Wall clock time and date at job start Tue Mar 31 2020 15:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30775 * 1 3 3 Si 1.86808 * 119.99663 * 2 1 4 4 H 1.48506 * 109.46867 * 270.00125 * 3 2 1 5 5 H 1.48503 * 109.47239 * 29.99587 * 3 2 1 6 6 H 1.48497 * 109.47277 * 149.99914 * 3 2 1 7 7 C 1.40057 * 120.00582 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00428 * 195.46530 * 7 2 1 9 9 C 1.40872 * 119.99586 * 15.47058 * 7 2 1 10 10 C 1.40755 * 120.33247 * 25.29296 * 9 7 2 11 11 C 1.36421 * 119.98645 * 180.02562 * 10 9 7 12 12 C 1.50699 * 119.65312 * 180.02562 * 11 10 9 13 13 F 1.39900 * 109.46947 * 179.97438 * 12 11 10 14 14 F 1.39903 * 109.46896 * 299.96734 * 12 11 10 15 15 F 1.39895 * 109.47334 * 59.97184 * 12 11 10 16 16 C 1.38944 * 120.69240 * 359.97438 * 11 10 9 17 17 C 1.38063 * 120.67697 * 0.03214 * 16 11 10 18 18 C 1.39184 * 119.98348 * 0.22388 * 17 16 11 19 19 C 1.47820 * 120.34279 * 179.72301 * 18 17 16 20 20 C 1.39701 * 120.14570 * 65.00281 * 19 18 17 21 21 C 1.37878 * 119.91653 * 180.02562 * 20 19 18 22 22 C 1.38450 * 120.22993 * 0.02562 * 21 20 19 23 23 C 1.38481 * 120.30629 * 0.02562 * 22 21 20 24 24 F 1.35104 * 119.96068 * 180.02562 * 23 22 21 25 25 C 1.38435 * 120.07907 * 359.67649 * 23 22 21 26 26 F 1.35100 * 120.11774 * 180.32433 * 25 23 22 27 27 H 0.97003 * 120.00744 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00674 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.65759 * 180.02562 * 16 11 10 30 30 H 1.08001 * 120.00765 * 179.97438 * 17 16 11 31 31 H 1.07993 * 120.04509 * 0.02562 * 20 19 18 32 32 H 1.07996 * 119.88481 * 180.02562 * 21 20 19 33 33 H 1.07997 * 119.84395 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6179 0.0000 4 1 2.4891 2.0465 -1.4002 5 1 1.4390 2.6528 0.7000 6 1 3.5392 1.4404 0.7000 7 6 2.0082 -1.2129 0.0005 8 1 3.0589 -1.2297 0.2500 9 6 1.3421 -2.4109 -0.3244 10 6 0.1919 -2.3874 -1.1353 11 6 -0.4479 -3.5517 -1.4451 12 6 -1.6784 -3.5179 -2.3144 13 9 -2.1574 -4.8198 -2.4954 14 9 -2.6640 -2.7400 -1.6974 15 9 -1.3562 -2.9625 -3.5573 16 6 0.0238 -4.7686 -0.9684 17 6 1.1493 -4.8242 -0.1708 18 6 1.8209 -3.6529 0.1671 19 6 3.0232 -3.7026 1.0256 20 6 4.1820 -4.3390 0.5740 21 6 5.3006 -4.3830 1.3788 22 6 5.2796 -3.7990 2.6340 23 6 4.1358 -3.1666 3.0915 24 9 4.1232 -2.5986 4.3172 25 6 3.0074 -3.1095 2.2915 26 9 1.8931 -2.4871 2.7344 27 1 -0.4851 0.8400 -0.0004 28 1 -0.1841 -1.4477 -1.5122 29 1 -0.4955 -5.6804 -1.2244 30 1 1.5063 -5.7760 0.1941 31 1 4.2016 -4.7960 -0.4043 32 1 6.1962 -4.8748 1.0290 33 1 6.1595 -3.8368 3.2591 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239706605.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:47 Heat of formation + Delta-G solvation = -205.572901 kcal Electronic energy + Delta-G solvation = -27665.695884 eV Core-core repulsion = 22876.618085 eV Total energy + Delta-G solvation = -4789.077799 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.43747 -48.87660 -47.82775 -46.98134 -46.87854 -38.82434 -37.46264 -34.07792 -32.35659 -30.06686 -29.76704 -29.16619 -25.73404 -25.10983 -22.55294 -22.25254 -21.34869 -20.16588 -18.15985 -17.75790 -17.57681 -17.41558 -16.61150 -16.53647 -16.47784 -15.72093 -15.19075 -14.75783 -14.37948 -14.33006 -13.95826 -13.82640 -13.75109 -13.54950 -13.44849 -13.37865 -13.14253 -13.09501 -12.79309 -12.60052 -12.06303 -11.97021 -11.64597 -11.58153 -11.43491 -11.30063 -11.08855 -10.84587 -10.65445 -10.09090 -9.91784 -9.49198 -8.56974 -8.27006 -7.83428 -7.76691 -7.06357 -4.68623 1.33567 1.41924 2.21854 2.59637 2.94848 2.98430 3.00987 3.48596 3.73555 3.80951 4.18988 4.30706 4.64498 4.82228 4.87974 4.98315 5.12884 5.23560 5.38979 5.43955 5.47831 5.95530 6.14446 6.19829 6.26784 6.41875 6.51524 6.64197 6.71052 6.78537 6.95115 7.05019 7.18855 7.41569 7.53635 7.60561 7.81580 8.16270 8.48431 8.52640 9.85769 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.011877 B = 0.005402 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.991799 B = 5181.766129 C = 6691.310381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.434 4.434 8 H 0.084 0.916 9 C 0.131 3.869 10 C -0.103 4.103 11 C -0.151 4.151 12 C 0.504 3.496 13 F -0.190 7.190 14 F -0.182 7.182 15 F -0.188 7.188 16 C -0.216 4.216 17 C -0.056 4.056 18 C -0.185 4.185 19 C 0.011 3.989 20 C -0.105 4.105 21 C -0.109 4.109 22 C -0.148 4.148 23 C 0.053 3.947 24 F -0.138 7.138 25 C 0.087 3.913 26 F -0.113 7.113 27 H 0.289 0.711 28 H 0.133 0.867 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.501 -4.790 -0.002 7.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.461 4.461 8 H 0.102 0.898 9 C 0.128 3.872 10 C -0.122 4.122 11 C -0.153 4.153 12 C 0.450 3.550 13 F -0.171 7.171 14 F -0.164 7.164 15 F -0.170 7.170 16 C -0.235 4.235 17 C -0.074 4.074 18 C -0.187 4.187 19 C 0.010 3.990 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.167 4.167 23 C 0.033 3.967 24 F -0.117 7.117 25 C 0.067 3.933 26 F -0.091 7.091 27 H 0.100 0.900 28 H 0.150 0.850 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.193 -4.555 0.063 6.908 hybrid contribution -0.191 1.059 0.242 1.103 sum 5.002 -3.496 0.305 6.110 Atomic orbital electron populations 1.69727 1.07704 1.30340 1.31814 1.26021 0.94846 1.01856 0.91838 0.86230 0.80680 0.79962 0.79708 1.18776 1.19797 1.18214 1.19569 0.97534 0.90583 1.38422 0.89815 1.17342 0.90243 0.91293 0.88333 1.20916 0.97223 0.95906 0.98177 1.19416 0.95634 0.97137 1.03125 1.18773 0.84909 0.72547 0.78799 1.93080 1.89864 1.38506 1.95661 1.93176 1.65040 1.75426 1.82731 1.93142 1.92832 1.85720 1.45259 1.19975 1.00943 0.95115 1.07506 1.20442 0.94572 0.95835 0.96600 1.18381 0.99375 0.94259 1.06662 1.18732 0.94952 0.94588 0.90759 1.21308 0.91327 0.99593 1.00089 1.20858 0.98690 0.99887 0.93264 1.20896 0.96642 1.01223 0.97971 1.17675 0.95188 1.01784 0.82019 1.91474 1.97026 1.83068 1.40130 1.17940 0.83096 0.98711 0.93581 1.91563 1.49315 1.79519 1.88753 0.89953 0.84962 0.87536 0.87944 0.84805 0.85091 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.71 10.87 55.55 0.60 -18.11 16 2 C 0.08 1.77 5.18 -17.32 -0.09 1.68 16 3 Si 0.91 17.80 29.59 -169.99 -5.03 12.77 16 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.43 -10.49 7.50 -37.90 -0.28 -10.78 16 8 H 0.08 2.00 7.10 -52.48 -0.37 1.62 16 9 C 0.13 3.16 5.47 -106.55 -0.58 2.58 16 10 C -0.10 -2.48 8.12 -39.29 -0.32 -2.80 16 11 C -0.15 -3.35 5.34 -105.02 -0.56 -3.91 16 12 C 0.50 10.25 3.30 36.01 0.12 10.37 16 13 F -0.19 -3.58 15.93 2.25 0.04 -3.54 16 14 F -0.18 -3.82 17.22 2.25 0.04 -3.79 16 15 F -0.19 -3.75 17.22 2.25 0.04 -3.71 16 16 C -0.22 -4.46 9.42 -39.38 -0.37 -4.83 16 17 C -0.06 -1.14 9.73 -39.29 -0.38 -1.52 16 18 C -0.18 -4.03 5.06 -104.23 -0.53 -4.56 16 19 C 0.01 0.21 4.39 -104.85 -0.46 -0.25 16 20 C -0.10 -1.62 9.74 -39.17 -0.38 -2.01 16 21 C -0.11 -1.41 10.03 -39.63 -0.40 -1.81 16 22 C -0.15 -2.07 10.02 -39.41 -0.39 -2.47 16 23 C 0.05 0.94 7.30 -39.42 -0.29 0.65 16 24 F -0.14 -2.47 17.18 2.25 0.04 -2.43 16 25 C 0.09 1.76 6.51 -38.92 -0.25 1.51 16 26 F -0.11 -2.62 16.07 2.25 0.04 -2.59 16 27 H 0.29 6.39 8.30 -40.82 -0.34 6.05 16 28 H 0.13 3.32 6.12 -52.49 -0.32 2.99 16 29 H 0.11 1.99 7.12 -52.49 -0.37 1.61 16 30 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 313.37 15.07 4.72 4.72 Total: -1.00 -25.47 313.37 -6.58 -32.05 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -1.89 Total: 2.76 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -5.17 Total: -18.14 kcal Atomic # 7 Polarization: -18.71 SS G_CDS: 0.60 Total: -18.11 kcal Atomic # 9 Polarization: -16.25 SS G_CDS: 0.19 Total: -16.06 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -25.47 -6.58 -32.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239706605.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.522 kcal (2) G-P(sol) polarization free energy of solvation -25.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds