.033 3.967 20 F -0.103 7.103 21 C -0.007 4.007 22 C -0.311 4.311 23 C 0.468 3.532 24 F -0.180 7.180 25 F -0.165 7.165 26 F -0.171 7.171 27 H 0.120 0.880 28 H 0.134 0.866 29 H 0.120 0.880 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.183 -5.049 5.674 7.686 hybrid contribution 0.229 -2.032 -0.695 2.160 sum -0.954 -7.081 4.978 8.708 Atomic orbital electron populations 1.70462 1.08271 1.35030 1.24365 1.27326 0.95536 1.04883 0.91068 0.83602 0.75816 0.73079 0.78719 1.19337 1.19383 1.19469 1.21063 1.03310 0.93928 1.31894 0.88961 1.17272 0.90175 0.90787 0.89392 1.20817 1.03101 0.97664 1.01628 1.20443 0.96568 0.91510 0.96734 1.17576 1.06340 0.90524 1.08675 1.18856 0.95055 0.92885 0.92223 1.21299 0.99760 0.98050 0.93706 1.20930 0.97683 0.93229 0.99802 1.20929 1.04428 1.01681 0.90264 1.17637 1.02066 0.86934 0.88683 1.91490 1.86465 1.61859 1.71668 1.17928 1.04527 0.95784 0.78452 1.91517 1.94208 1.95554 1.29061 1.20153 0.92466 0.96377 0.91735 1.19178 1.08029 0.95941 1.07972 1.18248 0.81688 0.71858 0.81383 1.93054 1.95354 1.35019 1.94577 1.93144 1.90667 1.81372 1.51271 1.93108 1.51391 1.84446 1.88135 0.88035 0.86565 0.88038 0.84538 0.84808 0.84499 0.87626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.07 12.31 55.55 0.68 -17.39 16 2 C 0.04 0.87 4.93 -17.33 -0.09 0.78 16 3 Si 1.07 19.48 30.00 -169.99 -5.10 14.38 16 4 H -0.27 -4.86 7.11 56.52 0.40 -4.45 16 5 H -0.27 -4.72 7.11 56.52 0.40 -4.31 16 6 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 7 C -0.48 -11.49 7.73 -37.87 -0.29 -11.78 16 8 H 0.09 2.23 6.08 -52.49 -0.32 1.91 16 9 C 0.13 3.07 5.28 -106.80 -0.56 2.51 16 10 C -0.21 -4.79 7.88 -39.28 -0.31 -5.10 16 11 C -0.03 -0.68 9.43 -39.65 -0.37 -1.06 16 12 C -0.23 -4.65 5.34 -104.63 -0.56 -5.21 16 13 C 0.01 0.19 5.47 -104.83 -0.57 -0.39 16 14 C -0.11 -1.53 9.50 -39.18 -0.37 -1.90 16 15 C -0.10 -1.12 10.03 -39.64 -0.40 -1.52 16 16 C -0.15 -1.88 10.02 -39.42 -0.39 -2.27 16 17 C 0.07 1.03 7.30 -39.42 -0.29 0.74 16 18 F -0.14 -2.15 17.18 2.25 0.04 -2.11 16 19 C 0.05 0.94 7.17 -38.94 -0.28 0.67 16 20 F -0.12 -2.48 15.82 2.25 0.04 -2.44 16 21 C 0.01 0.24 8.19 -39.66 -0.32 -0.08 16 22 C -0.31 -7.17 5.38 -104.32 -0.56 -7.73 16 23 C 0.52 11.62 2.82 36.00 0.10 11.73 16 24 F -0.20 -4.14 15.95 2.25 0.04 -4.11 16 25 F -0.18 -4.20 16.48 2.25 0.04 -4.17 16 26 F -0.19 -4.16 15.67 2.25 0.04 -4.12 16 27 H 0.31 7.47 6.69 -40.82 -0.27 7.19 16 28 H 0.12 2.63 6.50 -52.48 -0.34 2.29 16 29 H 0.10 1.77 8.03 -52.49 -0.42 1.35 16 30 H 0.14 1.70 8.04 -52.49 -0.42 1.28 16 31 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.11 2.21 6.85 -52.49 -0.36 1.85 16 LS Contribution 309.51 15.07 4.66 4.66 Total: -1.00 -25.04 309.51 -6.62 -31.66 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -1.78 Total: 4.24 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -5.27 Total: -20.61 kcal Atomic # 7 Polarization: -18.07 SS G_CDS: 0.68 Total: -17.39 kcal Atomic # 9 Polarization: -17.13 SS G_CDS: 0.18 Total: -16.95 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.10 Total: 14.38 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -25.04 -6.62 -31.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239706494.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.014 kcal (2) G-P(sol) polarization free energy of solvation -25.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds