Wall clock time and date at job start Tue Mar 31 2020 15:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30803 * 1 3 3 Si 1.86796 * 119.99918 * 2 1 4 4 H 1.48499 * 109.47612 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47130 * 120.00659 * 3 2 1 6 6 H 1.48509 * 109.47267 * 240.00352 * 3 2 1 7 7 C 1.39997 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99918 * 154.60164 * 7 2 1 9 9 C 1.41015 * 119.99948 * 334.60165 * 7 2 1 10 10 C 1.40955 * 120.11651 * 334.26318 * 9 7 2 11 11 C 1.36221 * 119.87761 * 179.73483 * 10 9 7 12 12 C 1.39981 * 120.11894 * 0.51796 * 11 10 9 13 13 C 1.47938 * 119.88218 * 179.73408 * 12 11 10 14 14 C 1.39657 * 120.14705 * 310.02365 * 13 12 11 15 15 C 1.37878 * 119.91868 * 180.02562 * 14 13 12 16 16 C 1.38439 * 120.23072 * 359.97438 * 15 14 13 17 17 C 1.38481 * 120.29448 * 0.02562 * 16 15 14 18 18 F 1.35104 * 119.95753 * 180.02562 * 17 16 15 19 19 C 1.38439 * 120.07508 * 359.72711 * 17 16 15 20 20 F 1.35100 * 120.11368 * 180.29698 * 19 17 16 21 21 C 1.39940 * 120.23227 * 359.75879 * 12 11 10 22 22 C 1.36255 * 120.12237 * 359.97438 * 21 12 11 23 23 C 1.50697 * 120.06099 * 180.02562 * 22 21 12 24 24 F 1.39904 * 109.46999 * 359.97438 * 23 22 21 25 25 F 1.39899 * 109.47211 * 119.98105 * 23 22 21 26 26 F 1.39902 * 109.47065 * 239.97818 * 23 22 21 27 27 H 0.97002 * 120.00265 * 174.17331 * 1 2 3 28 28 H 1.08007 * 120.05836 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.93593 * 180.25347 * 11 10 9 30 30 H 1.07997 * 120.03604 * 359.97438 * 14 13 12 31 31 H 1.08000 * 119.88571 * 179.97438 * 15 14 13 32 32 H 1.07997 * 119.85237 * 180.02562 * 16 15 14 33 33 H 1.08000 * 119.94041 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 1.2771 2.7465 0.0006 5 1 3.0958 1.6963 1.2124 6 1 3.0957 1.6965 -1.2126 7 6 2.0080 -1.2124 -0.0005 8 1 3.0097 -1.2574 -0.4017 9 6 1.4051 -2.3749 0.5227 10 6 0.3942 -2.2689 1.4993 11 6 -0.1886 -3.3948 1.9975 12 6 0.2222 -4.6557 1.5493 13 6 -0.4102 -5.8752 2.0982 14 6 -0.5258 -6.0443 3.4797 15 6 -1.1156 -7.1830 3.9862 16 6 -1.5945 -8.1597 3.1300 17 6 -1.4848 -8.0016 1.7587 18 9 -1.9550 -8.9589 0.9293 19 6 -0.8994 -6.8608 1.2365 20 9 -0.7973 -6.7030 -0.1013 21 6 1.2295 -4.7667 0.5842 22 6 1.8153 -3.6467 0.0753 23 6 2.8994 -3.7677 -0.9644 24 9 3.1293 -5.1193 -1.2432 25 9 2.4996 -3.1117 -2.1336 26 9 4.0758 -3.1846 -0.4815 27 1 -0.4850 -0.8357 -0.0853 28 1 0.0797 -1.2967 1.8491 29 1 -0.9661 -3.3146 2.7428 30 1 -0.1528 -5.2844 4.1504 31 1 -1.2043 -7.3134 5.0546 32 1 -2.0558 -9.0490 3.5334 33 1 1.5431 -5.7418 0.2420 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239706494.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:43 Heat of formation + Delta-G solvation = -223.830114 kcal Electronic energy + Delta-G solvation = -27538.806291 eV Core-core repulsion = 22748.936800 eV Total energy + Delta-G solvation = -4789.869491 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.01163 -50.45967 -49.54358 -48.56661 -48.41500 -40.44679 -39.23013 -36.17820 -33.51534 -32.25966 -31.23021 -30.41730 -27.68855 -26.34096 -24.31294 -23.76712 -22.70567 -22.11159 -20.24936 -19.32244 -19.31269 -19.17103 -18.46342 -18.00104 -17.54867 -17.31884 -16.78267 -16.17770 -15.94456 -15.83091 -15.66234 -15.58962 -15.43108 -15.32559 -15.09826 -14.95630 -14.73487 -14.66767 -14.30630 -14.20880 -13.83368 -13.56155 -13.38542 -13.11692 -12.89762 -12.79095 -12.71283 -12.13572 -11.96819 -11.79714 -11.52638 -11.04712 -10.28540 -10.01685 -9.73190 -9.46610 -9.26125 -6.71204 -0.13520 -0.00940 0.53326 0.78221 1.50119 1.59013 1.79567 1.93655 2.24750 2.36003 2.55089 2.84860 3.12235 3.17348 3.32797 3.40487 3.67128 3.73459 3.91925 4.04661 4.09924 4.26225 4.33583 4.73331 4.79763 4.87124 4.92971 5.05578 5.16346 5.21090 5.32249 5.43771 5.50575 5.58344 5.76626 5.85671 5.91612 6.06304 6.46070 6.60409 7.80651 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016217 B = 0.004236 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.163178 B = 6607.645841 C = 7596.323963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.011 3.989 3 Si 1.111 2.889 4 H -0.264 1.264 5 H -0.257 1.257 6 H -0.262 1.262 7 C -0.513 4.513 8 H 0.082 0.918 9 C 0.109 3.891 10 C -0.226 4.226 11 C -0.030 4.030 12 C -0.212 4.212 13 C -0.021 4.021 14 C -0.101 4.101 15 C -0.077 4.077 16 C -0.130 4.130 17 C 0.052 3.948 18 F -0.143 7.143 19 C 0.024 3.976 20 F -0.149 7.149 21 C -0.006 4.006 22 C -0.328 4.328 23 C 0.523 3.477 24 F -0.191 7.191 25 F -0.190 7.190 26 F -0.189 7.189 27 H 0.291 0.709 28 H 0.110 0.890 29 H 0.134 0.866 30 H 0.154 0.846 31 H 0.184 0.816 32 H 0.176 0.824 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.800 -8.157 8.699 12.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.209 4.209 3 Si 0.927 3.073 4 H -0.188 1.188 5 H -0.181 1.181 6 H -0.187 1.187 7 C -0.538 4.538 8 H 0.100 0.900 9 C 0.105 3.895 10 C -0.244 4.244 11 C -0.048 4.048 12 C -0.213 4.213 13 C -0.022 4.022 14 C -0.119 4.119 15 C -0.095 4.095 16 C -0.148 4.148 17 C 0.032 3.968 18 F -0.122 7.122 19 C 0.004 3.996 20 F -0.128 7.128 21 C -0.025 4.025 22 C -0.330 4.330 23 C 0.470 3.530 24 F -0.173 7.173 25 F -0.172 7.172 26 F -0.170 7.170 27 H 0.103 0.897 28 H 0.128 0.872 29 H 0.152 0.848 30 H 0.172 0.828 31 H 0.202 0.798 32 H 0.193 0.807 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.061 -6.569 8.622 11.033 hybrid contribution 0.387 -1.919 -1.458 2.440 sum -1.674 -8.488 7.164 11.232 Atomic orbital electron populations 1.70565 1.08779 1.33918 1.26943 1.28510 0.95545 1.07331 0.89545 0.83074 0.75033 0.69749 0.79441 1.18850 1.18081 1.18656 1.21093 1.03346 0.95025 1.34375 0.90017 1.17569 0.90858 0.91169 0.89909 1.20855 1.03501 0.98253 1.01835 1.20760 0.96535 0.90743 0.96785 1.17944 1.04542 0.92048 1.06782 1.18827 0.97285 0.92151 0.93928 1.21586 0.98856 0.99455 0.92015 1.21460 0.94779 0.91123 1.02093 1.21471 1.02025 1.02782 0.88510 1.17915 1.02579 0.86282 0.90007 1.91474 1.86567 1.61876 1.72236 1.18300 1.06422 0.97249 0.77591 1.91449 1.94623 1.95840 1.30897 1.20323 0.93325 0.96001 0.92803 1.19394 1.08707 0.96349 1.08568 1.18198 0.81683 0.72062 0.81104 1.93058 1.95307 1.34370 1.94517 1.93122 1.90778 1.81613 1.51656 1.93098 1.51286 1.84513 1.88111 0.89650 0.87198 0.84841 0.82807 0.79841 0.80651 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.42 12.31 21.84 0.27 -38.15 16 2 C 0.01 0.54 4.93 85.27 0.42 0.96 16 3 Si 1.11 39.75 30.00 68.60 2.06 41.81 16 4 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 5 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 6 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 7 C -0.51 -25.73 7.73 23.38 0.18 -25.55 16 8 H 0.08 4.14 6.08 -2.91 -0.02 4.12 16 9 C 0.11 5.42 5.28 -21.28 -0.11 5.31 16 10 C -0.23 -10.34 7.88 22.47 0.18 -10.17 16 11 C -0.03 -1.19 9.43 22.22 0.21 -0.98 16 12 C -0.21 -8.49 5.34 -19.87 -0.11 -8.60 16 13 C -0.02 -0.69 5.47 -20.00 -0.11 -0.80 16 14 C -0.10 -2.38 9.50 22.53 0.21 -2.16 16 15 C -0.08 -1.28 10.03 22.23 0.22 -1.05 16 16 C -0.13 -2.47 10.02 22.38 0.22 -2.24 16 17 C 0.05 1.47 7.30 22.38 0.16 1.64 16 18 F -0.14 -4.27 17.18 44.97 0.77 -3.50 16 19 C 0.02 0.84 7.17 22.69 0.16 1.00 16 20 F -0.15 -6.07 15.82 44.97 0.71 -5.36 16 21 C -0.01 -0.27 8.19 22.22 0.18 -0.09 16 22 C -0.33 -15.74 5.38 -19.67 -0.11 -15.84 16 23 C 0.52 24.12 2.82 71.24 0.20 24.32 16 24 F -0.19 -8.17 15.95 44.97 0.72 -7.45 16 25 F -0.19 -9.10 16.48 44.97 0.74 -8.36 16 26 F -0.19 -8.55 15.67 44.97 0.70 -7.84 16 27 H 0.29 14.90 6.69 -92.71 -0.62 14.28 16 28 H 0.11 5.12 6.50 -2.91 -0.02 5.10 16 29 H 0.13 4.37 8.03 -2.91 -0.02 4.35 16 30 H 0.15 3.10 8.04 -2.91 -0.02 3.08 16 31 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 32 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 33 H 0.11 4.62 6.85 -2.91 -0.02 4.60 16 Total: -1.00 -58.00 309.51 9.25 -48.75 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 1.35 Total: 14.38 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 1.92 Total: -34.28 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.27 Total: -38.15 kcal Atomic # 9 Polarization: -36.16 SS G_CDS: 3.65 Total: -32.51 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.06 Total: 41.81 kcal Total: -58.00 9.25 -48.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239706494.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.083 kcal (2) G-P(sol) polarization free energy of solvation -57.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds