Wall clock time and date at job start Tue Mar 31 2020 15:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30778 * 1 3 3 Si 1.86798 * 119.99939 * 2 1 4 4 H 1.48499 * 109.46913 * 269.99587 * 3 2 1 5 5 H 1.48490 * 109.47485 * 29.99974 * 3 2 1 6 6 H 1.48504 * 109.47162 * 150.00066 * 3 2 1 7 7 C 1.40063 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99929 * 195.47532 * 7 2 1 9 9 C 1.40870 * 120.00088 * 15.47367 * 7 2 1 10 10 C 1.40756 * 120.32862 * 25.31650 * 9 7 2 11 11 C 1.36425 * 119.98363 * 179.97438 * 10 9 7 12 12 C 1.38936 * 120.69414 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.66233 * 180.02562 * 12 11 10 14 14 F 1.39894 * 109.47180 * 269.98300 * 13 12 11 15 15 F 1.39900 * 109.46609 * 29.98206 * 13 12 11 16 16 F 1.39898 * 109.47151 * 149.97912 * 13 12 11 17 17 C 1.38068 * 120.68024 * 0.02562 * 12 11 10 18 18 C 1.39193 * 119.97679 * 359.97438 * 17 12 11 19 19 C 1.47829 * 120.33569 * 179.97438 * 18 17 12 20 20 C 1.39695 * 120.15154 * 65.00243 * 19 18 17 21 21 C 1.37866 * 119.91762 * 179.97438 * 20 19 18 22 22 C 1.38443 * 120.23341 * 359.97438 * 21 20 19 23 23 C 1.38495 * 120.30495 * 359.97438 * 22 21 20 24 24 F 1.35093 * 119.95864 * 180.02562 * 23 22 21 25 25 C 1.38424 * 120.07540 * 359.74626 * 23 22 21 26 26 F 1.35106 * 120.11635 * 180.27265 * 25 23 22 27 27 H 0.97004 * 120.00036 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.00906 * 359.95616 * 10 9 7 29 29 H 1.08002 * 119.65053 * 179.97438 * 11 10 9 30 30 H 1.07997 * 120.00990 * 179.71844 * 17 12 11 31 31 H 1.07997 * 120.04147 * 359.95021 * 20 19 18 32 32 H 1.08000 * 119.88433 * 180.02562 * 21 20 19 33 33 H 1.08001 * 119.84777 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.4893 2.0463 -1.4001 5 1 1.4393 2.6526 0.7000 6 1 3.5394 1.4402 0.7000 7 6 2.0081 -1.2130 0.0005 8 1 3.0587 -1.2299 0.2501 9 6 1.3420 -2.4110 -0.3244 10 6 0.1921 -2.3874 -1.1358 11 6 -0.4472 -3.5518 -1.4466 12 6 0.0247 -4.7688 -0.9704 13 6 -0.6993 -6.0411 -1.3286 14 9 -1.6782 -6.3076 -0.3654 15 9 -1.3049 -5.8960 -2.5813 16 9 0.2133 -7.1006 -1.3717 17 6 1.1500 -4.8245 -0.1724 18 6 1.8241 -3.6536 0.1621 19 6 3.0295 -3.7040 1.0164 20 6 4.1859 -4.3422 0.5613 21 6 5.3074 -4.3859 1.3619 22 6 5.2923 -3.7989 2.6156 23 6 4.1514 -3.1628 3.0758 24 9 4.1445 -2.5919 4.3001 25 6 3.0200 -3.1064 2.2802 26 9 1.9083 -2.4813 2.7261 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1842 -1.4476 -1.5121 29 1 -1.3292 -3.5274 -2.0693 30 1 1.5047 -5.7759 0.1955 31 1 4.2011 -4.8010 -0.4162 32 1 6.2013 -4.8790 1.0094 33 1 6.1743 -3.8372 3.2378 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239707477.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:51 Heat of formation + Delta-G solvation = -208.852532 kcal Electronic energy + Delta-G solvation = -27632.475116 eV Core-core repulsion = 22843.255102 eV Total energy + Delta-G solvation = -4789.220014 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.40073 -48.88045 -47.83292 -46.95005 -46.86311 -38.81733 -37.42284 -34.21972 -32.14014 -30.42668 -29.84047 -28.45630 -26.90989 -23.98062 -23.07432 -22.23849 -21.05889 -20.29737 -17.87101 -17.73733 -17.62128 -17.52463 -17.00859 -16.56402 -16.10666 -15.77567 -15.50851 -14.44486 -14.35647 -14.32488 -13.97965 -13.89322 -13.77790 -13.54644 -13.44564 -13.38248 -13.14172 -13.09339 -12.76763 -12.50343 -12.32514 -11.92064 -11.64622 -11.61033 -11.48011 -11.28353 -11.10624 -10.88017 -10.64365 -10.13168 -9.83085 -9.55544 -8.55316 -8.26433 -7.89099 -7.70447 -7.15331 -4.81342 1.35591 1.42649 2.28573 2.62907 2.88978 2.92161 2.93143 3.55007 3.66245 3.82426 4.16099 4.28779 4.81002 4.82785 4.91471 5.03097 5.14012 5.24190 5.40961 5.45911 5.49143 5.90648 6.05749 6.16938 6.31132 6.43521 6.52887 6.62898 6.70882 6.76550 6.92511 7.16711 7.19159 7.31708 7.56422 7.62778 7.82555 8.19021 8.42855 8.49959 9.74292 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.010021 B = 0.005888 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.488181 B = 4754.512403 C = 6695.882886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.076 3.924 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.423 4.423 8 H 0.085 0.915 9 C 0.148 3.852 10 C -0.160 4.160 11 C -0.054 4.054 12 C -0.320 4.320 13 C 0.516 3.484 14 F -0.194 7.194 15 F -0.192 7.192 16 F -0.194 7.194 17 C -0.007 4.007 18 C -0.203 4.203 19 C 0.012 3.988 20 C -0.105 4.105 21 C -0.108 4.108 22 C -0.148 4.148 23 C 0.054 3.946 24 F -0.138 7.138 25 C 0.086 3.914 26 F -0.114 7.114 27 H 0.290 0.710 28 H 0.130 0.870 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.783 -4.169 0.123 7.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.449 4.449 8 H 0.103 0.897 9 C 0.145 3.855 10 C -0.179 4.179 11 C -0.072 4.072 12 C -0.322 4.322 13 C 0.462 3.538 14 F -0.176 7.176 15 F -0.174 7.174 16 F -0.175 7.175 17 C -0.025 4.025 18 C -0.204 4.204 19 C 0.011 3.989 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.167 4.167 23 C 0.033 3.967 24 F -0.117 7.117 25 C 0.066 3.934 26 F -0.092 7.092 27 H 0.101 0.899 28 H 0.147 0.853 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.490 -3.977 0.206 6.782 hybrid contribution -0.104 0.766 0.355 0.850 sum 5.385 -3.212 0.561 6.295 Atomic orbital electron populations 1.69762 1.07824 1.30442 1.30359 1.26085 0.94883 1.02017 0.91742 0.86196 0.80753 0.79683 0.79810 1.18667 1.19689 1.18091 1.19737 0.97609 0.90777 1.36803 0.89735 1.17594 0.90208 0.90838 0.86885 1.21021 0.98696 0.96899 1.01268 1.20149 0.97946 0.91624 0.97529 1.18909 1.04645 0.90810 1.17835 1.18535 0.76648 0.85009 0.73586 1.93147 1.65056 1.95019 1.64362 1.93092 1.84731 1.95937 1.43604 1.93088 1.67325 1.60864 1.96267 1.20199 0.92498 0.96386 0.93433 1.18122 0.99947 0.93791 1.08559 1.18691 0.94867 0.94629 0.90694 1.21330 0.91325 0.99527 1.00139 1.20860 0.98680 0.99816 0.93287 1.20902 0.96701 1.01144 0.97959 1.17669 0.95180 1.01727 0.82081 1.91471 1.97028 1.82950 1.40241 1.17941 0.83115 0.98779 0.93594 1.91561 1.49561 1.79419 1.88653 0.89871 0.85267 0.88167 0.87868 0.84774 0.85060 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.72 10.87 55.55 0.60 -17.11 16 2 C 0.08 1.71 5.18 -17.32 -0.09 1.62 16 3 Si 0.91 17.18 29.59 -169.99 -5.03 12.15 16 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 5 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 6 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 7 C -0.42 -10.01 7.47 -37.90 -0.28 -10.29 16 8 H 0.08 1.98 7.07 -52.48 -0.37 1.60 16 9 C 0.15 3.53 5.46 -106.56 -0.58 2.95 16 10 C -0.16 -3.75 8.63 -39.28 -0.34 -4.09 16 11 C -0.05 -1.17 9.31 -39.98 -0.37 -1.54 16 12 C -0.32 -6.76 5.47 -104.42 -0.57 -7.33 16 13 C 0.52 9.96 3.36 36.01 0.12 10.08 16 14 F -0.19 -3.79 17.30 2.25 0.04 -3.75 16 15 F -0.19 -3.60 16.43 2.25 0.04 -3.56 16 16 F -0.19 -3.56 16.43 2.25 0.04 -3.52 16 17 C -0.01 -0.14 9.07 -39.29 -0.36 -0.50 16 18 C -0.20 -4.45 5.06 -104.23 -0.53 -4.98 16 19 C 0.01 0.24 4.40 -104.84 -0.46 -0.22 16 20 C -0.10 -1.66 9.74 -39.17 -0.38 -2.04 16 21 C -0.11 -1.43 10.03 -39.64 -0.40 -1.82 16 22 C -0.15 -2.09 10.02 -39.41 -0.39 -2.48 16 23 C 0.05 0.94 7.30 -39.42 -0.29 0.65 16 24 F -0.14 -2.47 17.18 2.25 0.04 -2.43 16 25 C 0.09 1.74 6.49 -38.93 -0.25 1.49 16 26 F -0.11 -2.63 16.03 2.25 0.04 -2.59 16 27 H 0.29 6.09 8.30 -40.82 -0.34 5.75 16 28 H 0.13 3.08 6.12 -52.49 -0.32 2.76 16 29 H 0.10 2.01 7.57 -52.49 -0.40 1.61 16 30 H 0.10 1.96 7.58 -52.49 -0.40 1.56 16 31 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 312.94 15.07 4.72 4.72 Total: -1.00 -24.88 312.94 -6.59 -31.47 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -1.89 Total: 3.13 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -5.18 Total: -18.49 kcal Atomic # 7 Polarization: -17.72 SS G_CDS: 0.60 Total: -17.11 kcal Atomic # 9 Polarization: -16.05 SS G_CDS: 0.19 Total: -15.86 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -24.88 -6.59 -31.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239707477.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.380 kcal (2) G-P(sol) polarization free energy of solvation -24.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds