Wall clock time and date at job start Tue Mar 31 2020 15:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30775 * 1 3 3 Si 1.86808 * 119.99663 * 2 1 4 4 H 1.48506 * 109.46867 * 270.00125 * 3 2 1 5 5 H 1.48503 * 109.47239 * 29.99587 * 3 2 1 6 6 H 1.48497 * 109.47277 * 149.99914 * 3 2 1 7 7 C 1.40057 * 120.00582 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00428 * 195.46530 * 7 2 1 9 9 C 1.40872 * 119.99586 * 15.47058 * 7 2 1 10 10 C 1.40755 * 120.33247 * 25.29296 * 9 7 2 11 11 C 1.36421 * 119.98645 * 180.02562 * 10 9 7 12 12 C 1.50699 * 119.65312 * 180.02562 * 11 10 9 13 13 F 1.39900 * 109.46947 * 179.97438 * 12 11 10 14 14 F 1.39903 * 109.46896 * 299.96734 * 12 11 10 15 15 F 1.39895 * 109.47334 * 59.97184 * 12 11 10 16 16 C 1.38944 * 120.69240 * 359.97438 * 11 10 9 17 17 C 1.38063 * 120.67697 * 0.03214 * 16 11 10 18 18 C 1.39184 * 119.98348 * 0.22388 * 17 16 11 19 19 C 1.47820 * 120.34279 * 179.72301 * 18 17 16 20 20 C 1.39701 * 120.14570 * 65.00281 * 19 18 17 21 21 C 1.37878 * 119.91653 * 180.02562 * 20 19 18 22 22 C 1.38450 * 120.22993 * 0.02562 * 21 20 19 23 23 C 1.38481 * 120.30629 * 0.02562 * 22 21 20 24 24 F 1.35104 * 119.96068 * 180.02562 * 23 22 21 25 25 C 1.38435 * 120.07907 * 359.67649 * 23 22 21 26 26 F 1.35100 * 120.11774 * 180.32433 * 25 23 22 27 27 H 0.97003 * 120.00744 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00674 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.65759 * 180.02562 * 16 11 10 30 30 H 1.08001 * 120.00765 * 179.97438 * 17 16 11 31 31 H 1.07993 * 120.04509 * 0.02562 * 20 19 18 32 32 H 1.07996 * 119.88481 * 180.02562 * 21 20 19 33 33 H 1.07997 * 119.84395 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6179 0.0000 4 1 2.4891 2.0465 -1.4002 5 1 1.4390 2.6528 0.7000 6 1 3.5392 1.4404 0.7000 7 6 2.0082 -1.2129 0.0005 8 1 3.0589 -1.2297 0.2500 9 6 1.3421 -2.4109 -0.3244 10 6 0.1919 -2.3874 -1.1353 11 6 -0.4479 -3.5517 -1.4451 12 6 -1.6784 -3.5179 -2.3144 13 9 -2.1574 -4.8198 -2.4954 14 9 -2.6640 -2.7400 -1.6974 15 9 -1.3562 -2.9625 -3.5573 16 6 0.0238 -4.7686 -0.9684 17 6 1.1493 -4.8242 -0.1708 18 6 1.8209 -3.6529 0.1671 19 6 3.0232 -3.7026 1.0256 20 6 4.1820 -4.3390 0.5740 21 6 5.3006 -4.3830 1.3788 22 6 5.2796 -3.7990 2.6340 23 6 4.1358 -3.1666 3.0915 24 9 4.1232 -2.5986 4.3172 25 6 3.0074 -3.1095 2.2915 26 9 1.8931 -2.4871 2.7344 27 1 -0.4851 0.8400 -0.0004 28 1 -0.1841 -1.4477 -1.5122 29 1 -0.4955 -5.6804 -1.2244 30 1 1.5063 -5.7760 0.1941 31 1 4.2016 -4.7960 -0.4043 32 1 6.1962 -4.8748 1.0290 33 1 6.1595 -3.8368 3.2591 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239706605.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:46 Heat of formation + Delta-G solvation = -215.284941 kcal Electronic energy + Delta-G solvation = -27666.117029 eV Core-core repulsion = 22876.618085 eV Total energy + Delta-G solvation = -4789.498945 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.07632 -50.30117 -49.35496 -48.58618 -48.54424 -40.30039 -38.93563 -35.79206 -33.87192 -31.71688 -31.09670 -30.62603 -27.48045 -26.67499 -23.98924 -23.60456 -22.99316 -21.73478 -19.85005 -19.40653 -19.21232 -18.81866 -18.26215 -17.97470 -17.86801 -17.16630 -16.82529 -16.23655 -15.88997 -15.65652 -15.51525 -15.46535 -15.21117 -15.18398 -15.07304 -15.00815 -14.78295 -14.73451 -14.41309 -13.95868 -13.70810 -13.46369 -13.17192 -13.00868 -12.84868 -12.84112 -12.64270 -12.39224 -12.16562 -11.72586 -11.54007 -11.20020 -10.00547 -9.60239 -9.51502 -9.37085 -8.76910 -6.46595 0.01472 0.12047 0.59029 0.90115 1.32276 1.43041 1.44368 1.82361 2.11774 2.46557 2.60448 2.96362 2.99148 3.24830 3.31275 3.55370 3.68492 3.81621 4.06488 4.15157 4.34904 4.38716 4.57415 4.93767 4.95276 5.00739 5.05703 5.16359 5.21835 5.29782 5.34626 5.46447 5.68578 5.78476 5.88159 5.99355 6.12258 6.40481 6.75214 6.78418 8.17435 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.011877 B = 0.005402 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.991799 B = 5181.766129 C = 6691.310381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.037 3.963 3 Si 0.970 3.030 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.458 4.458 8 H 0.077 0.923 9 C 0.103 3.897 10 C -0.132 4.132 11 C -0.162 4.162 12 C 0.510 3.490 13 F -0.177 7.177 14 F -0.188 7.188 15 F -0.186 7.186 16 C -0.210 4.210 17 C -0.061 4.061 18 C -0.179 4.179 19 C -0.018 4.018 20 C -0.099 4.099 21 C -0.085 4.085 22 C -0.129 4.129 23 C 0.038 3.962 24 F -0.146 7.146 25 C 0.048 3.952 26 F -0.146 7.146 27 H 0.292 0.708 28 H 0.112 0.888 29 H 0.131 0.869 30 H 0.137 0.863 31 H 0.154 0.846 32 H 0.184 0.816 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.254 -6.759 -0.109 10.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.180 4.180 3 Si 0.791 3.209 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.486 4.486 8 H 0.095 0.905 9 C 0.100 3.900 10 C -0.151 4.151 11 C -0.164 4.164 12 C 0.456 3.544 13 F -0.158 7.158 14 F -0.170 7.170 15 F -0.167 7.167 16 C -0.229 4.229 17 C -0.078 4.078 18 C -0.181 4.181 19 C -0.019 4.019 20 C -0.117 4.117 21 C -0.102 4.102 22 C -0.147 4.147 23 C 0.018 3.982 24 F -0.125 7.125 25 C 0.028 3.972 26 F -0.125 7.125 27 H 0.103 0.897 28 H 0.130 0.870 29 H 0.149 0.851 30 H 0.155 0.845 31 H 0.172 0.828 32 H 0.201 0.799 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.947 -6.541 -0.050 10.293 hybrid contribution -0.950 1.440 0.305 1.752 sum 6.996 -5.101 0.255 8.662 Atomic orbital electron populations 1.69792 1.08917 1.31061 1.33755 1.26748 0.95439 1.04576 0.91216 0.85353 0.79217 0.76355 0.79969 1.17815 1.19376 1.18346 1.19606 0.97323 0.91478 1.40196 0.90479 1.17683 0.90801 0.92595 0.88892 1.20796 0.98543 0.95896 0.99898 1.19631 0.96089 0.97216 1.03429 1.18530 0.84313 0.72930 0.78607 1.93098 1.89652 1.37512 1.95579 1.93164 1.65157 1.75721 1.82918 1.93142 1.92821 1.85782 1.45001 1.20367 1.00822 0.95337 1.06409 1.20847 0.94087 0.96842 0.96063 1.18782 0.99971 0.93875 1.05444 1.18800 0.95728 0.96947 0.90451 1.21605 0.90617 0.98259 1.01204 1.21416 0.99224 0.97748 0.91844 1.21426 0.96150 0.98527 0.98592 1.17994 0.95686 1.02776 0.81737 1.91449 1.97091 1.83412 1.40558 1.18370 0.83355 1.00451 0.95066 1.91467 1.51180 1.80570 1.89237 0.89696 0.87005 0.85075 0.84510 0.82809 0.79869 0.80839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.59 10.87 21.85 0.24 -41.35 16 2 C 0.04 1.83 5.18 85.29 0.44 2.27 16 3 Si 0.97 37.75 29.59 68.60 2.03 39.78 16 4 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 5 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 7 C -0.46 -23.20 7.50 23.36 0.18 -23.02 16 8 H 0.08 3.84 7.10 -2.91 -0.02 3.82 16 9 C 0.10 5.17 5.47 -21.11 -0.12 5.05 16 10 C -0.13 -6.62 8.12 22.46 0.18 -6.44 16 11 C -0.16 -7.25 5.34 -20.12 -0.11 -7.36 16 12 C 0.51 20.80 3.30 71.24 0.24 21.03 16 13 F -0.18 -6.44 15.93 44.97 0.72 -5.73 16 14 F -0.19 -8.04 17.22 44.97 0.77 -7.27 16 15 F -0.19 -7.46 17.22 44.97 0.77 -6.69 16 16 C -0.21 -8.43 9.42 22.40 0.21 -8.22 16 17 C -0.06 -2.36 9.73 22.46 0.22 -2.14 16 18 C -0.18 -7.83 5.06 -19.61 -0.10 -7.93 16 19 C -0.02 -0.69 4.39 -20.01 -0.09 -0.78 16 20 C -0.10 -2.72 9.74 22.54 0.22 -2.50 16 21 C -0.08 -1.74 10.03 22.24 0.22 -1.51 16 22 C -0.13 -3.02 10.02 22.38 0.22 -2.80 16 23 C 0.04 1.28 7.30 22.37 0.16 1.44 16 24 F -0.15 -5.16 17.18 44.97 0.77 -4.39 16 25 C 0.05 1.94 6.51 22.70 0.15 2.09 16 26 F -0.15 -7.14 16.07 44.97 0.72 -6.41 16 27 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 28 H 0.11 5.98 6.12 -2.91 -0.02 5.97 16 29 H 0.13 4.55 7.12 -2.91 -0.02 4.53 16 30 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 31 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 32 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.17 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -59.73 313.37 9.26 -50.47 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 1.20 Total: 12.39 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 2.03 Total: -30.81 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.24 Total: -41.35 kcal Atomic # 9 Polarization: -34.25 SS G_CDS: 3.76 Total: -30.49 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -59.73 9.26 -50.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239706605.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.812 kcal (2) G-P(sol) polarization free energy of solvation -59.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds